Wall clock time and date at job start Tue Mar 31 2020 05:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86801 * 119.99891 * 2 1 4 4 H 1.48503 * 109.46843 * 239.99741 * 3 2 1 5 5 H 1.48497 * 109.46984 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47493 * 120.00246 * 3 2 1 7 7 C 1.38954 * 120.00256 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00291 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99835 * 0.28393 * 7 2 1 10 10 C 1.34778 * 120.00314 * 179.72104 * 9 7 2 11 11 O 1.21296 * 119.99625 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00344 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47172 * 180.02562 * 12 10 9 14 14 C 1.48285 * 110.99940 * 76.50600 * 13 12 10 15 15 C 1.56014 * 105.06778 * 122.54465 * 14 13 12 16 16 H 1.09003 * 116.21307 * 159.73701 * 15 14 13 17 17 C 1.57070 * 99.67541 * 32.87507 * 15 14 13 18 18 C 1.49701 * 110.99680 * 194.10344 * 13 12 10 19 19 H 1.09005 * 116.16223 * 75.28727 * 18 13 12 20 20 C 1.56013 * 104.08692 * 306.12286 * 18 13 12 21 21 N 1.47858 * 105.11412 * 288.80211 * 20 18 13 22 22 C 1.34781 * 126.93105 * 181.91703 * 21 20 18 23 23 O 1.21280 * 120.00389 * 180.02562 * 22 21 20 24 24 C 1.50700 * 119.99693 * 0.02562 * 22 21 20 25 25 H 1.09006 * 115.55266 * 34.33604 * 24 22 21 26 26 C 1.52998 * 117.50205 * 180.02562 * 24 22 21 27 27 C 1.52995 * 117.50109 * 248.62581 * 24 22 21 28 28 F 1.39898 * 117.50061 * 359.97438 * 27 24 22 29 29 F 1.39906 * 117.50199 * 145.02055 * 27 24 22 30 30 H 0.97000 * 120.00604 * 0.02562 * 1 2 3 31 31 H 0.97009 * 120.00202 * 359.71830 * 9 7 2 32 32 H 1.09008 * 109.46601 * 299.99992 * 12 10 9 33 33 H 1.09000 * 109.46994 * 59.99349 * 12 10 9 34 34 H 1.08998 * 110.32065 * 241.44272 * 14 13 12 35 35 H 1.09006 * 110.32375 * 3.64589 * 14 13 12 36 36 H 1.08996 * 112.36177 * 64.14302 * 17 15 14 37 37 H 1.09006 * 112.35268 * 191.55095 * 17 15 14 38 38 H 1.09003 * 110.31560 * 169.89422 * 20 18 13 39 39 H 1.09002 * 110.40332 * 47.75799 * 20 18 13 40 40 H 1.08998 * 117.50633 * 214.97914 * 26 24 22 41 41 H 1.09006 * 117.49674 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3906 -0.0048 10 6 1.9973 -3.5578 -0.0100 11 8 3.2102 -3.5578 -0.0104 12 6 1.2438 -4.8630 -0.0153 13 7 2.1985 -5.9795 -0.0197 14 6 2.7892 -6.1789 1.3257 15 6 2.4524 -7.6551 1.7019 16 1 3.0700 -8.1071 2.4780 17 6 2.5023 -8.3091 0.2747 18 6 1.5168 -7.2667 -0.3655 19 1 1.2569 -7.4061 -1.4149 20 6 0.3406 -7.3597 0.6553 21 7 0.9818 -7.6393 1.9579 22 6 0.3633 -7.8393 3.1386 23 8 1.0171 -8.0602 4.1359 24 6 -1.1407 -7.7885 3.2195 25 1 -1.6715 -8.1618 2.3437 26 6 -1.7829 -8.0230 4.5882 27 6 -1.7681 -6.6192 3.9810 28 9 -0.9017 -5.6794 4.5496 29 9 -2.9794 -6.1106 3.5000 30 1 -0.4851 0.8400 -0.0004 31 1 0.3533 -2.3907 -0.0048 32 1 0.6174 -4.9244 0.8747 33 1 0.6168 -4.9169 -0.9052 34 1 3.8690 -6.0342 1.2902 35 1 2.3379 -5.4931 2.0428 36 1 3.4976 -8.2645 -0.1673 37 1 2.0971 -9.3211 0.2680 38 1 -0.3333 -8.1720 0.3831 39 1 -0.2028 -6.4156 0.6959 40 1 -2.7364 -8.5506 4.6130 41 1 -1.1176 -8.2145 5.4301 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692362480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:21 Heat of formation + Delta-G solvation = -81.204173 kcal Electronic energy + Delta-G solvation = -29132.343102 eV Core-core repulsion = 24685.906091 eV Total energy + Delta-G solvation = -4446.437011 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.93470 -47.60340 -41.38935 -39.22370 -37.87507 -35.81796 -34.23844 -33.63008 -31.44363 -30.95702 -29.92091 -26.67429 -25.81633 -24.58296 -23.88213 -22.85556 -21.24964 -20.66906 -19.56856 -18.86245 -18.35161 -17.80521 -17.34784 -16.98244 -16.79483 -16.27149 -15.81157 -15.28812 -15.15800 -14.60515 -14.47332 -14.23483 -13.99984 -13.90411 -13.81416 -13.70263 -13.45856 -13.29644 -12.78084 -12.66332 -12.38179 -12.13634 -12.09550 -11.77143 -11.61504 -11.52947 -11.38525 -11.25808 -11.09003 -10.87151 -10.59062 -10.42377 -10.19127 -10.15085 -9.47039 -8.98243 -8.47054 -7.97042 -7.92878 -6.39142 -3.79938 1.84662 2.41725 2.70793 3.07266 3.22024 3.27492 3.31797 3.73816 3.78968 3.81783 3.92007 4.15873 4.20241 4.25487 4.35356 4.42600 4.60932 4.81557 4.94498 5.02616 5.08616 5.16861 5.22156 5.29748 5.36363 5.41314 5.52962 5.61409 5.64787 5.71255 5.75126 5.87766 5.98389 6.24101 6.27308 6.90558 7.06532 7.21605 7.57258 7.79828 8.07960 8.64041 9.20587 9.56493 10.08517 10.78632 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.011980 B = 0.003893 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.757665 B = 7189.852126 C = 8733.284329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.444 3.556 11 O -0.575 6.575 12 C 0.034 3.966 13 N -0.487 5.487 14 C 0.041 3.959 15 C 0.108 3.892 16 H 0.128 0.872 17 C -0.130 4.130 18 C 0.054 3.946 19 H 0.138 0.862 20 C 0.055 3.945 21 N -0.612 5.612 22 C 0.563 3.437 23 O -0.527 6.527 24 C -0.194 4.194 25 H 0.148 0.852 26 C -0.141 4.141 27 C 0.226 3.774 28 F -0.147 7.147 29 F -0.152 7.152 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.052 0.948 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.133 0.867 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.332 -20.229 3.092 21.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.428 4.428 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.229 3.771 11 O -0.459 6.459 12 C -0.097 4.097 13 N -0.210 5.210 14 C -0.088 4.088 15 C 0.005 3.995 16 H 0.146 0.854 17 C -0.168 4.168 18 C -0.054 4.054 19 H 0.155 0.845 20 C -0.069 4.069 21 N -0.347 5.347 22 C 0.350 3.650 23 O -0.404 6.404 24 C -0.216 4.216 25 H 0.165 0.835 26 C -0.179 4.179 27 C 0.188 3.812 28 F -0.127 7.127 29 F -0.133 7.133 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.151 0.849 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.948 -19.966 3.337 20.839 hybrid contribution -1.221 1.070 0.432 1.679 sum -6.169 -18.897 3.769 20.233 Atomic orbital electron populations 1.69598 1.05932 1.28235 1.50626 1.25244 0.95615 0.99669 0.97343 0.85929 0.78773 0.80520 0.79066 1.19891 1.20982 1.19925 1.19637 0.93303 0.82205 1.47676 0.88006 1.41845 1.09108 1.04577 1.64685 1.19679 0.88428 0.84401 0.84591 1.90520 1.13589 1.86952 1.54804 1.22152 0.94287 0.91880 1.01409 1.64622 1.29205 1.01220 1.25973 1.23655 1.02128 0.93569 0.89411 1.24263 0.80562 0.97461 0.97173 0.85377 1.23905 1.01168 0.97616 0.94091 1.24799 0.91445 0.90735 0.98466 0.84470 1.23457 0.97691 1.02020 0.83760 1.49139 1.08322 1.69739 1.07459 1.18749 0.87314 0.76816 0.82126 1.90731 1.66362 1.48957 1.34317 1.23700 0.95250 1.02187 1.00498 0.83480 1.24298 1.04119 0.93135 0.96329 1.19612 0.79138 0.82266 1.00167 1.93123 1.67933 1.67060 1.84587 1.93079 1.42910 1.88988 1.88290 0.91844 0.77605 0.93055 0.89256 0.88573 0.91976 0.88116 0.89888 0.90722 0.89936 0.84922 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 9 N -0.57 -14.49 5.29 -10.96 -0.06 -14.55 16 10 C 0.44 10.53 7.63 -10.98 -0.08 10.45 16 11 O -0.58 -15.66 15.47 5.54 0.09 -15.57 16 12 C 0.03 0.59 4.13 -4.97 -0.02 0.57 16 13 N -0.49 -7.48 4.84 -218.17 -1.06 -8.53 16 14 C 0.04 0.63 5.44 -1.45 -0.01 0.63 16 15 C 0.11 1.29 5.23 -62.57 -0.33 0.96 16 16 H 0.13 1.49 8.05 -51.93 -0.42 1.08 16 17 C -0.13 -1.20 6.80 -22.31 -0.15 -1.35 16 18 C 0.05 0.56 5.21 -62.32 -0.32 0.24 16 19 H 0.14 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.05 0.54 5.45 -1.68 -0.01 0.53 16 21 N -0.61 -7.30 2.95 -156.81 -0.46 -7.77 16 22 C 0.56 7.32 7.31 -10.98 -0.08 7.24 16 23 O -0.53 -8.49 16.60 5.56 0.09 -8.40 16 24 C -0.19 -1.90 5.58 -91.78 -0.51 -2.41 16 25 H 0.15 1.01 7.81 -51.93 -0.41 0.60 16 26 C -0.14 -1.15 10.01 -26.76 -0.27 -1.42 16 27 C 0.23 2.62 5.19 -26.76 -0.14 2.48 16 28 F -0.15 -2.25 17.13 2.25 0.04 -2.21 16 29 F -0.15 -1.82 17.60 2.25 0.04 -1.78 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 32 H 0.05 0.86 6.11 -51.92 -0.32 0.55 16 33 H 0.09 1.34 8.03 -51.93 -0.42 0.93 16 34 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 1.14 7.42 -51.93 -0.39 0.75 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 39 H 0.08 0.91 5.55 -51.93 -0.29 0.62 16 40 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.14 1.20 7.67 -51.93 -0.40 0.80 16 LS Contribution 349.77 15.07 5.27 5.27 Total: -1.00 -34.72 349.77 -7.51 -42.23 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.00 Total: 9.25 kcal Atomic # 6 Polarization: 12.02 SS G_CDS: -2.17 Total: 9.85 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.85 Total: -55.00 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.18 Total: -23.97 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.72 -7.51 -42.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692362480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.976 kcal (2) G-P(sol) polarization free energy of solvation -34.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds