Wall clock time and date at job start Tue Mar 31 2020 06:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35494 * 126.97935 * 2 1 4 4 N 1.30526 * 107.30545 * 179.83284 * 3 2 1 5 5 N 1.28600 * 109.67197 * 0.43817 * 4 3 2 6 6 C 1.30517 * 109.67250 * 359.72320 * 5 4 3 7 7 C 1.50698 * 126.34522 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47203 * 269.95285 * 7 6 5 9 9 C 1.46895 * 111.00253 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.47525 * 180.02562 * 9 8 7 11 11 H 1.08997 * 109.46713 * 305.00577 * 10 9 8 12 12 O 1.42905 * 109.46905 * 65.00427 * 10 9 8 13 13 C 1.52999 * 109.47138 * 185.00404 * 10 9 8 14 14 N 1.46498 * 109.46694 * 180.02562 * 13 10 9 15 15 C 1.34781 * 119.99878 * 180.02562 * 14 13 10 16 16 O 1.21279 * 120.00008 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99923 * 179.97438 * 15 14 13 18 18 S 1.81004 * 109.47163 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00283 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99922 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00065 * 179.97438 * 19 18 17 22 22 N 1.31629 * 119.99930 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00098 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46665 * 59.99724 * 23 21 19 25 25 H 1.48497 * 109.47167 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46666 * 299.99987 * 23 21 19 27 27 H 1.09002 * 109.47391 * 269.68706 * 1 2 3 28 28 H 1.09001 * 109.46813 * 149.68762 * 1 2 3 29 29 H 1.09004 * 109.47041 * 29.68889 * 1 2 3 30 30 H 1.07996 * 126.34608 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47086 * 29.95554 * 7 6 5 32 32 H 1.09004 * 109.47234 * 149.95544 * 7 6 5 33 33 H 1.00893 * 111.00479 * 303.95968 * 8 7 6 34 34 H 1.09000 * 109.47485 * 300.00990 * 9 8 7 35 35 H 1.09005 * 109.47225 * 60.00306 * 9 8 7 36 36 H 0.96694 * 113.99924 * 59.99970 * 12 10 9 37 37 H 1.09005 * 109.46848 * 299.99602 * 13 10 9 38 38 H 1.08995 * 109.47518 * 59.99908 * 13 10 9 39 39 H 0.97003 * 120.00277 * 359.97438 * 14 13 10 40 40 H 1.08998 * 109.47499 * 299.99659 * 17 15 14 41 41 H 1.09001 * 109.47101 * 59.99887 * 17 15 14 42 42 H 0.97003 * 120.00086 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6430 0.0036 5 7 3.5091 -0.6430 -0.0034 6 6 2.2801 -1.0824 -0.0059 7 6 1.8477 -2.5260 -0.0132 8 7 1.7064 -2.9878 -1.4005 9 6 1.2857 -4.3944 -1.4469 10 6 1.1502 -4.8385 -2.9048 11 1 0.4722 -4.1645 -3.4283 12 8 2.4331 -4.8068 -3.5335 13 6 0.5929 -6.2625 -2.9545 14 7 0.4638 -6.6879 -4.3504 15 6 -0.0106 -7.9158 -4.6396 16 8 -0.3302 -8.6688 -3.7442 17 6 -0.1440 -8.3532 -6.0755 18 16 -0.8031 -10.0379 -6.1344 19 6 -0.8547 -10.2856 -7.8781 20 1 -0.5291 -9.5008 -8.5449 21 6 -1.3128 -11.4895 -8.3948 22 7 -1.7082 -12.4465 -7.5822 23 14 -1.3669 -11.7524 -10.2435 24 1 0.0025 -11.6198 -10.8025 25 1 -1.8919 -13.1104 -10.5353 26 1 -2.2547 -10.7354 -10.8622 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8928 -0.5090 30 1 1.9701 2.1169 -0.0004 31 1 2.5963 -3.1320 0.4970 32 1 0.8911 -2.6214 0.5006 33 1 1.0655 -2.4012 -1.9134 34 1 2.0306 -5.0132 -0.9467 35 1 0.3253 -4.5032 -0.9429 36 1 3.0886 -5.3843 -3.1191 37 1 1.2710 -6.9365 -2.4309 38 1 -0.3855 -6.2868 -2.4749 39 1 0.7191 -6.0855 -5.0666 40 1 -0.8217 -7.6790 -6.5993 41 1 0.8347 -8.3293 -6.5550 42 1 -2.0287 -13.2879 -7.9433 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699035946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:22 Heat of formation + Delta-G solvation = -1.845600 kcal Electronic energy + Delta-G solvation = -24158.464133 eV Core-core repulsion = 20301.601505 eV Total energy + Delta-G solvation = -3856.862627 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56653 -39.50488 -38.25697 -36.31017 -35.39008 -34.10965 -32.43470 -31.97006 -30.44015 -28.94104 -28.27268 -26.58034 -25.47977 -24.04482 -22.86128 -22.22297 -21.27929 -20.32517 -17.95246 -17.82332 -17.26593 -17.02567 -16.61348 -16.38491 -15.94765 -15.63915 -15.24128 -15.08055 -14.89928 -14.80505 -14.62024 -14.05585 -13.95200 -13.73864 -13.38048 -13.10285 -12.95552 -12.87372 -12.55675 -12.43003 -11.92573 -11.77005 -11.38115 -11.05237 -11.04037 -10.80018 -10.78260 -10.72696 -10.43319 -9.83253 -9.76354 -9.44818 -9.08679 -9.06711 -8.94353 -8.25542 -6.51160 -6.22215 -3.93046 1.24916 1.90472 2.43195 2.94846 3.05845 3.23440 3.25435 3.28814 3.44201 3.70202 3.81074 3.88680 4.07490 4.14003 4.20129 4.29225 4.31414 4.39907 4.58047 4.59622 4.66405 4.81412 4.98540 5.09408 5.12919 5.14932 5.15301 5.31857 5.47781 5.63962 5.65096 5.74001 5.88697 6.13734 6.15037 6.31884 6.54472 6.61327 7.37924 7.58910 7.68062 8.30661 8.34586 8.57203 9.23090 10.85151 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.036592 B = 0.001560 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.014695 B =17943.412981 C =18095.320155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.478 5.478 3 C 0.151 3.849 4 N -0.297 5.297 5 N -0.273 5.273 6 C 0.177 3.823 7 C 0.148 3.852 8 N -0.670 5.670 9 C 0.030 3.970 10 C 0.102 3.898 11 H 0.102 0.898 12 O -0.545 6.545 13 C 0.090 3.910 14 N -0.733 5.733 15 C 0.532 3.468 16 O -0.520 6.520 17 C -0.153 4.153 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.219 0.781 31 H 0.111 0.889 32 H 0.050 0.950 33 H 0.341 0.659 34 H 0.087 0.913 35 H 0.047 0.953 36 H 0.379 0.621 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.403 0.597 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.277 26.814 16.579 31.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.170 5.170 3 C -0.137 4.137 4 N -0.136 5.136 5 N -0.113 5.113 6 C -0.091 4.091 7 C 0.017 3.983 8 N -0.303 5.303 9 C -0.100 4.100 10 C 0.042 3.958 11 H 0.120 0.880 12 O -0.350 6.350 13 C -0.035 4.035 14 N -0.388 5.388 15 C 0.318 3.682 16 O -0.395 6.395 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.103 0.897 28 H 0.106 0.894 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.159 0.841 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.226 0.774 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.534 25.645 17.663 31.339 hybrid contribution -1.832 0.885 -1.870 2.763 sum 1.702 26.529 15.793 30.921 Atomic orbital electron populations 1.22135 0.75338 1.05382 1.04369 1.46261 1.09186 1.06933 1.54620 1.26495 0.87261 0.94925 1.05004 1.74327 1.18029 1.03361 1.17902 1.74307 1.16970 1.02967 1.17066 1.24675 0.87431 0.91805 1.05198 1.20210 1.00960 0.86041 0.91129 1.60239 1.55383 1.03051 1.11582 1.22655 1.00297 0.89393 0.97631 1.22071 0.86409 0.95136 0.92218 0.88003 1.86615 1.20735 1.69432 1.58204 1.21895 1.01961 0.94993 0.84669 1.45851 1.68345 1.16980 1.07638 1.20333 0.75931 0.80611 0.91290 1.90699 1.47793 1.52508 1.48471 1.23527 1.05407 1.06734 0.94717 1.85366 1.82796 1.05765 1.09489 1.22834 1.50534 1.03641 0.91459 0.90939 1.24988 0.94540 0.94879 0.99125 1.70007 1.40276 1.05105 1.34940 0.86221 0.78633 0.77513 0.83123 1.19904 1.20804 1.19954 0.89693 0.89392 0.88545 0.76459 0.87134 0.93171 0.84116 0.89413 0.93501 0.77363 0.91139 0.90882 0.76215 0.89222 0.89098 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.05 10.89 59.85 0.65 0.70 16 2 N -0.48 -2.52 3.15 -122.69 -0.39 -2.91 16 3 C 0.15 0.98 12.74 -89.94 -1.15 -0.16 16 4 N -0.30 -3.35 12.21 29.69 0.36 -2.99 16 5 N -0.27 -3.26 12.21 32.80 0.40 -2.86 16 6 C 0.18 1.41 7.54 -154.99 -1.17 0.24 16 7 C 0.15 0.80 5.86 -4.98 -0.03 0.77 16 8 N -0.67 -3.99 6.44 -115.06 -0.74 -4.73 16 9 C 0.03 0.15 5.32 -3.83 -0.02 0.13 16 10 C 0.10 0.70 3.23 -26.73 -0.09 0.61 16 11 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 12 O -0.54 -4.73 13.03 -35.23 -0.46 -5.18 16 13 C 0.09 0.87 5.34 -4.04 -0.02 0.85 16 14 N -0.73 -9.25 5.45 -60.30 -0.33 -9.58 16 15 C 0.53 9.66 7.85 -10.98 -0.09 9.57 16 16 O -0.52 -11.50 15.86 5.56 0.09 -11.41 16 17 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.08 -0.03 8.14 -51.93 -0.42 -0.46 16 28 H 0.09 -0.01 7.81 -51.93 -0.41 -0.41 16 29 H 0.10 -0.10 8.14 -51.93 -0.42 -0.53 16 30 H 0.22 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.15 7.86 -51.93 -0.41 -0.26 16 33 H 0.34 1.79 8.72 -39.30 -0.34 1.45 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.38 2.47 9.04 45.56 0.41 2.88 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.40 4.33 8.35 -40.82 -0.34 3.99 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 42 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -40.19 380.32 -8.60 -48.79 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -5.28 Total: 1.07 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -1.49 Total: -3.07 kcal Atomic # 7 Polarization: -48.45 SS G_CDS: 0.04 Total: -48.41 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.37 Total: -16.59 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -40.19 -8.60 -48.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699035946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.949 kcal (2) G-P(sol) polarization free energy of solvation -40.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds