Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35491 * 126.97745 * 2 1 4 4 N 1.30526 * 107.30369 * 180.02562 * 3 2 1 5 5 N 1.28596 * 109.67015 * 359.73076 * 4 3 2 6 6 C 1.30516 * 109.67577 * 0.44553 * 5 4 3 7 7 C 1.50705 * 126.34826 * 179.81997 * 6 5 4 8 8 N 1.46900 * 109.47217 * 269.69312 * 7 6 5 9 9 C 1.46898 * 110.99589 * 179.97438 * 8 7 6 10 10 C 1.53001 * 109.46893 * 180.02562 * 9 8 7 11 11 H 1.08999 * 109.47164 * 60.00204 * 10 9 8 12 12 O 1.42903 * 109.47171 * 299.99938 * 10 9 8 13 13 C 1.53003 * 109.47376 * 180.02562 * 10 9 8 14 14 N 1.46494 * 109.47283 * 185.00021 * 13 10 9 15 15 C 1.34779 * 119.99921 * 179.97438 * 14 13 10 16 16 O 1.21281 * 120.00109 * 359.97438 * 15 14 13 17 17 C 1.50702 * 119.99840 * 179.97438 * 15 14 13 18 18 S 1.80996 * 109.47109 * 180.02562 * 17 15 14 19 19 C 1.76197 * 100.00355 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99942 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00190 * 179.97438 * 19 18 17 22 22 N 1.31634 * 120.00037 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 120.00120 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47354 * 89.99351 * 23 21 19 25 25 H 1.48498 * 109.47178 * 209.99470 * 23 21 19 26 26 H 1.48497 * 109.47264 * 329.99662 * 23 21 19 27 27 H 1.08996 * 109.47188 * 269.99799 * 1 2 3 28 28 H 1.09001 * 109.47001 * 29.99628 * 1 2 3 29 29 H 1.09005 * 109.47572 * 149.99666 * 1 2 3 30 30 H 1.07992 * 126.35191 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47162 * 149.69171 * 7 6 5 32 32 H 1.09003 * 109.46881 * 29.69456 * 7 6 5 33 33 H 1.00893 * 110.99943 * 303.95254 * 8 7 6 34 34 H 1.08999 * 109.47049 * 60.00398 * 9 8 7 35 35 H 1.08997 * 109.47646 * 300.00448 * 9 8 7 36 36 H 0.96700 * 114.00311 * 300.00378 * 12 10 9 37 37 H 1.09005 * 109.46682 * 304.99749 * 13 10 9 38 38 H 1.08999 * 109.47221 * 64.99915 * 13 10 9 39 39 H 0.96999 * 120.00388 * 359.97438 * 14 13 10 40 40 H 1.08992 * 109.47506 * 300.00283 * 17 15 14 41 41 H 1.08999 * 109.46876 * 60.00368 * 17 15 14 42 42 H 0.97000 * 120.00017 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5090 0.6430 -0.0006 5 7 3.5090 -0.6430 0.0048 6 6 2.2800 -1.0824 -0.0006 7 6 1.8476 -2.5261 -0.0009 8 7 1.7066 -2.9947 -1.3860 9 6 1.2858 -4.4016 -1.4254 10 6 1.1506 -4.8528 -2.8811 11 1 2.1112 -4.7467 -3.3851 12 8 0.1743 -4.0449 -3.5415 13 6 0.7117 -6.3180 -2.9222 14 7 0.6976 -6.7847 -4.3107 15 6 0.3404 -8.0536 -4.5915 16 8 0.0312 -8.8092 -3.6946 17 6 0.3253 -8.5336 -6.0200 18 16 -0.1937 -10.2668 -6.0687 19 6 -0.1233 -10.5588 -7.8048 20 1 0.1777 -9.7663 -8.4739 21 6 -0.4535 -11.8077 -8.3125 22 7 -0.4013 -12.0256 -9.6097 23 14 -0.9733 -13.1787 -7.1553 24 1 -2.4463 -13.1391 -6.9710 25 1 -0.5819 -14.4894 -7.7333 26 1 -0.3051 -12.9977 -5.8416 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.9702 2.1169 0.0004 31 1 0.8909 -2.6189 0.5133 32 1 2.5961 -3.1296 0.5125 33 1 1.0657 -2.4107 -1.9018 34 1 0.3254 -4.5078 -0.9210 35 1 2.0306 -5.0179 -0.9220 36 1 -0.7068 -4.0904 -3.1457 37 1 1.4095 -6.9226 -2.3427 38 1 -0.2880 -6.4099 -2.4978 39 1 0.9453 -6.1806 -5.0281 40 1 -0.3728 -7.9293 -6.5990 41 1 1.3249 -8.4412 -6.4449 42 1 -0.6318 -12.8985 -9.9644 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699035953.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -3.231563 kcal Electronic energy + Delta-G solvation = -24225.843234 eV Core-core repulsion = 20368.920507 eV Total energy + Delta-G solvation = -3856.922727 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58436 -39.64129 -38.43700 -36.32539 -35.40362 -34.28633 -32.44587 -32.00156 -30.56881 -29.05051 -28.29780 -26.64188 -25.61488 -24.10307 -22.87659 -22.23967 -21.33022 -20.44571 -18.02607 -17.86236 -17.29826 -17.02985 -16.84809 -16.46660 -16.11123 -15.66981 -15.31555 -15.09965 -15.05108 -14.88125 -14.65389 -14.08944 -13.93780 -13.66689 -13.47641 -13.25937 -13.06918 -12.88996 -12.80188 -12.50521 -11.94306 -11.90007 -11.47112 -11.27999 -11.01954 -10.82935 -10.73933 -10.73305 -10.54325 -9.87072 -9.78536 -9.57815 -9.14206 -9.06751 -8.99796 -8.51761 -6.93131 -6.29530 -4.01562 1.23308 1.89018 2.41148 2.71582 2.92628 3.17487 3.31805 3.46206 3.49442 3.65494 3.78923 3.87589 3.93830 4.06254 4.26574 4.29910 4.32163 4.43430 4.50285 4.53824 4.58293 4.74722 4.79323 5.00355 5.06570 5.09478 5.11063 5.24313 5.30303 5.51334 5.62155 5.65859 5.76234 6.01110 6.12529 6.30078 6.44515 6.63577 7.11380 7.56411 7.93519 8.28879 8.41360 8.43894 9.16495 10.79699 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.042214 B = 0.001594 C = 0.001583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.130162 B =17561.091539 C =17679.735261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.477 5.477 3 C 0.151 3.849 4 N -0.297 5.297 5 N -0.273 5.273 6 C 0.176 3.824 7 C 0.148 3.852 8 N -0.675 5.675 9 C 0.032 3.968 10 C 0.098 3.902 11 H 0.118 0.882 12 O -0.555 6.555 13 C 0.092 3.908 14 N -0.731 5.731 15 C 0.531 3.469 16 O -0.522 6.522 17 C -0.124 4.124 18 S -0.143 6.143 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.219 0.781 31 H 0.050 0.950 32 H 0.111 0.889 33 H 0.347 0.653 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.373 0.627 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.404 0.596 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 26.577 21.471 34.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.169 5.169 3 C -0.136 4.136 4 N -0.136 5.136 5 N -0.114 5.114 6 C -0.092 4.092 7 C 0.017 3.983 8 N -0.309 5.309 9 C -0.098 4.098 10 C 0.038 3.962 11 H 0.136 0.864 12 O -0.360 6.360 13 C -0.033 4.033 14 N -0.386 5.386 15 C 0.317 3.683 16 O -0.397 6.397 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.107 0.893 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.236 0.764 31 H 0.068 0.932 32 H 0.129 0.871 33 H 0.166 0.834 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.220 0.780 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.239 0.761 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.798 25.190 22.377 33.703 hybrid contribution -2.695 0.585 -0.546 2.812 sum -1.898 25.775 21.832 33.832 Atomic orbital electron populations 1.22133 0.75334 1.05418 1.04319 1.46253 1.09193 1.06919 1.54571 1.26498 0.87249 0.94936 1.04960 1.74325 1.18037 1.03332 1.17908 1.74302 1.16968 1.03003 1.17115 1.24669 0.87448 0.91802 1.05244 1.20206 1.00956 0.86019 0.91144 1.60226 1.55640 1.03259 1.11725 1.22594 1.00247 0.89626 0.97352 1.22244 0.93592 0.88093 0.92246 0.86432 1.86657 1.21954 1.68774 1.58604 1.21896 1.02364 0.94361 0.84713 1.45821 1.71436 1.13027 1.08314 1.20306 0.75845 0.81040 0.91088 1.90697 1.46608 1.54365 1.48023 1.23273 1.05863 1.03214 0.95105 1.84760 1.89061 1.05603 1.12203 1.22321 1.53294 1.02058 0.89276 0.89350 1.24714 0.93735 0.97902 0.94951 1.69941 1.46553 1.23792 1.11352 0.86730 0.80490 0.81676 0.82913 1.19243 1.19921 1.15946 0.89729 0.88530 0.89375 0.76437 0.93186 0.87113 0.83353 0.94139 0.88859 0.77960 0.90461 0.91357 0.76087 0.88438 0.88367 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 10.89 59.85 0.65 0.69 16 2 N -0.48 -2.46 3.15 -122.69 -0.39 -2.84 16 3 C 0.15 0.97 12.74 -89.94 -1.15 -0.18 16 4 N -0.30 -3.31 12.21 29.69 0.36 -2.95 16 5 N -0.27 -3.22 12.21 32.80 0.40 -2.82 16 6 C 0.18 1.38 7.54 -154.99 -1.17 0.21 16 7 C 0.15 0.77 5.86 -4.97 -0.03 0.74 16 8 N -0.68 -3.89 6.49 -115.06 -0.75 -4.63 16 9 C 0.03 0.15 5.39 -3.82 -0.02 0.13 16 10 C 0.10 0.63 3.27 -26.73 -0.09 0.54 16 11 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 12 O -0.56 -3.61 12.62 -35.23 -0.44 -4.05 16 13 C 0.09 0.83 5.31 -4.04 -0.02 0.81 16 14 N -0.73 -8.68 5.50 -60.29 -0.33 -9.01 16 15 C 0.53 9.10 7.85 -10.98 -0.09 9.02 16 16 O -0.52 -10.89 15.86 5.56 0.09 -10.80 16 17 C -0.12 -2.37 6.16 36.01 0.22 -2.14 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 19 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 20 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 21 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.50 13.97 55.49 0.78 -25.73 16 23 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 27 H 0.08 -0.05 8.14 -51.93 -0.42 -0.48 16 28 H 0.10 -0.12 8.14 -51.93 -0.42 -0.54 16 29 H 0.09 -0.02 7.81 -51.93 -0.41 -0.43 16 30 H 0.22 0.40 8.06 -52.49 -0.42 -0.02 16 31 H 0.05 0.14 7.86 -51.93 -0.41 -0.27 16 32 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.35 1.88 8.11 -39.30 -0.32 1.56 16 34 H 0.04 0.13 8.14 -51.93 -0.42 -0.29 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.37 1.30 9.05 45.56 0.41 1.71 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.40 4.06 8.47 -40.82 -0.35 3.71 16 40 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 41 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 376.92 15.07 5.68 5.68 Total: -1.00 -39.70 376.92 -8.08 -47.78 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.29 Total: 0.18 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -1.47 Total: -2.19 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.07 Total: -47.98 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.36 Total: -14.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.70 -8.08 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699035953.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.545 kcal (2) G-P(sol) polarization free energy of solvation -39.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds