Wall clock time and date at job start Tue Mar 31 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.28598 * 124.62088 * 2 1 4 4 C 1.31385 * 108.71694 * 179.97438 * 3 2 1 5 5 C 1.39673 * 105.89905 * 0.02562 * 4 3 2 6 6 C 1.50705 * 127.04664 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47217 * 94.99570 * 6 5 4 8 8 C 1.46898 * 110.99589 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.46893 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47164 * 60.00204 * 9 8 7 11 11 O 1.42903 * 109.47171 * 299.99938 * 9 8 7 12 12 C 1.53003 * 109.47376 * 180.02562 * 9 8 7 13 13 N 1.46494 * 109.47283 * 185.00021 * 12 9 8 14 14 C 1.34779 * 119.99921 * 179.97438 * 13 12 9 15 15 O 1.21281 * 120.00109 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99840 * 179.97438 * 14 13 12 17 17 S 1.80996 * 109.47109 * 180.02562 * 16 14 13 18 18 C 1.76197 * 100.00355 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99942 * 0.02562 * 18 17 16 20 20 C 1.38797 * 120.00190 * 179.97438 * 18 17 16 21 21 N 1.31632 * 120.00195 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47069 * 90.00667 * 22 20 18 24 24 H 1.48502 * 109.47299 * 210.00539 * 22 20 18 25 25 H 1.48501 * 109.47224 * 330.00519 * 22 20 18 26 26 N 1.28605 * 124.61530 * 180.23995 * 2 1 3 27 27 H 1.09001 * 109.47092 * 90.02154 * 1 2 3 28 28 H 1.09002 * 109.47598 * 210.02263 * 1 2 3 29 29 H 1.09003 * 109.47118 * 330.02674 * 1 2 3 30 30 H 1.07994 * 127.04374 * 179.97438 * 4 3 2 31 31 H 1.09002 * 109.47162 * 334.99429 * 6 5 4 32 32 H 1.09003 * 109.46881 * 214.99714 * 6 5 4 33 33 H 1.00904 * 110.99777 * 56.04865 * 7 6 5 34 34 H 1.08999 * 109.47049 * 60.00398 * 8 7 6 35 35 H 1.08997 * 109.47646 * 300.00448 * 8 7 6 36 36 H 0.96700 * 114.00311 * 300.00378 * 11 9 8 37 37 H 1.09005 * 109.46682 * 304.99749 * 12 9 8 38 38 H 1.08999 * 109.47221 * 64.99915 * 12 9 8 39 39 H 0.96999 * 120.00388 * 359.97438 * 13 12 9 40 40 H 1.08992 * 109.47506 * 300.00283 * 16 14 13 41 41 H 1.08999 * 109.46876 * 60.00368 * 16 14 13 42 42 H 0.97000 * 120.00215 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1956 1.0583 0.0000 4 6 3.4592 0.6982 0.0006 5 6 3.4591 -0.6985 0.0003 6 6 4.6618 -1.6065 0.0002 7 7 4.9799 -1.9981 1.3799 8 6 6.1495 -2.8861 1.4186 9 6 6.4489 -3.2720 2.8686 10 1 5.5872 -3.7874 3.2927 11 8 6.7206 -2.0930 3.6290 12 6 7.6674 -4.1964 2.9091 13 7 7.8822 -4.6614 4.2816 14 6 8.9062 -5.4927 4.5590 15 8 9.6495 -5.8562 3.6723 16 6 9.1275 -5.9705 5.9710 17 16 10.5689 -7.0642 6.0189 18 6 10.5939 -7.4626 7.7351 19 1 9.8473 -7.0484 8.3965 20 6 11.5724 -8.3095 8.2368 21 7 12.4821 -8.8147 7.4306 22 14 11.5993 -8.7313 10.0563 23 1 10.7776 -9.9449 10.2953 24 1 12.9979 -8.9883 10.4844 25 1 11.0438 -7.5960 10.8359 26 7 2.1956 -1.0584 -0.0044 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3634 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5134 30 1 4.3211 1.3490 0.0003 31 1 5.5130 -1.0821 -0.4341 32 1 4.4446 -2.4972 -0.5894 33 1 4.1841 -2.4291 1.8260 34 1 7.0111 -2.3708 0.9941 35 1 5.9422 -3.7856 0.8390 36 1 7.4767 -1.5831 3.3074 37 1 7.4951 -5.0535 2.2579 38 1 8.5480 -3.6521 2.5679 39 1 7.2875 -4.3710 4.9908 40 1 9.3004 -5.1135 6.6218 41 1 8.2469 -6.5144 6.3127 42 1 13.1657 -9.4069 7.7811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753904941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:37 Heat of formation + Delta-G solvation = 24.523078 kcal Electronic energy + Delta-G solvation = -23893.070861 eV Core-core repulsion = 20037.351665 eV Total energy + Delta-G solvation = -3855.719196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.131 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.94237 -39.43270 -38.16506 -36.19281 -34.08171 -34.00139 -32.87193 -32.41571 -30.84945 -29.46116 -28.12150 -26.10568 -25.44454 -23.89859 -22.77482 -22.07008 -21.18468 -20.27318 -17.91545 -17.83443 -17.28383 -17.12397 -16.58296 -16.34613 -15.64077 -15.37433 -15.18478 -14.88061 -14.85099 -14.78798 -14.56492 -13.90057 -13.68037 -13.48595 -13.34744 -13.07094 -12.86042 -12.67904 -12.52917 -12.44080 -11.75759 -11.69189 -11.27076 -11.20963 -11.05115 -11.01077 -10.76166 -10.69867 -10.33969 -9.80022 -9.65769 -9.39723 -9.05937 -8.92021 -8.84226 -8.22510 -6.48750 -6.20498 -3.90963 1.37792 1.89105 1.98205 3.00257 3.10313 3.23561 3.28232 3.32203 3.53840 3.67375 3.91438 4.21347 4.21923 4.30228 4.47052 4.47693 4.53033 4.68380 4.74166 4.76193 4.80583 5.08105 5.09826 5.14731 5.17600 5.19985 5.26004 5.53719 5.64459 5.71515 5.76493 5.80893 5.92055 6.16944 6.24952 6.41482 6.60938 6.84809 7.44594 7.61051 7.72588 7.90879 8.36651 8.61738 9.24949 10.86957 Molecular weight = 329.13amu Principal moments of inertia in cm(-1) A = 0.037318 B = 0.001493 C = 0.001465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.127222 B =18749.651771 C =19112.137515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.159 5.159 3 N -0.293 5.293 4 C -0.006 4.006 5 C 0.005 3.995 6 C 0.149 3.851 7 N -0.674 5.674 8 C 0.029 3.971 9 C 0.101 3.899 10 H 0.102 0.898 11 O -0.545 6.545 12 C 0.091 3.909 13 N -0.733 5.733 14 C 0.532 3.468 15 O -0.520 6.520 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.286 5.286 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.198 0.802 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.346 0.654 34 H 0.084 0.916 35 H 0.046 0.954 36 H 0.377 0.623 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.894 18.805 -16.328 33.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.060 5.060 3 N -0.134 5.134 4 C -0.189 4.189 5 C -0.158 4.158 6 C 0.018 3.982 7 N -0.306 5.306 8 C -0.101 4.101 9 C 0.041 3.959 10 H 0.120 0.880 11 O -0.350 6.350 12 C -0.035 4.035 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.395 6.395 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.129 5.129 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.215 0.785 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.164 0.836 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.224 0.776 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.061 18.458 -17.384 34.274 hybrid contribution -0.210 -0.352 1.778 1.824 sum -23.270 18.106 -15.606 33.360 Atomic orbital electron populations 1.22128 0.70224 1.05940 1.04897 1.47889 1.08871 0.99327 1.49921 1.74082 1.04058 1.15984 1.19254 1.24646 0.94336 0.94673 1.05225 1.22979 0.92112 0.94383 1.06326 1.20090 0.91827 0.95861 0.90374 1.60370 1.08369 1.45961 1.15881 1.22611 0.94728 0.95688 0.97092 1.22091 0.96943 0.86023 0.90853 0.87981 1.86607 1.54230 1.37504 1.56680 1.21914 0.97992 0.98426 0.85128 1.45865 1.32711 1.50411 1.09811 1.20327 0.79573 0.77515 0.90794 1.90698 1.44943 1.55811 1.48024 1.23525 1.06872 1.04834 0.95139 1.85370 1.29856 1.56089 1.12133 1.22878 1.17622 1.34361 0.93522 0.90902 1.24987 0.94564 0.95042 0.98955 1.70019 1.14813 1.30342 1.35161 0.86167 0.77552 0.78814 0.82962 1.20287 1.20749 1.19682 1.73980 1.03712 1.15942 1.19252 0.89312 0.87914 0.87868 0.78502 0.88562 0.93348 0.83584 0.89789 0.93597 0.77572 0.90865 0.91161 0.76323 0.89130 0.89227 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.36 11.57 59.85 0.69 1.06 16 2 N -0.16 -1.31 4.35 -16.64 -0.07 -1.38 16 3 N -0.29 -2.70 12.05 30.67 0.37 -2.33 16 4 C -0.01 -0.05 12.16 -17.21 -0.21 -0.26 16 5 C 0.00 0.04 6.87 -82.25 -0.56 -0.52 16 6 C 0.15 0.93 6.27 -4.97 -0.03 0.90 16 7 N -0.67 -4.64 6.36 -115.06 -0.73 -5.37 16 8 C 0.03 0.18 5.35 -3.82 -0.02 0.16 16 9 C 0.10 0.77 3.21 -26.73 -0.09 0.69 16 10 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 11 O -0.55 -4.81 13.15 -35.23 -0.46 -5.28 16 12 C 0.09 0.94 5.31 -4.04 -0.02 0.92 16 13 N -0.73 -9.64 5.50 -60.29 -0.33 -9.97 16 14 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 15 O -0.52 -11.72 15.86 5.56 0.09 -11.64 16 16 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 21 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 N -0.29 -2.64 12.05 33.71 0.41 -2.24 16 27 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.20 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.35 2.62 8.72 -39.29 -0.34 2.27 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.38 2.42 9.05 45.56 0.41 2.83 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.40 4.48 8.47 -40.82 -0.35 4.13 16 40 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -38.39 381.83 -6.71 -45.10 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.32 Total: 3.46 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 0.09 Total: -3.19 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.37 Total: -46.80 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.38 Total: -16.91 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.39 -6.71 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753904941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.622 kcal (2) G-P(sol) polarization free energy of solvation -38.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds