Wall clock time and date at job start Tue Mar 31 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99640 * 2 1 4 4 H 1.48496 * 109.47156 * 240.00304 * 3 2 1 5 5 H 1.48498 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46862 * 120.00107 * 3 2 1 7 7 C 1.38807 * 120.00159 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99867 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00146 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00008 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47195 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47195 * 180.02562 * 11 10 9 13 13 C 1.46501 * 120.00301 * 269.99934 * 12 11 10 14 14 C 1.52997 * 109.46978 * 262.73922 * 13 12 11 15 15 O 1.42896 * 109.47079 * 65.00115 * 14 13 12 16 16 C 1.34778 * 120.00027 * 89.99996 * 12 11 10 17 17 O 1.21506 * 119.99568 * 3.05359 * 16 12 11 18 18 C 1.48274 * 120.00251 * 183.04936 * 16 12 11 19 19 C 1.40277 * 119.24153 * 173.14845 * 18 16 12 20 20 C 1.36506 * 119.81667 * 179.78873 * 19 18 16 21 21 C 1.40754 * 118.24034 * 0.44997 * 20 19 18 22 22 C 1.40421 * 121.26975 * 179.82374 * 21 20 19 23 23 C 1.36132 * 119.64802 * 179.74392 * 22 21 20 24 24 C 1.39435 * 120.91296 * 0.02562 * 23 22 21 25 25 C 1.35998 * 121.08626 * 359.97438 * 24 23 22 26 26 C 1.40828 * 119.73554 * 0.02562 * 25 24 23 27 27 N 1.31882 * 119.23822 * 353.17543 * 18 16 12 28 28 H 0.96997 * 120.00291 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00187 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.47221 * 60.00635 * 10 9 7 31 31 H 1.09000 * 109.47423 * 300.00315 * 10 9 7 32 32 H 1.09002 * 109.46765 * 60.00053 * 11 10 9 33 33 H 1.09000 * 109.46944 * 300.00304 * 11 10 9 34 34 H 1.09006 * 109.46722 * 22.73986 * 13 12 11 35 35 H 1.08998 * 109.47156 * 142.73971 * 13 12 11 36 36 H 1.09004 * 109.46996 * 184.99637 * 14 13 12 37 37 H 1.08995 * 109.47353 * 304.99842 * 14 13 12 38 38 H 0.96704 * 114.00017 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.09077 * 0.02562 * 19 18 16 40 40 H 1.08000 * 120.87516 * 180.02562 * 20 19 18 41 41 H 1.07993 * 120.17649 * 359.74738 * 22 21 20 42 42 H 1.07999 * 119.54535 * 180.02562 * 23 22 21 43 43 H 1.08003 * 119.45740 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.13099 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7464 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.0641 -4.8197 -0.0012 12 7 1.7966 -6.0884 -0.0006 13 6 2.1638 -6.7229 -1.2690 14 6 1.1314 -7.7960 -1.6201 15 8 -0.1350 -7.1785 -1.8589 16 6 2.1327 -6.6719 1.1669 17 8 1.7802 -6.1748 2.2181 18 6 2.9325 -7.9204 1.1686 19 6 3.3965 -8.4354 2.3881 20 6 4.1302 -9.5864 2.4037 21 6 4.4056 -10.2173 1.1759 22 6 5.1574 -11.4019 1.1177 23 6 5.3996 -11.9872 -0.0873 24 6 4.9116 -11.4264 -1.2670 25 6 4.1799 -10.2802 -1.2495 26 6 3.9075 -9.6441 -0.0230 27 7 3.1917 -8.5209 0.0233 28 1 -0.4850 0.8400 0.0004 29 1 0.3557 -2.3881 -0.0005 30 1 2.6848 -3.7145 0.8895 31 1 2.6850 -3.7144 -0.8905 32 1 0.4378 -4.7618 -0.8914 33 1 0.4370 -4.7621 0.8886 34 1 2.1888 -5.9707 -2.0576 35 1 3.1476 -7.1825 -1.1739 36 1 1.4509 -8.3282 -2.5161 37 1 1.0423 -8.4992 -0.7921 38 1 -0.8390 -7.8007 -2.0879 39 1 3.1707 -7.9246 3.3125 40 1 4.4956 -9.9982 3.3328 41 1 5.5414 -11.8463 2.0239 42 1 5.9777 -12.8984 -0.1302 43 1 5.1182 -11.9103 -2.2102 44 1 3.8092 -9.8595 -2.1725 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754895998.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:56 Heat of formation + Delta-G solvation = 11.935272 kcal Electronic energy + Delta-G solvation = -27626.513334 eV Core-core repulsion = 23738.344682 eV Total energy + Delta-G solvation = -3888.168652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43973 -39.66949 -37.25459 -37.07757 -35.55540 -34.40775 -33.75323 -31.58535 -30.90376 -30.39679 -29.27855 -27.52118 -25.36028 -24.14954 -23.35573 -22.94681 -22.51893 -21.51834 -19.78152 -18.36407 -17.95864 -17.38929 -17.22545 -17.05191 -15.99536 -15.76178 -15.41233 -14.94233 -14.84072 -14.57036 -14.47077 -14.19212 -13.93348 -13.63029 -13.47152 -13.43038 -13.16540 -13.10045 -12.62389 -12.47175 -12.12343 -11.98423 -11.83602 -11.36115 -11.11701 -10.96086 -10.83349 -10.81801 -10.52841 -10.26485 -10.07682 -9.91419 -9.67331 -9.37014 -9.17109 -8.78099 -8.68375 -8.37695 -6.83652 -5.67181 -2.96075 -0.16200 0.32492 1.54841 2.19857 2.99654 3.10129 3.50864 3.54289 3.56084 3.71927 3.78180 4.14712 4.30522 4.37119 4.41023 4.49089 4.68698 4.69439 4.73759 4.91104 5.06427 5.25920 5.28105 5.33995 5.41459 5.53210 5.54915 5.63621 5.67437 5.73941 5.84370 5.91727 5.95672 5.99146 6.02995 6.18750 6.20624 6.31404 6.41383 6.67829 6.85335 7.02641 7.31107 7.55030 7.69194 7.77773 8.23994 8.51399 9.61967 10.19331 10.54890 11.55755 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018746 B = 0.002635 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.326699 B =10623.736156 C =11088.016790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.110 3.890 12 N -0.573 5.573 13 C 0.104 3.896 14 C 0.074 3.926 15 O -0.569 6.569 16 C 0.557 3.443 17 O -0.524 6.524 18 C 0.128 3.872 19 C -0.123 4.123 20 C -0.061 4.061 21 C -0.090 4.090 22 C -0.099 4.099 23 C -0.111 4.111 24 C -0.104 4.104 25 C -0.087 4.087 26 C 0.118 3.882 27 N -0.440 5.440 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.021 0.979 31 H 0.018 0.982 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.045 0.955 38 H 0.373 0.627 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.478 -31.024 -2.047 32.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.012 4.012 12 N -0.304 5.304 13 C -0.019 4.019 14 C -0.005 4.005 15 O -0.374 6.374 16 C 0.343 3.657 17 O -0.399 6.399 18 C -0.025 4.025 19 C -0.143 4.143 20 C -0.087 4.087 21 C -0.092 4.092 22 C -0.118 4.118 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.106 4.106 26 C -0.005 4.005 27 N -0.152 5.152 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.142 0.858 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.219 0.781 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 9.458 -29.752 -2.191 31.296 hybrid contribution 0.245 -0.035 0.564 0.616 sum 9.704 -29.787 -1.627 31.370 Atomic orbital electron populations 1.69658 1.05070 1.25701 1.57804 1.24745 0.95554 0.97644 1.03128 0.86239 0.78475 0.83503 0.77803 1.21311 1.21677 1.21296 1.19164 0.90959 0.84024 1.42614 0.91301 1.42194 1.05899 0.99720 1.89572 1.20916 0.93896 0.85782 0.97950 1.21796 0.94599 0.80885 1.03944 1.47683 1.54547 1.22757 1.05388 1.22226 0.99136 0.95361 0.85168 1.22525 0.84121 0.95200 0.98657 1.86584 1.19897 1.38188 1.92731 1.17954 0.80335 0.83077 0.84357 1.90823 1.54309 1.63891 1.30914 1.21554 0.96221 0.95262 0.89492 1.21784 0.96956 0.96148 0.99416 1.21484 0.95589 0.94138 0.97496 1.18981 0.99301 0.96793 0.94117 1.21017 0.97757 0.94244 0.98742 1.20996 0.99445 1.00096 0.92395 1.20941 0.97050 0.95615 0.98766 1.20869 0.98189 0.95130 0.96364 1.19033 0.96066 0.92130 0.93257 1.68478 1.12496 1.07214 1.27050 0.93485 0.78187 0.96152 0.96444 0.89456 0.89796 0.90152 0.85777 0.93320 0.93677 0.78125 0.83003 0.83653 0.85082 0.85418 0.85115 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.44 13.06 55.49 0.72 -28.72 16 2 C -0.01 -0.45 5.50 -17.43 -0.10 -0.55 16 3 Si 0.91 23.34 29.55 -169.99 -5.02 18.32 16 4 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -7.04 9.99 -15.06 -0.15 -7.19 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -20.06 5.60 -59.91 -0.34 -20.40 16 10 C 0.14 3.26 6.58 -4.04 -0.03 3.23 16 11 C 0.11 2.14 5.51 -4.04 -0.02 2.11 16 12 N -0.57 -9.45 2.44 -174.64 -0.43 -9.88 16 13 C 0.10 1.38 5.37 -4.04 -0.02 1.36 16 14 C 0.07 0.83 6.61 37.16 0.25 1.08 16 15 O -0.57 -7.21 13.38 -35.23 -0.47 -7.68 16 16 C 0.56 9.40 7.59 -12.13 -0.09 9.31 16 17 O -0.52 -10.53 15.86 5.36 0.09 -10.45 16 18 C 0.13 1.70 6.50 -82.95 -0.54 1.16 16 19 C -0.12 -1.37 9.54 -39.44 -0.38 -1.75 16 20 C -0.06 -0.52 9.88 -39.26 -0.39 -0.91 16 21 C -0.09 -0.79 5.75 -106.72 -0.61 -1.41 16 22 C -0.10 -0.63 9.77 -39.52 -0.39 -1.02 16 23 C -0.11 -0.60 9.96 -39.89 -0.40 -1.00 16 24 C -0.10 -0.59 9.94 -39.94 -0.40 -0.99 16 25 C -0.09 -0.65 9.99 -39.41 -0.39 -1.05 16 26 C 0.12 1.17 6.61 -84.86 -0.56 0.61 16 27 N -0.44 -5.08 4.31 -7.54 -0.03 -5.12 16 28 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 29 H 0.38 10.99 7.67 -40.82 -0.31 10.68 16 30 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.09 1.68 7.84 -51.93 -0.41 1.27 16 33 H 0.08 1.77 7.38 -51.93 -0.38 1.39 16 34 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 35 H 0.13 1.52 5.26 -52.44 -0.28 1.24 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.05 0.54 6.88 -51.93 -0.36 0.18 16 38 H 0.37 3.02 9.12 45.56 0.42 3.43 16 39 H 0.15 1.67 7.62 -52.49 -0.40 1.27 16 40 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 43 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 LS Contribution 371.24 15.07 5.59 5.59 Total: -1.00 -36.81 371.24 -9.16 -45.97 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -5.07 Total: 9.34 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -4.21 Total: 3.01 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.07 Total: -64.11 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.39 Total: -18.13 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -5.02 Total: 18.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.81 -9.16 -45.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754895998.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.910 kcal (2) G-P(sol) polarization free energy of solvation -36.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds