Wall clock time and date at job start Tue Mar 31 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35865 * 116.99829 * 2 1 4 4 C 1.38842 * 119.92991 * 180.02562 * 3 2 1 5 5 C 1.37895 * 120.07245 * 180.02562 * 4 3 2 6 6 C 1.39428 * 119.92778 * 359.97438 * 5 4 3 7 7 C 1.48259 * 120.07040 * 180.02562 * 6 5 4 8 8 N 1.31383 * 126.51164 * 324.97227 * 7 6 5 9 9 N 1.39773 * 109.07554 * 180.02562 * 8 7 6 10 10 C 1.46497 * 125.15333 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47520 * 305.02452 * 10 9 8 12 12 H 1.07998 * 119.99564 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00165 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99941 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99923 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47123 * 90.00258 * 15 13 11 17 17 H 1.48502 * 109.47012 * 210.00184 * 15 13 11 18 18 H 1.48497 * 109.47259 * 330.00298 * 15 13 11 19 19 C 1.34135 * 109.68682 * 0.24747 * 9 8 7 20 20 C 1.37983 * 107.88786 * 359.60798 * 19 9 8 21 21 C 1.47268 * 126.81595 * 180.14778 * 20 19 9 22 22 O 1.21617 * 120.00432 * 151.00733 * 21 20 19 23 23 N 1.34787 * 119.99397 * 331.00595 * 21 20 19 24 24 C 1.46499 * 119.99864 * 183.18172 * 23 21 20 25 25 C 1.46499 * 119.99780 * 3.18167 * 23 21 20 26 26 C 1.39424 * 119.85961 * 0.27948 * 6 5 4 27 27 C 1.37891 * 119.93160 * 359.42081 * 26 6 5 28 28 H 1.08998 * 109.47293 * 300.00078 * 1 2 3 29 29 H 1.08996 * 109.47119 * 60.00114 * 1 2 3 30 30 H 1.09001 * 109.47150 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.96360 * 359.97295 * 4 3 2 32 32 H 1.07992 * 120.03748 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47720 * 65.03045 * 10 9 8 34 34 H 1.09011 * 109.46959 * 185.02908 * 10 9 8 35 35 H 0.96999 * 119.99819 * 180.02562 * 14 13 11 36 36 H 1.07994 * 126.05716 * 179.75742 * 19 9 8 37 37 H 1.08993 * 109.47040 * 89.99940 * 24 23 21 38 38 H 1.08994 * 109.47083 * 210.00479 * 24 23 21 39 39 H 1.09009 * 109.47191 * 329.99862 * 24 23 21 40 40 H 1.09005 * 109.46637 * 96.15854 * 25 23 21 41 41 H 1.09001 * 109.46534 * 216.15124 * 25 23 21 42 42 H 1.08994 * 109.47568 * 336.15286 * 25 23 21 43 43 H 1.08005 * 120.03360 * 179.72455 * 26 6 5 44 44 H 1.08000 * 119.97001 * 180.27773 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 3.4324 1.2816 -0.0005 5 6 4.0615 2.5087 0.0000 6 6 3.3035 3.6790 0.0005 7 6 3.9765 5.0000 0.0005 8 7 5.1021 5.3038 0.6062 9 7 5.4015 6.6479 0.3665 10 6 6.5790 7.3540 0.8776 11 6 6.6356 7.2163 2.3773 12 1 5.8712 6.6583 2.8975 13 6 7.6633 7.8028 3.0850 14 7 8.5939 8.4827 2.4515 15 14 7.7339 7.6316 4.9438 16 1 8.5130 6.4185 5.2999 17 1 8.3896 8.8298 5.5267 18 1 6.3554 7.5103 5.4825 19 6 4.4442 7.1948 -0.3975 20 6 3.5123 6.2157 -0.6747 21 6 2.2906 6.3638 -1.4837 22 8 1.8424 5.4088 -2.0888 23 7 1.6693 7.5579 -1.5534 24 6 0.4163 7.6890 -2.3010 25 6 2.2471 8.7245 -0.8817 26 6 1.9113 3.6042 0.0064 27 6 1.2882 2.3741 -0.0004 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0190 0.3748 -0.0005 32 1 5.1400 2.5633 -0.0008 33 1 7.4794 6.9239 0.4390 34 1 6.5136 8.4091 0.6118 35 1 9.3171 8.8949 2.9494 36 1 4.4102 8.2192 -0.7377 37 1 -0.4254 7.4949 -1.6362 38 1 0.3368 8.6991 -2.7026 39 1 0.4052 6.9704 -3.1206 40 1 2.8345 9.3012 -1.5962 41 1 1.4465 9.3475 -0.4828 42 1 2.8900 8.3930 -0.0664 43 1 1.3214 4.5090 0.0114 44 1 0.2098 2.3156 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:42 Heat of formation + Delta-G solvation = 40.929316 kcal Electronic energy + Delta-G solvation = -27648.737326 eV Core-core repulsion = 23761.825951 eV Total energy + Delta-G solvation = -3886.911376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.78185 -39.83975 -38.89646 -37.27180 -35.31086 -33.81598 -32.12311 -31.00911 -30.59758 -29.63376 -27.78435 -27.54700 -26.90696 -25.79824 -23.53102 -22.72104 -22.11652 -21.00206 -19.93708 -18.89544 -18.04036 -16.87367 -16.55506 -16.23372 -15.95410 -15.72990 -15.70892 -15.36058 -15.05034 -14.42249 -14.31050 -13.87893 -13.72078 -13.51118 -13.27939 -13.01730 -12.75243 -12.63811 -12.55436 -12.36502 -12.20626 -12.00744 -11.93372 -11.72835 -11.47408 -11.20347 -11.03643 -10.88995 -10.70461 -10.36659 -10.22411 -9.81798 -9.55663 -9.00753 -8.78394 -8.72241 -8.57837 -8.10620 -7.55206 -6.35740 -4.41698 1.36436 1.61275 2.10454 2.81261 3.07317 3.18476 3.24970 3.27718 3.29413 3.36261 3.63368 4.13351 4.22938 4.71776 4.88378 4.94904 5.00940 5.02346 5.06383 5.09104 5.13184 5.20832 5.29611 5.35114 5.49015 5.54194 5.57969 5.60835 5.72846 5.76357 5.80922 5.82610 5.99539 6.23824 6.32088 6.46804 6.58103 6.63596 6.84764 6.86095 6.90496 7.07973 7.46752 7.49705 7.53427 7.70852 7.73496 8.32200 8.50556 8.66228 9.25150 10.73167 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009589 B = 0.003862 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.418972 B = 7247.906005 C = 9501.011695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.157 4.157 5 C -0.051 4.051 6 C -0.035 4.035 7 C 0.139 3.861 8 N -0.260 5.260 9 N -0.312 5.312 10 C 0.250 3.750 11 C -0.533 4.533 12 H 0.071 0.929 13 C 0.065 3.935 14 N -0.893 5.893 15 Si 0.909 3.091 16 H -0.276 1.276 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.089 3.911 20 C -0.311 4.311 21 C 0.598 3.402 22 O -0.543 6.543 23 N -0.625 5.625 24 C 0.090 3.910 25 C 0.062 3.938 26 C -0.027 4.027 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.134 0.866 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.269 0.731 36 H 0.182 0.818 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.122 0.878 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.770 -4.466 -6.943 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.080 3.920 4 C -0.176 4.176 5 C -0.071 4.071 6 C -0.037 4.037 7 C -0.028 4.028 8 N -0.081 5.081 9 N -0.088 5.088 10 C 0.133 3.867 11 C -0.571 4.571 12 H 0.089 0.911 13 C -0.138 4.138 14 N -0.531 5.531 15 Si 0.736 3.264 16 H -0.202 1.202 17 H -0.209 1.209 18 H -0.196 1.196 19 C -0.064 4.064 20 C -0.327 4.327 21 C 0.389 3.611 22 O -0.421 6.421 23 N -0.359 5.359 24 C -0.053 4.053 25 C -0.081 4.081 26 C -0.047 4.047 27 C -0.229 4.229 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.199 0.801 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.140 0.860 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.613 -5.364 -6.431 16.843 hybrid contribution -0.665 0.882 0.467 1.199 sum -15.278 -4.481 -5.964 17.002 Atomic orbital electron populations 1.23015 0.78765 1.03524 1.01421 1.86031 1.21129 1.27289 1.88909 1.19076 0.92324 0.83865 0.96699 1.20252 0.91135 0.98348 1.07831 1.21039 1.00188 0.90331 0.95515 1.17578 0.92273 0.89087 1.04748 1.21586 0.92799 0.92160 0.96259 1.77455 1.14946 0.94332 1.21402 1.49257 1.19055 1.06567 1.33955 1.19925 0.79361 0.91176 0.96191 1.21199 1.11277 1.34708 0.89941 0.91105 1.24928 0.94793 0.94436 0.99679 1.69907 1.12939 1.33762 1.36489 0.86308 0.78560 0.77825 0.83749 1.20184 1.20930 1.19627 1.23272 0.89968 0.98691 0.94504 1.20868 1.01627 0.94264 1.15986 1.17357 0.82376 0.81765 0.79578 1.90746 1.67336 1.38475 1.45510 1.47569 1.24964 1.09726 1.53661 1.21540 0.85092 1.02044 0.96618 1.22272 0.99794 0.87926 0.98084 1.20812 0.93121 0.97011 0.93742 1.21017 0.99696 0.91991 1.10190 0.92732 0.92662 0.88559 0.85159 0.84781 0.93122 0.92370 0.92166 0.80103 0.93164 0.91649 0.90565 0.92516 0.91495 0.89024 0.85969 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -4.16 10.49 -19.32 -0.20 -4.36 16 3 C 0.13 1.84 6.69 -39.13 -0.26 1.58 16 4 C -0.16 -2.35 9.97 -39.48 -0.39 -2.74 16 5 C -0.05 -0.86 9.75 -39.26 -0.38 -1.24 16 6 C -0.03 -0.63 5.67 -104.89 -0.59 -1.23 16 7 C 0.14 2.79 6.93 -80.56 -0.56 2.23 16 8 N -0.26 -5.79 12.27 34.57 0.42 -5.37 16 9 N -0.31 -6.65 3.62 -62.03 -0.22 -6.88 16 10 C 0.25 5.88 6.21 -5.19 -0.03 5.85 16 11 C -0.53 -14.00 9.21 -34.44 -0.32 -14.32 16 12 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.14 13.29 55.43 0.74 -23.41 16 15 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.09 1.56 8.99 -16.64 -0.15 1.41 16 20 C -0.31 -5.70 5.75 -102.95 -0.59 -6.29 16 21 C 0.60 10.08 6.66 -12.59 -0.08 9.99 16 22 O -0.54 -10.33 14.18 5.26 0.07 -10.25 16 23 N -0.62 -8.19 3.27 -190.86 -0.62 -8.81 16 24 C 0.09 0.93 10.49 59.85 0.63 1.56 16 25 C 0.06 0.66 9.07 59.85 0.54 1.20 16 26 C -0.03 -0.45 8.01 -39.27 -0.31 -0.77 16 27 C -0.21 -3.05 9.02 -39.48 -0.36 -3.40 16 28 H 0.05 0.43 7.65 -51.93 -0.40 0.04 16 29 H 0.05 0.45 7.65 -51.93 -0.40 0.05 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 32 H 0.13 2.19 8.06 -52.49 -0.42 1.76 16 33 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.31 8.05 -51.92 -0.42 0.89 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.18 2.46 5.87 -52.49 -0.31 2.15 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.08 0.87 7.38 -51.92 -0.38 0.49 16 40 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 41 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.09 1.12 4.57 -51.93 -0.24 0.88 16 43 H 0.12 2.05 6.51 -52.48 -0.34 1.70 16 44 H 0.13 1.48 6.28 -52.49 -0.33 1.15 16 LS Contribution 370.38 15.07 5.58 5.58 Total: -1.00 -31.95 370.38 -6.95 -38.90 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.72 Total: 2.33 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.97 Total: -3.33 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.31 Total: -44.46 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.13 Total: -14.61 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.95 -6.95 -38.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.825 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds