Wall clock time and date at job start Tue Mar 31 2020 05:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46496 * 119.99759 * 2 1 4 4 C 1.50700 * 109.47432 * 84.99478 * 3 2 1 5 5 H 1.07999 * 119.99834 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00101 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00231 * 180.02562 * 6 4 3 8 8 Si 1.86804 * 119.99971 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47240 * 90.00028 * 8 6 4 10 10 H 1.48503 * 109.46865 * 209.99807 * 8 6 4 11 11 H 1.48501 * 109.47085 * 329.99891 * 8 6 4 12 12 S 1.65599 * 120.00145 * 179.97438 * 2 1 3 13 13 O 1.42101 * 104.27661 * 206.07137 * 12 2 1 14 14 O 1.42105 * 104.27788 * 333.93201 * 12 2 1 15 15 C 1.81398 * 104.44698 * 90.00384 * 12 2 1 16 16 C 1.53005 * 109.47212 * 180.02562 * 15 12 2 17 17 C 1.55925 * 115.84303 * 297.98769 * 16 15 12 18 18 C 1.58532 * 103.86200 * 199.48046 * 17 16 15 19 19 C 1.55976 * 103.69840 * 359.71242 * 18 17 16 20 20 H 1.09002 * 116.07886 * 161.40884 * 19 18 17 21 21 C 1.55963 * 104.31019 * 290.48647 * 19 18 17 22 22 C 1.52175 * 104.86704 * 71.21801 * 21 19 18 23 23 O 1.20765 * 127.32569 * 179.72109 * 22 21 19 24 24 C 1.56918 * 116.14203 * 179.08081 * 16 15 12 25 25 C 1.53001 * 112.08866 * 296.45198 * 24 16 15 26 26 C 1.52997 * 112.08953 * 63.13873 * 24 16 15 27 27 H 1.09001 * 109.47060 * 90.00688 * 1 2 3 28 28 H 1.09004 * 109.47073 * 210.00177 * 1 2 3 29 29 H 1.09000 * 109.47212 * 330.00260 * 1 2 3 30 30 H 1.08995 * 109.47319 * 204.99907 * 3 2 1 31 31 H 1.09007 * 109.47165 * 324.99657 * 3 2 1 32 32 H 0.96996 * 120.00304 * 180.02562 * 7 6 4 33 33 H 1.09007 * 109.46954 * 299.99742 * 15 12 2 34 34 H 1.08991 * 109.47563 * 59.99787 * 15 12 2 35 35 H 1.08997 * 110.41526 * 318.81125 * 17 16 15 36 36 H 1.09005 * 110.41648 * 81.26406 * 17 16 15 37 37 H 1.09001 * 111.06207 * 241.09536 * 18 17 16 38 38 H 1.08995 * 110.54111 * 118.08473 * 18 17 16 39 39 H 1.08998 * 110.36048 * 312.36799 * 21 19 18 40 40 H 1.08999 * 110.45379 * 190.10985 * 21 19 18 41 41 H 1.09000 * 109.47131 * 60.00270 * 25 24 16 42 42 H 1.09005 * 109.46844 * 179.97438 * 25 24 16 43 43 H 1.08991 * 109.46882 * 300.00140 * 25 24 16 44 44 H 1.09001 * 109.47210 * 59.99791 * 26 24 16 45 45 H 1.09005 * 109.47566 * 179.97438 * 26 24 16 46 46 H 1.08995 * 109.47404 * 300.00028 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 1.4154 5 1 1.9288 1.1936 2.2332 6 6 3.0005 2.9505 1.6663 7 7 3.1265 3.3841 2.9016 8 14 3.7146 3.9398 0.2519 9 1 2.6962 4.8997 -0.2447 10 1 4.9094 4.6854 0.7229 11 1 4.1060 3.0208 -0.8470 12 16 2.2931 -1.4341 0.0006 13 8 3.5396 -1.1188 0.6057 14 8 1.3970 -2.3559 0.6062 15 6 2.5195 -1.8268 -1.7558 16 6 3.2810 -3.1471 -1.8892 17 6 4.7215 -3.1642 -1.2925 18 6 5.4145 -4.3973 -2.0083 19 6 4.2952 -4.9630 -2.9356 20 1 4.6271 -5.6101 -3.7475 21 6 3.2527 -5.5769 -1.9512 22 6 2.5965 -4.3789 -1.2804 23 8 1.7234 -4.3941 -0.4463 24 6 3.5442 -3.6486 -3.3526 25 6 2.2440 -3.9602 -4.0966 26 6 4.4327 -2.6839 -4.1404 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.1857 1.1178 -0.4343 31 1 1.6501 2.0043 -0.5895 32 1 3.5899 4.2177 3.0781 33 1 1.5452 -1.9196 -2.2359 34 1 3.0867 -1.0296 -2.2362 35 1 5.2391 -2.2328 -1.5218 36 1 4.6848 -3.3245 -0.2150 37 1 5.7230 -5.1492 -1.2819 38 1 6.2677 -4.0660 -2.6000 39 1 3.7526 -6.2001 -1.2097 40 1 2.5106 -6.1595 -2.4970 41 1 1.6320 -3.0599 -4.1512 42 1 2.4757 -4.3033 -5.1049 43 1 1.6983 -4.7388 -3.5638 44 1 5.3947 -2.5833 -3.6379 45 1 4.5879 -3.0724 -5.1470 46 1 3.9490 -1.7088 -4.1976 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005699680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:21 Heat of formation + Delta-G solvation = -87.587760 kcal Electronic energy + Delta-G solvation = -28650.865719 eV Core-core repulsion = 24861.532625 eV Total energy + Delta-G solvation = -3789.333094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63762 -37.90683 -36.36316 -35.63522 -35.09470 -32.43690 -32.33550 -32.05470 -30.13492 -28.33766 -26.83072 -26.17369 -25.04404 -23.95166 -21.84686 -21.63415 -19.32505 -18.50192 -17.83160 -16.94654 -16.81589 -16.28294 -15.93167 -15.87311 -15.42917 -15.26606 -14.44377 -14.22471 -14.15050 -13.72952 -13.53548 -13.32376 -13.07670 -12.95473 -12.75866 -12.50427 -12.40709 -12.33111 -12.28972 -12.02347 -11.72023 -11.61238 -11.47302 -11.34009 -11.23621 -11.16563 -11.07335 -11.05258 -10.69030 -10.55564 -10.53050 -10.46095 -10.19454 -10.00332 -9.49233 -9.24287 -8.56361 -8.02942 -6.04195 -4.02708 0.83439 1.87506 3.26440 3.30698 3.33481 3.39511 3.65015 3.86989 4.10170 4.23531 4.40312 4.42428 4.58016 4.65486 4.71562 4.81472 4.84588 4.94817 5.01275 5.10143 5.20753 5.24908 5.35191 5.40534 5.43888 5.49642 5.52769 5.59094 5.64371 5.64991 5.70890 5.75352 5.78427 5.91004 5.96771 5.99913 6.01772 6.14427 6.28213 6.50463 6.70738 7.09003 7.39883 7.44381 7.61490 8.54140 9.02713 9.54583 11.09702 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018307 B = 0.004434 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.089631 B = 6313.771980 C = 6793.835551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.986 5.986 3 C 0.225 3.775 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.265 1.265 12 S 2.598 3.402 13 O -0.935 6.935 14 O -0.938 6.938 15 C -0.617 4.617 16 C -0.108 4.108 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.089 4.089 20 H 0.112 0.888 21 C -0.174 4.174 22 C 0.339 3.661 23 O -0.387 6.387 24 C -0.046 4.046 25 C -0.147 4.147 26 C -0.139 4.139 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.264 0.736 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 -16.449 -18.475 24.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.825 5.825 3 C 0.101 3.899 4 C -0.565 4.565 5 H 0.096 0.904 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.190 1.190 12 S 2.687 3.313 13 O -0.925 6.925 14 O -0.928 6.928 15 C -0.741 4.741 16 C -0.111 4.111 17 C -0.165 4.165 18 C -0.158 4.158 19 C -0.107 4.107 20 H 0.130 0.870 21 C -0.212 4.212 22 C 0.209 3.791 23 O -0.254 6.254 24 C -0.048 4.048 25 C -0.204 4.204 26 C -0.196 4.196 27 H 0.056 0.944 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.154 0.846 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.817 -16.765 -17.146 24.049 hybrid contribution 0.310 0.997 -1.391 1.739 sum 2.127 -15.768 -18.537 24.429 Atomic orbital electron populations 1.21414 0.79767 1.04223 1.00106 1.57226 1.14316 1.22078 1.88896 1.19459 0.90856 0.80854 0.98718 1.21373 1.36483 1.06790 0.91872 0.90369 1.24876 0.95468 0.97216 0.95490 1.69898 1.42772 1.21948 1.18838 0.86926 0.79383 0.80695 0.83149 1.20044 1.20840 1.18988 1.05524 0.75106 0.73642 0.76993 1.93630 1.44296 1.82807 1.71757 1.93628 1.64336 1.62584 1.72268 1.30478 1.08594 1.03583 1.31485 1.23095 0.96695 0.92293 0.98982 1.23465 0.92154 1.00352 1.00510 1.23370 0.97457 0.96817 0.98161 1.23598 0.94627 0.95696 0.96788 0.86957 1.23180 0.99960 0.98001 1.00028 1.25644 0.80805 0.92692 0.79977 1.90735 1.23228 1.87555 1.23920 1.22386 0.95760 0.94807 0.91804 1.21843 0.96252 1.02055 1.00222 1.21727 0.99683 0.98764 0.99396 0.94393 0.90871 0.90109 0.94979 0.95405 0.92574 0.85239 0.84615 0.88776 0.90374 0.90753 0.90481 0.88211 0.88227 0.91971 0.91695 0.92298 0.91427 0.92104 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.66 59.85 0.64 2.25 16 2 N -0.99 -20.69 3.10 -123.05 -0.38 -21.08 16 3 C 0.22 5.36 4.06 -5.20 -0.02 5.34 16 4 C -0.53 -15.35 9.94 -34.44 -0.34 -15.69 16 5 H 0.08 2.54 8.06 -52.49 -0.42 2.11 16 6 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 7 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 8 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 12 S 2.60 52.24 4.92 -107.50 -0.53 51.71 16 13 O -0.93 -22.08 15.98 -57.54 -0.92 -22.99 16 14 O -0.94 -20.82 13.33 -67.06 -0.89 -21.71 16 15 C -0.62 -8.66 5.55 37.16 0.21 -8.46 16 16 C -0.11 -1.36 0.46 -150.56 -0.07 -1.43 16 17 C -0.13 -1.55 4.40 -22.11 -0.10 -1.65 16 18 C -0.12 -1.00 5.75 -22.08 -0.13 -1.13 16 19 C -0.09 -0.66 4.50 -85.27 -0.38 -1.04 16 20 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 21 C -0.17 -1.57 5.45 -25.57 -0.14 -1.71 16 22 C 0.34 4.63 5.70 -26.88 -0.15 4.48 16 23 O -0.39 -6.97 14.50 -17.95 -0.26 -7.23 16 24 C -0.05 -0.41 0.79 -150.21 -0.12 -0.53 16 25 C -0.15 -1.19 8.47 37.16 0.31 -0.87 16 26 C -0.14 -1.10 8.52 37.16 0.32 -0.78 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.29 6.91 -51.93 -0.36 0.93 16 29 H 0.08 1.46 8.07 -51.93 -0.42 1.05 16 30 H 0.03 0.76 6.66 -51.93 -0.35 0.41 16 31 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.13 1.56 7.51 -51.92 -0.39 1.17 16 34 H 0.14 1.67 7.58 -51.93 -0.39 1.27 16 35 H 0.09 1.13 7.65 -51.93 -0.40 0.73 16 36 H 0.08 1.10 7.72 -51.93 -0.40 0.70 16 37 H 0.07 0.56 7.84 -51.93 -0.41 0.15 16 38 H 0.08 0.53 7.31 -51.93 -0.38 0.15 16 39 H 0.10 0.80 7.82 -51.93 -0.41 0.40 16 40 H 0.10 0.74 7.20 -51.93 -0.37 0.36 16 41 H 0.06 0.53 7.48 -51.93 -0.39 0.14 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.49 5.71 -51.93 -0.30 0.19 16 44 H 0.07 0.52 5.58 -51.93 -0.29 0.23 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.52 7.52 -51.93 -0.39 0.13 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -37.17 358.76 -8.86 -46.02 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.31 Total: -0.20 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -0.07 Total: -19.20 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.39 Total: -48.26 kcal Atomic # 8 Polarization: -49.86 SS G_CDS: -2.07 Total: -51.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 52.24 SS G_CDS: -0.53 Total: 51.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.17 -8.86 -46.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005699680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.565 kcal (2) G-P(sol) polarization free energy of solvation -37.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds