Wall clock time and date at job start Tue Mar 31 2020 05:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46494 * 119.99999 * 2 1 4 4 C 1.50704 * 109.47256 * 275.00279 * 3 2 1 5 5 H 1.08006 * 119.99758 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00438 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99991 * 179.97438 * 6 4 3 8 8 Si 1.86802 * 119.99699 * 359.97438 * 6 4 3 9 9 H 1.48506 * 109.46968 * 90.00217 * 8 6 4 10 10 H 1.48493 * 109.47093 * 209.99907 * 8 6 4 11 11 H 1.48500 * 109.47364 * 330.00508 * 8 6 4 12 12 S 1.65598 * 120.00079 * 179.97438 * 2 1 3 13 13 O 1.42104 * 104.27735 * 333.92765 * 12 2 1 14 14 O 1.42101 * 104.28162 * 206.06956 * 12 2 1 15 15 C 1.81402 * 104.44872 * 89.99661 * 12 2 1 16 16 C 1.53004 * 109.47033 * 179.97438 * 15 12 2 17 17 C 1.55922 * 115.84550 * 61.01887 * 16 15 12 18 18 C 1.54617 * 104.58132 * 159.95831 * 17 16 15 19 19 C 1.55975 * 104.46548 * 0.32990 * 18 17 16 20 20 H 1.08996 * 116.07949 * 198.28126 * 19 18 17 21 21 C 1.55961 * 104.30754 * 69.20547 * 19 18 17 22 22 C 1.52178 * 104.96702 * 289.56646 * 21 19 18 23 23 O 1.20752 * 127.33050 * 180.34275 * 22 21 19 24 24 C 1.56930 * 116.13921 * 178.89069 * 16 15 12 25 25 C 1.53003 * 112.08422 * 63.54677 * 24 16 15 26 26 C 1.53000 * 112.09085 * 296.86291 * 24 16 15 27 27 H 1.09010 * 109.47194 * 269.99726 * 1 2 3 28 28 H 1.09000 * 109.47318 * 30.00035 * 1 2 3 29 29 H 1.09007 * 109.47410 * 150.00478 * 1 2 3 30 30 H 1.09007 * 109.47348 * 34.99645 * 3 2 1 31 31 H 1.08996 * 109.47423 * 155.00325 * 3 2 1 32 32 H 0.97003 * 119.99456 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47160 * 60.00081 * 15 12 2 34 34 H 1.08993 * 109.47605 * 299.99983 * 15 12 2 35 35 H 1.08992 * 110.41581 * 41.18426 * 17 16 15 36 36 H 1.08994 * 110.51733 * 278.78195 * 17 16 15 37 37 H 1.09001 * 110.43654 * 241.57824 * 18 17 16 38 38 H 1.09000 * 110.43476 * 119.07682 * 18 17 16 39 39 H 1.09002 * 110.36063 * 48.46860 * 21 19 18 40 40 H 1.09001 * 110.35889 * 170.66257 * 21 19 18 41 41 H 1.08999 * 109.46920 * 167.78448 * 25 24 16 42 42 H 1.08990 * 109.47314 * 287.78498 * 25 24 16 43 43 H 1.09007 * 109.46848 * 47.78604 * 25 24 16 44 44 H 1.09004 * 109.46704 * 312.21357 * 26 24 16 45 45 H 1.08997 * 109.47010 * 72.20838 * 26 24 16 46 46 H 1.08999 * 109.47118 * 192.21776 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7657 -1.4154 5 1 1.9288 1.1934 -2.2333 6 6 3.0005 2.9503 -1.6665 7 7 3.1265 3.3837 -2.9018 8 14 3.7147 3.9397 -0.2521 9 1 5.1117 3.5041 0.0010 10 1 3.7019 5.3829 -0.6014 11 1 2.8985 3.7185 0.9686 12 16 2.2930 -1.4341 0.0006 13 8 1.3970 -2.3559 0.6063 14 8 3.5395 -1.1189 0.6057 15 6 2.5192 -1.8269 -1.7558 16 6 3.2819 -3.1466 -1.8892 17 6 2.5878 -4.3983 -1.2706 18 6 3.2614 -5.6020 -1.9692 19 6 4.3030 -4.9587 -2.9356 20 1 4.6690 -5.5972 -3.7396 21 6 5.3871 -4.3577 -1.9891 22 6 4.7091 -3.1723 -1.3176 23 8 5.1899 -2.4155 -0.5088 24 6 3.5410 -3.6506 -3.3526 25 6 4.4341 -2.6912 -4.1417 26 6 2.2385 -3.9554 -4.0952 27 1 -0.3634 0.0000 1.0278 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8901 -0.5138 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4342 32 1 3.5900 4.2174 -3.0783 33 1 3.0865 -1.0298 -2.2363 34 1 1.5451 -1.9198 -2.2358 35 1 1.5190 -4.3845 -1.4836 36 1 2.7598 -4.4381 -0.1950 37 1 2.5251 -6.1768 -2.5311 38 1 3.7620 -6.2356 -1.2371 39 1 5.6900 -5.0934 -1.2440 40 1 6.2506 -4.0245 -2.5649 41 1 4.7634 -3.1748 -5.0614 42 1 3.8723 -1.7898 -4.3862 43 1 5.3032 -2.4256 -3.5396 44 1 1.5922 -4.5623 -3.4611 45 1 1.7332 -3.0214 -4.3409 46 1 2.4622 -4.4998 -5.0127 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005699690.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:25 Heat of formation + Delta-G solvation = -94.101071 kcal Electronic energy + Delta-G solvation = -28954.044967 eV Core-core repulsion = 25164.429434 eV Total energy + Delta-G solvation = -3789.615532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.149 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.56599 -37.76665 -36.44418 -35.65447 -35.17080 -32.45341 -32.26473 -31.92450 -30.09551 -28.37772 -26.66880 -25.94497 -25.10780 -23.83126 -21.83929 -21.45556 -19.16737 -18.36784 -17.85194 -17.00102 -16.76525 -16.22176 -15.86480 -15.73526 -15.40665 -15.21162 -14.36189 -14.16849 -14.04082 -13.66930 -13.42518 -13.09670 -13.01070 -12.78649 -12.59461 -12.50819 -12.39619 -12.31735 -12.15820 -11.84111 -11.73154 -11.51026 -11.45321 -11.29534 -11.26717 -11.16765 -11.04069 -10.93072 -10.66852 -10.56803 -10.43467 -10.37275 -10.16494 -9.84420 -9.58862 -9.08396 -8.64903 -8.01863 -6.17339 -4.18137 0.92102 2.06276 3.27430 3.33716 3.38670 3.40356 3.81100 4.04573 4.20729 4.32997 4.36562 4.53207 4.70022 4.79727 4.86117 4.96929 5.00371 5.10707 5.15907 5.21253 5.27509 5.29504 5.48728 5.51869 5.57058 5.63725 5.69998 5.75529 5.75545 5.81434 5.88815 5.91455 5.99387 6.02000 6.06448 6.15307 6.21164 6.26718 6.34309 6.46981 6.89992 7.13210 7.39910 7.55014 7.62492 8.38845 8.82675 9.44159 10.94915 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.015212 B = 0.005157 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.156776 B = 5427.830880 C = 5945.366417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.986 5.986 3 C 0.211 3.789 4 C -0.547 4.547 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.869 3.131 9 H -0.270 1.270 10 H -0.284 1.284 11 H -0.262 1.262 12 S 2.604 3.396 13 O -0.977 6.977 14 O -0.930 6.930 15 C -0.600 4.600 16 C -0.109 4.109 17 C -0.127 4.127 18 C -0.121 4.121 19 C -0.089 4.089 20 H 0.113 0.887 21 C -0.174 4.174 22 C 0.340 3.660 23 O -0.385 6.385 24 C -0.045 4.045 25 C -0.146 4.146 26 C -0.139 4.139 27 H 0.046 0.954 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -17.840 -2.791 18.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.825 5.825 3 C 0.087 3.913 4 C -0.586 4.586 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.532 5.532 8 Si 0.696 3.304 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.187 1.187 12 S 2.696 3.304 13 O -0.967 6.967 14 O -0.920 6.920 15 C -0.727 4.727 16 C -0.111 4.111 17 C -0.164 4.164 18 C -0.158 4.158 19 C -0.107 4.107 20 H 0.131 0.869 21 C -0.212 4.212 22 C 0.210 3.790 23 O -0.253 6.253 24 C -0.046 4.046 25 C -0.203 4.203 26 C -0.196 4.196 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.167 0.833 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.434 -17.710 -1.659 17.793 hybrid contribution 0.202 0.952 -0.306 1.020 sum -0.232 -16.758 -1.965 16.875 Atomic orbital electron populations 1.21274 0.79795 1.02335 1.00880 1.57173 1.14105 1.22218 1.88982 1.19638 0.92542 0.80802 0.98314 1.21470 1.37362 1.07793 0.91935 0.90328 1.24840 0.95119 0.97106 0.95553 1.69889 1.42338 1.22070 1.18898 0.86936 0.80772 0.79497 0.83237 1.19537 1.20985 1.18673 1.05128 0.74352 0.73444 0.77501 1.93516 1.65484 1.63909 1.73806 1.93647 1.43160 1.82402 1.72823 1.30299 1.08974 1.03711 1.29719 1.23190 0.95316 0.93538 0.99073 1.22791 1.01042 0.92453 1.00158 1.22702 0.98191 0.96807 0.98114 1.23618 0.94401 0.95811 0.96846 0.86923 1.23164 0.99810 0.98020 1.00159 1.25617 0.89559 0.84242 0.79557 1.90717 1.70403 1.39323 1.24829 1.22392 0.96092 0.94262 0.91860 1.21806 0.99425 0.99367 0.99694 1.21747 0.95838 1.02180 0.99794 0.93524 0.90593 0.92624 0.94473 0.93398 0.92457 0.83257 0.84991 0.89183 0.90799 0.90602 0.91066 0.88443 0.88193 0.91879 0.91239 0.92464 0.91716 0.91892 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.79 10.22 59.85 0.61 2.40 16 2 N -0.99 -20.71 3.10 -123.05 -0.38 -21.09 16 3 C 0.21 5.11 4.46 -5.19 -0.02 5.09 16 4 C -0.55 -14.75 9.94 -34.44 -0.34 -15.09 16 5 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 6 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 8 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 9 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 12 S 2.60 52.68 4.94 -107.50 -0.53 52.15 16 13 O -0.98 -19.58 16.04 -57.54 -0.92 -20.51 16 14 O -0.93 -22.29 13.51 -66.87 -0.90 -23.20 16 15 C -0.60 -10.03 5.68 37.16 0.21 -9.82 16 16 C -0.11 -1.55 0.47 -150.42 -0.07 -1.62 16 17 C -0.13 -1.55 4.17 -24.32 -0.10 -1.66 16 18 C -0.12 -1.06 5.56 -24.29 -0.14 -1.20 16 19 C -0.09 -0.78 4.56 -85.27 -0.39 -1.17 16 20 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 21 C -0.17 -1.87 5.45 -25.57 -0.14 -2.01 16 22 C 0.34 5.38 5.58 -26.75 -0.15 5.24 16 23 O -0.39 -7.91 14.78 -17.42 -0.26 -8.16 16 24 C -0.04 -0.50 0.79 -150.20 -0.12 -0.61 16 25 C -0.15 -1.73 8.42 37.16 0.31 -1.41 16 26 C -0.14 -1.32 8.34 37.16 0.31 -1.01 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 28 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 29 H 0.06 0.82 7.79 -51.93 -0.40 0.41 16 30 H 0.04 0.88 7.17 -51.93 -0.37 0.51 16 31 H 0.05 1.23 6.24 -51.93 -0.32 0.90 16 32 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.15 2.77 8.06 -51.92 -0.42 2.35 16 34 H 0.13 1.85 7.93 -51.93 -0.41 1.44 16 35 H 0.09 1.02 7.28 -51.93 -0.38 0.64 16 36 H 0.07 1.00 7.74 -51.93 -0.40 0.60 16 37 H 0.08 0.54 7.49 -51.93 -0.39 0.15 16 38 H 0.07 0.56 7.85 -51.93 -0.41 0.15 16 39 H 0.10 0.90 7.84 -51.93 -0.41 0.49 16 40 H 0.10 0.97 7.53 -51.93 -0.39 0.58 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.73 5.95 -51.93 -0.31 0.42 16 44 H 0.06 0.56 5.39 -51.93 -0.28 0.28 16 45 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -34.34 361.14 -9.01 -43.35 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -7.44 Total: 1.69 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.12 Total: -20.80 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.39 Total: -46.62 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.08 Total: -51.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 52.68 SS G_CDS: -0.53 Total: 52.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.34 -9.01 -43.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005699690.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.752 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds