Wall clock time and date at job start Tue Mar 31 2020 05:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.50835 * 2 1 4 4 C 1.53099 * 109.50389 * 239.92069 * 2 1 3 5 5 N 1.47009 * 109.26101 * 183.21569 * 4 2 1 6 6 C 1.46901 * 111.00618 * 182.38867 * 5 4 2 7 7 C 1.50696 * 109.47328 * 169.99681 * 6 5 4 8 8 N 1.29831 * 118.34834 * 359.97438 * 7 6 5 9 9 C 1.35643 * 121.62180 * 179.97438 * 8 7 6 10 10 C 1.39628 * 121.61888 * 180.02562 * 9 8 7 11 11 C 1.37702 * 119.69423 * 179.97438 * 10 9 8 12 12 C 1.38878 * 120.82439 * 0.02562 * 11 10 9 13 13 C 1.37789 * 120.57601 * 359.97438 * 12 11 10 14 14 C 1.39368 * 119.51167 * 0.02562 * 13 12 11 15 15 C 1.46975 * 121.90764 * 180.25786 * 14 13 12 16 16 O 1.21722 * 121.28419 * 359.97438 * 15 14 13 17 17 N 1.35338 * 117.42283 * 180.22437 * 15 14 13 18 18 C 1.37102 * 119.71310 * 179.76655 * 17 15 14 19 19 H 1.08004 * 120.00375 * 140.14740 * 18 17 15 20 20 C 1.39080 * 120.00409 * 320.14701 * 18 17 15 21 21 N 1.31252 * 120.00191 * 146.67030 * 20 18 17 22 22 Si 1.86801 * 119.99545 * 326.94877 * 20 18 17 23 23 H 1.48502 * 109.47332 * 273.95002 * 22 20 18 24 24 H 1.48498 * 109.47126 * 33.94821 * 22 20 18 25 25 H 1.48500 * 109.47181 * 153.94999 * 22 20 18 26 26 C 1.47015 * 110.75330 * 58.60874 * 5 4 2 27 27 C 1.53097 * 109.26080 * 301.38875 * 26 5 4 28 28 O 1.43008 * 109.51105 * 120.13692 * 2 1 3 29 29 H 1.08997 * 109.47257 * 180.08524 * 1 2 3 30 30 H 1.09001 * 109.46578 * 300.08249 * 1 2 3 31 31 H 1.08997 * 109.47615 * 60.08366 * 1 2 3 32 32 H 1.09003 * 109.51268 * 63.27741 * 4 2 1 33 33 H 1.09001 * 109.54039 * 303.17062 * 4 2 1 34 34 H 1.09002 * 109.46678 * 49.99875 * 6 5 4 35 35 H 1.08998 * 109.46892 * 290.00033 * 6 5 4 36 36 H 1.08004 * 120.15210 * 0.02562 * 10 9 8 37 37 H 1.08003 * 119.59169 * 179.97438 * 11 10 9 38 38 H 1.08007 * 119.71445 * 180.02562 * 12 11 10 39 39 H 1.07992 * 120.24578 * 180.02562 * 13 12 11 40 40 H 0.97008 * 119.99886 * 180.27862 * 21 20 18 41 41 H 1.09006 * 109.50342 * 61.32669 * 26 5 4 42 42 H 1.09003 * 109.50832 * 181.45001 * 26 5 4 43 43 H 1.08999 * 109.50643 * 296.90929 * 27 26 5 44 44 H 1.09003 * 109.50824 * 176.77838 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2488 5 7 3.5092 -0.7879 -1.2050 6 6 4.0445 -1.4258 -2.4152 7 6 5.5415 -1.2562 -2.4522 8 7 6.1134 -0.6146 -1.4791 9 6 7.4560 -0.4238 -1.4452 10 6 8.0711 0.2657 -0.3984 11 6 9.4375 0.4360 -0.4036 12 6 10.2137 -0.0694 -1.4385 13 6 9.6302 -0.7534 -2.4827 14 6 8.2487 -0.9368 -2.4965 15 6 7.5722 -1.6626 -3.5809 16 8 8.1978 -2.1329 -4.5131 17 7 6.2264 -1.7832 -3.5054 18 6 5.5470 -2.4470 -4.4941 19 1 4.7233 -3.0977 -4.2401 20 6 5.9185 -2.2824 -5.8242 21 7 5.7994 -3.2813 -6.6673 22 14 6.5944 -0.6421 -6.4090 23 1 5.4692 0.2515 -6.7842 24 1 7.3825 -0.0142 -5.3182 25 1 7.4686 -0.8594 -7.5895 26 6 3.9640 -1.4883 0.0049 27 6 3.4335 -0.7573 1.2411 28 8 2.0076 -0.6768 1.1658 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3632 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8907 32 1 1.7272 -0.1785 -2.1392 33 1 1.6331 -1.7336 -1.2776 34 1 3.6042 -0.9597 -3.2966 35 1 3.7993 -2.4878 -2.4049 36 1 7.4780 0.6629 0.4121 37 1 9.9116 0.9700 0.4067 38 1 11.2841 0.0741 -1.4243 39 1 10.2389 -1.1446 -3.2844 40 1 6.0624 -3.1677 -7.5941 41 1 3.5866 -2.5110 -0.0031 42 1 5.0536 -1.5020 0.0297 43 1 3.8535 0.2478 1.2776 44 1 3.7202 -1.3051 2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000024014594.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:55 Heat of formation + Delta-G solvation = -0.956700 kcal Electronic energy + Delta-G solvation = -29036.992226 eV Core-core repulsion = 25148.264536 eV Total energy + Delta-G solvation = -3888.727690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.87614 -39.44189 -37.85175 -36.94016 -35.17438 -33.93182 -32.72304 -32.33689 -30.63922 -29.99826 -28.56088 -26.97161 -25.93347 -24.55414 -23.09515 -22.82538 -21.52683 -21.01209 -20.16581 -18.90777 -18.01450 -17.25005 -16.25717 -16.08691 -15.89856 -15.31282 -15.23104 -14.84143 -14.67257 -14.48847 -14.22057 -14.07780 -13.58760 -13.49164 -13.09787 -13.01753 -12.86381 -12.65947 -12.51635 -12.33993 -12.23639 -11.73532 -11.50659 -11.42630 -11.25828 -11.18138 -11.04689 -10.91295 -10.71699 -10.37538 -10.26334 -9.62761 -9.44295 -9.17110 -8.92684 -8.68260 -8.54032 -8.08827 -7.28686 -6.94688 -4.57952 1.27888 1.42943 2.90924 3.03651 3.14205 3.21332 3.55218 3.59477 3.84512 4.04899 4.16907 4.47538 4.66453 4.86015 4.90422 5.10339 5.16190 5.19617 5.23554 5.31373 5.37849 5.42095 5.51261 5.60146 5.61801 5.69773 5.70951 5.76656 5.81432 5.93504 5.93759 6.01586 6.08961 6.18382 6.20962 6.36154 6.51773 6.63361 6.87120 6.89096 7.08641 7.17620 7.21774 7.33842 7.36708 7.39497 7.88411 8.24135 8.56054 8.92493 9.11333 10.07375 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010840 B = 0.005281 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.512671 B = 5300.954049 C = 7352.792007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.092 3.908 3 H 0.066 0.934 4 C 0.023 3.977 5 N -0.515 5.515 6 C 0.124 3.876 7 C 0.355 3.645 8 N -0.537 5.537 9 C 0.166 3.834 10 C -0.127 4.127 11 C -0.087 4.087 12 C -0.173 4.173 13 C -0.038 4.038 14 C -0.215 4.215 15 C 0.508 3.492 16 O -0.522 6.522 17 N -0.361 5.361 18 C -0.398 4.398 19 H 0.119 0.881 20 C 0.120 3.880 21 N -0.793 5.793 22 Si 0.899 3.101 23 H -0.279 1.279 24 H -0.266 1.266 25 H -0.275 1.275 26 C 0.016 3.984 27 C 0.070 3.930 28 O -0.390 6.390 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.125 0.875 40 H 0.287 0.713 41 H 0.029 0.971 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 6.499 11.378 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.106 4.106 5 N -0.240 5.240 6 C -0.005 4.005 7 C 0.094 3.906 8 N -0.264 5.264 9 C 0.049 3.951 10 C -0.147 4.147 11 C -0.106 4.106 12 C -0.192 4.192 13 C -0.058 4.058 14 C -0.222 4.222 15 C 0.304 3.696 16 O -0.399 6.399 17 N -0.064 5.064 18 C -0.523 4.523 19 H 0.136 0.864 20 C -0.100 4.100 21 N -0.419 5.419 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.190 1.190 25 H -0.200 1.200 26 C -0.112 4.112 27 C -0.007 4.007 28 O -0.309 6.309 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.143 0.857 40 H 0.097 0.903 41 H 0.047 0.953 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.533 6.768 11.323 13.949 hybrid contribution 0.865 -0.475 -1.434 1.741 sum -3.668 6.293 9.889 12.282 Atomic orbital electron populations 1.21746 0.93219 1.02780 1.02393 1.22091 0.94317 0.95729 0.84469 0.91590 1.22825 0.88320 1.00113 0.99304 1.61873 1.07207 1.53234 1.01681 1.20776 0.87622 0.98443 0.93640 1.22712 0.94404 0.87736 0.85791 1.68468 1.08810 1.23318 1.25773 1.18860 0.89178 0.94258 0.92759 1.20613 0.94019 1.01705 0.98392 1.21022 0.93544 0.98270 0.97804 1.20871 0.99443 1.03101 0.95788 1.20907 0.93007 0.94696 0.97175 1.20734 0.95756 1.07420 0.98328 1.18434 0.81747 0.82193 0.87180 1.90648 1.64628 1.49596 1.35076 1.42494 1.06478 1.38836 1.18602 1.19157 1.19710 1.28212 0.85238 0.86354 1.25220 0.91851 0.97432 0.95540 1.69809 1.36386 1.29483 1.06206 0.86461 0.78822 0.82790 0.79486 1.20574 1.19017 1.19958 1.22980 1.03862 0.94586 0.89765 1.22612 0.80194 1.00584 0.97316 1.87924 1.21760 1.78438 1.42796 0.91996 0.91840 0.91012 0.89700 0.94140 0.87373 0.92016 0.85469 0.86261 0.86388 0.85737 0.90279 0.95269 0.86856 0.92148 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.57 37.16 0.36 -0.98 16 2 C 0.09 1.09 3.43 -26.68 -0.09 1.00 16 3 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 4 C 0.02 0.29 4.93 -3.71 -0.02 0.27 16 5 N -0.52 -7.91 4.38 -235.75 -1.03 -8.94 16 6 C 0.12 2.16 4.07 -4.98 -0.02 2.14 16 7 C 0.36 7.41 7.21 -154.87 -1.12 6.29 16 8 N -0.54 -10.70 7.10 -8.10 -0.06 -10.76 16 9 C 0.17 3.34 6.63 -84.49 -0.56 2.78 16 10 C -0.13 -2.10 10.03 -39.26 -0.39 -2.50 16 11 C -0.09 -1.26 10.00 -39.54 -0.40 -1.66 16 12 C -0.17 -2.70 10.02 -39.51 -0.40 -3.10 16 13 C -0.04 -0.74 9.68 -39.33 -0.38 -1.12 16 14 C -0.21 -4.77 5.89 -104.77 -0.62 -5.39 16 15 C 0.51 12.91 5.49 -12.47 -0.07 12.84 16 16 O -0.52 -14.57 13.35 5.17 0.07 -14.51 16 17 N -0.36 -8.72 2.32 -59.56 -0.14 -8.86 16 18 C -0.40 -10.11 8.61 -14.88 -0.13 -10.24 16 19 H 0.12 2.96 7.16 -52.48 -0.38 2.58 16 20 C 0.12 3.16 4.43 -17.49 -0.08 3.09 16 21 N -0.79 -21.30 13.95 55.50 0.77 -20.53 16 22 Si 0.90 22.03 26.24 -169.99 -4.46 17.57 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.92 5.81 56.52 0.33 -6.59 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 C 0.02 0.24 5.24 -3.71 -0.02 0.22 16 27 C 0.07 0.89 7.01 37.21 0.26 1.16 16 28 O -0.39 -5.28 10.47 -35.23 -0.37 -5.65 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.11 1.84 7.94 -51.93 -0.41 1.43 16 35 H 0.06 1.06 7.55 -51.93 -0.39 0.67 16 36 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 37 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 38 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 39 H 0.12 2.38 7.83 -52.49 -0.41 1.97 16 40 H 0.29 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.11 1.85 5.65 -51.93 -0.29 1.56 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -29.93 351.90 -9.74 -39.68 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.16 Total: 1.88 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: -3.67 Total: 4.80 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.45 Total: -49.08 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.30 Total: -20.16 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.46 Total: 17.57 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.93 -9.74 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000024014594.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.719 kcal (2) G-P(sol) polarization free energy of solvation -29.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds