Wall clock time and date at job start Tue Mar 31 2020 05:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39589 * 120.10888 * 221.07223 * 3 2 1 5 5 C 1.37990 * 120.00176 * 179.97438 * 4 3 2 6 6 C 1.38243 * 120.21802 * 359.75540 * 5 4 3 7 7 C 1.38949 * 120.20969 * 0.50370 * 6 5 4 8 8 N 1.39943 * 119.99668 * 179.76840 * 7 6 5 9 9 C 1.34779 * 120.00241 * 214.82246 * 8 7 6 10 10 O 1.21290 * 119.99892 * 355.39321 * 9 8 7 11 11 C 1.50695 * 120.00150 * 175.38600 * 9 8 7 12 12 N 1.46903 * 109.47389 * 180.02562 * 11 9 8 13 13 C 1.46900 * 110.99566 * 66.04401 * 12 11 9 14 14 C 1.46893 * 111.00379 * 189.99793 * 12 11 9 15 15 C 1.50700 * 109.47006 * 169.99865 * 14 12 11 16 16 O 1.21279 * 120.00282 * 0.02562 * 15 14 12 17 17 N 1.34784 * 119.99979 * 180.02562 * 15 14 12 18 18 C 1.46497 * 120.00255 * 180.02562 * 17 15 14 19 19 C 1.50692 * 109.47492 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00027 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00272 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99917 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47429 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46862 * 120.00230 * 23 21 19 26 26 H 1.48497 * 109.47479 * 239.99755 * 23 21 19 27 27 C 1.38639 * 120.00240 * 359.49136 * 7 6 5 28 28 H 4.52046 * 14.02949 * 359.97438 * 4 2 1 29 29 H 1.08002 * 119.99954 * 359.96411 * 4 3 2 30 30 H 1.07999 * 119.89287 * 180.02562 * 5 4 3 31 31 H 1.07996 * 119.89459 * 180.24989 * 6 5 4 32 32 H 0.97005 * 120.00359 * 34.83015 * 8 7 6 33 33 H 1.09003 * 109.47533 * 60.00352 * 11 9 8 34 34 H 1.09002 * 109.47448 * 299.99863 * 11 9 8 35 35 H 1.08998 * 109.47276 * 60.00535 * 13 12 11 36 36 H 1.09002 * 109.46830 * 180.02562 * 13 12 11 37 37 H 1.08998 * 109.47730 * 300.00007 * 13 12 11 38 38 H 1.08992 * 109.47570 * 290.00246 * 14 12 11 39 39 H 1.09006 * 109.47206 * 50.00398 * 14 12 11 40 40 H 0.96995 * 119.99769 * 0.02562 * 17 15 14 41 41 H 1.09002 * 109.47249 * 300.00381 * 18 17 15 42 42 H 1.09006 * 109.46937 * 59.99313 * 18 17 15 43 43 H 0.96992 * 120.00144 * 180.02562 * 22 21 19 44 44 H 1.08003 * 120.10436 * 180.23186 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3058 0.9113 0.7934 5 6 4.6857 0.9096 0.7921 6 6 5.3796 0.0047 0.0106 7 6 4.6921 -0.9022 -0.7866 8 7 5.3991 -1.8131 -1.5796 9 6 4.9154 -2.1749 -2.7844 10 8 3.8282 -1.7769 -3.1459 11 6 5.7255 -3.0739 -3.6825 12 7 4.9853 -3.3179 -4.9278 13 6 4.8440 -2.0807 -5.7071 14 6 5.6280 -4.3714 -5.7245 15 6 4.7206 -4.7656 -6.8613 16 8 3.6447 -4.2220 -6.9949 17 7 5.1047 -5.7222 -7.7296 18 6 4.2229 -6.1050 -8.8350 19 6 4.8821 -7.1859 -9.6523 20 1 5.8604 -7.5510 -9.3762 21 6 4.2364 -7.7089 -10.7526 22 7 3.0455 -7.2641 -11.0892 23 14 5.0540 -9.0483 -11.7661 24 1 6.3812 -9.3700 -11.1828 25 1 4.2021 -10.2647 -11.7579 26 1 5.2282 -8.5754 -13.1630 27 6 3.3057 -0.9085 -0.7921 28 1 -1.0500 -0.0003 -0.0009 29 1 2.7673 1.6173 1.4081 30 1 5.2254 1.6147 1.4069 31 1 6.4596 0.0053 0.0167 32 1 6.2372 -2.1842 -1.2621 33 1 5.9096 -4.0220 -3.1772 34 1 6.6769 -2.5947 -3.9138 35 1 5.8319 -1.6943 -5.9578 36 1 4.2919 -2.2896 -6.6235 37 1 4.3029 -1.3400 -5.1183 38 1 6.5713 -4.0001 -6.1246 39 1 5.8177 -5.2397 -5.0933 40 1 5.9650 -6.1572 -7.6225 41 1 3.2791 -6.4758 -8.4353 42 1 4.0339 -5.2368 -9.4664 43 1 2.5911 -7.6322 -11.8630 44 1 2.7696 -1.6151 -1.4083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052130941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:18 Heat of formation + Delta-G solvation = 28.437725 kcal Electronic energy + Delta-G solvation = -26078.520986 eV Core-core repulsion = 22191.067934 eV Total energy + Delta-G solvation = -3887.453052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.89820 -39.31900 -38.68176 -36.34459 -35.26586 -34.09807 -33.69142 -32.32246 -30.81912 -30.33346 -28.94049 -27.89001 -26.69003 -23.98231 -23.84550 -22.78268 -21.84277 -20.55618 -19.63879 -19.48717 -17.69057 -17.09513 -16.92405 -16.56894 -16.09796 -15.84186 -15.41081 -15.36124 -14.96975 -14.88378 -14.45864 -14.24604 -14.04096 -13.85171 -13.74082 -13.46825 -12.96524 -12.50563 -12.35608 -12.25714 -12.05844 -11.95328 -11.84424 -11.58287 -11.44389 -11.21395 -10.94344 -10.85538 -10.80205 -10.50853 -10.30914 -9.94464 -9.37042 -9.00194 -8.91341 -8.72818 -8.47717 -8.26397 -7.83842 -6.15969 -4.22971 0.58985 1.00699 2.29522 2.44271 2.62060 2.79680 3.23438 3.30302 3.33251 3.39953 3.68937 3.71446 3.98485 4.25835 4.40713 4.43667 4.58551 4.72821 4.84475 4.92636 4.95194 5.14344 5.19119 5.19995 5.26912 5.34079 5.38317 5.56494 5.65901 5.78134 5.79327 5.92054 5.98406 6.12699 6.20044 6.45059 6.65513 6.83371 6.94358 7.10856 7.29607 7.34290 7.47159 7.54122 7.68541 7.89068 7.98242 8.64989 8.80428 9.14852 9.43898 10.94268 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026004 B = 0.001811 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.481856 B =15453.689820 C =16248.761124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.151 4.151 3 C 0.027 3.973 4 C -0.114 4.114 5 C -0.101 4.101 6 C -0.139 4.139 7 C 0.151 3.849 8 N -0.680 5.680 9 C 0.512 3.488 10 O -0.488 6.488 11 C 0.038 3.962 12 N -0.505 5.505 13 C 0.014 3.986 14 C 0.036 3.964 15 C 0.498 3.502 16 O -0.533 6.533 17 N -0.715 5.715 18 C 0.251 3.749 19 C -0.543 4.543 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.097 4.097 28 H 0.225 0.775 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.411 0.589 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.014 0.986 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.100 0.900 40 H 0.389 0.611 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.838 14.348 26.054 31.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.151 4.151 3 C 0.027 3.973 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.159 4.159 7 C 0.056 3.944 8 N -0.327 5.327 9 C 0.299 3.701 10 O -0.359 6.359 11 C -0.093 4.093 12 N -0.229 5.229 13 C -0.133 4.133 14 C -0.095 4.095 15 C 0.282 3.718 16 O -0.410 6.410 17 N -0.365 5.365 18 C 0.130 3.870 19 C -0.581 4.581 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.731 3.269 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.117 4.117 28 H 0.242 0.758 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.146 0.854 32 H 0.247 0.753 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.032 0.968 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.118 0.882 40 H 0.221 0.779 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.651 14.790 25.547 30.259 hybrid contribution 1.918 -0.908 -0.617 2.210 sum 8.570 13.882 24.929 29.793 Atomic orbital electron populations 1.24916 0.95803 0.98971 0.99028 1.19959 0.92001 1.01603 1.01537 1.15812 0.86763 0.97000 0.97744 1.21174 0.94192 0.98723 0.99215 1.20834 0.93677 0.98448 0.98984 1.21010 1.00046 0.95460 0.99392 1.17568 0.90986 0.91935 0.93863 1.43555 1.26289 1.44923 1.17906 1.20852 0.87209 0.81045 0.80991 1.90744 1.20088 1.52339 1.72759 1.21970 0.94924 0.99888 0.92534 1.61284 1.48743 1.08958 1.03958 1.22742 0.99545 0.90684 1.00377 1.22056 0.95780 0.96100 0.95605 1.20198 0.87562 0.80938 0.83151 1.90662 1.22864 1.53687 1.73822 1.46435 1.22211 1.38186 1.29634 1.19088 0.89642 0.95372 0.82878 1.21265 1.04019 1.20964 1.11885 0.91865 1.24963 0.94858 0.97056 0.97223 1.69984 1.13278 1.42160 1.26776 0.86362 0.79333 0.81292 0.79904 1.19668 1.20804 1.20822 1.21417 0.92624 0.99433 0.98266 0.75823 0.85571 0.85107 0.85358 0.75286 0.87385 0.91517 0.96766 0.88710 0.89934 0.92197 0.88226 0.77874 0.95506 0.95614 0.92494 0.83589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.15 -1.75 13.24 -38.84 -0.51 -2.26 16 3 C 0.03 0.31 5.72 -107.03 -0.61 -0.30 16 4 C -0.11 -0.98 9.75 -39.17 -0.38 -1.36 16 5 C -0.10 -0.70 10.02 -39.67 -0.40 -1.09 16 6 C -0.14 -0.99 9.96 -39.32 -0.39 -1.38 16 7 C 0.15 1.44 6.29 -83.74 -0.53 0.91 16 8 N -0.68 -5.38 5.34 -9.90 -0.05 -5.43 16 9 C 0.51 5.74 7.40 -10.99 -0.08 5.65 16 10 O -0.49 -7.74 11.74 5.55 0.07 -7.68 16 11 C 0.04 0.36 5.45 -4.98 -0.03 0.34 16 12 N -0.51 -7.30 4.24 -245.83 -1.04 -8.34 16 13 C 0.01 0.21 8.85 60.06 0.53 0.74 16 14 C 0.04 0.49 5.45 -4.98 -0.03 0.46 16 15 C 0.50 9.89 7.52 -10.98 -0.08 9.80 16 16 O -0.53 -13.08 14.33 5.56 0.08 -13.00 16 17 N -0.72 -14.84 5.55 -61.47 -0.34 -15.19 16 18 C 0.25 6.67 5.43 -5.20 -0.03 6.64 16 19 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 20 H 0.06 1.59 7.60 -52.48 -0.40 1.20 16 21 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -26.23 13.29 55.43 0.74 -25.49 16 23 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C -0.10 -1.17 8.40 -39.00 -0.33 -1.49 16 28 H 0.23 1.25 7.80 -54.09 -0.42 0.83 16 29 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.41 1.62 8.82 -40.82 -0.36 1.26 16 33 H 0.11 0.73 7.93 -51.93 -0.41 0.32 16 34 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.09 1.78 5.82 -51.93 -0.30 1.48 16 37 H 0.08 1.34 5.88 -51.93 -0.31 1.03 16 38 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.10 1.09 7.93 -51.93 -0.41 0.68 16 40 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 41 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 44 H 0.15 2.09 6.22 -52.48 -0.33 1.77 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -37.34 382.28 -8.32 -45.66 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.79 Total: 5.67 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -2.71 Total: 2.21 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.70 Total: -54.44 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.14 Total: -20.67 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.34 -8.32 -45.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052130941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.102 kcal (2) G-P(sol) polarization free energy of solvation -37.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds