Wall clock time and date at job start Tue Mar 31 2020 05:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.42899 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00026 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46931 * 180.02562 * 10 9 8 12 12 C 1.38233 * 119.99988 * 269.72478 * 11 10 9 13 13 C 1.38237 * 120.00028 * 179.76536 * 12 11 10 14 14 C 1.38231 * 119.99644 * 0.51430 * 13 12 11 15 15 C 1.38231 * 120.00661 * 359.73825 * 14 13 12 16 16 C 1.38236 * 119.99418 * 0.02562 * 15 14 13 17 17 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 18 18 C 1.46491 * 126.04623 * 179.87688 * 17 4 3 19 19 C 1.50702 * 109.46957 * 269.71277 * 18 17 4 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48504 * 109.47196 * 60.00645 * 23 21 19 25 25 H 1.48504 * 109.46887 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47679 * 300.00280 * 23 21 19 27 27 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 29 29 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 30 30 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 31 31 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 32 32 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 33 33 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 34 34 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 35 35 H 1.09003 * 109.46929 * 300.00471 * 10 9 8 36 36 H 1.08993 * 109.47005 * 60.00415 * 10 9 8 37 37 H 1.07999 * 119.99598 * 0.02562 * 12 11 10 38 38 H 1.08000 * 119.99856 * 180.22649 * 13 12 11 39 39 H 1.08005 * 119.99596 * 179.72258 * 14 13 12 40 40 H 1.07992 * 120.00481 * 179.97438 * 15 14 13 41 41 H 1.08000 * 119.99491 * 179.97438 * 16 15 14 42 42 H 1.09004 * 109.47166 * 149.71543 * 18 17 4 43 43 H 1.08994 * 109.47507 * 29.71250 * 18 17 4 44 44 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 8 5.4372 5.1209 0.0292 10 6 6.5271 6.0452 0.0367 11 6 5.9911 7.4536 0.0397 12 6 5.7553 8.1059 -1.1561 13 6 5.2591 9.3961 -1.1535 14 6 5.0088 10.0378 0.0450 15 6 5.2495 9.3876 1.2408 16 6 5.7411 8.0956 1.2381 17 7 3.6093 -0.6405 0.0013 18 6 4.7870 -1.5116 0.0026 19 6 5.1921 -1.8109 -1.4178 20 1 4.6288 -1.3935 -2.2393 21 6 6.2856 -2.6124 -1.6685 22 7 6.9718 -3.1203 -0.6681 23 14 6.7923 -2.9770 -3.4290 24 1 7.1127 -1.7052 -4.1255 25 1 7.9891 -3.8562 -3.4277 26 1 5.6777 -3.6601 -4.1337 27 7 2.2731 -1.0608 0.0005 28 1 -0.3634 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.9901 2.1596 -0.0009 32 1 5.6359 1.1294 0.0155 33 1 6.4297 3.5415 0.9182 34 1 6.4372 3.5481 -0.8617 35 1 7.1329 5.8854 0.9287 36 1 7.1401 5.8912 -0.8512 37 1 5.9548 7.6059 -2.0923 38 1 5.0714 9.9044 -2.0877 39 1 4.6253 11.0475 0.0471 40 1 5.0543 9.8891 2.1771 41 1 5.9295 7.5876 2.1724 42 1 4.5494 -2.4431 0.5166 43 1 5.6079 -1.0120 0.5169 44 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058304631.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:03 Heat of formation + Delta-G solvation = 24.192358 kcal Electronic energy + Delta-G solvation = -26517.944403 eV Core-core repulsion = 22630.307259 eV Total energy + Delta-G solvation = -3887.637145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.85836 -39.70974 -39.17535 -37.45845 -34.72116 -33.76676 -32.34528 -32.07131 -31.15414 -29.58219 -28.87130 -27.43326 -26.05886 -25.79916 -22.91287 -22.84284 -21.65601 -21.52467 -19.75684 -19.32062 -17.39280 -17.09754 -16.79348 -16.69990 -16.54328 -16.02344 -15.50009 -15.36268 -14.95651 -14.61546 -14.46934 -14.04180 -13.86410 -13.63345 -13.38909 -12.98488 -12.85188 -12.77838 -12.50531 -12.42121 -12.18501 -11.99723 -11.76761 -11.57122 -11.29826 -11.23950 -11.10918 -10.89035 -10.39968 -10.34318 -9.96852 -9.88710 -9.84271 -9.46530 -9.16322 -9.09709 -8.73845 -7.92042 -7.44048 -6.35376 -4.43864 0.98444 1.15978 2.24547 2.53516 3.08442 3.16334 3.21239 3.25834 3.37512 3.60206 3.71006 4.04057 4.22855 4.52615 4.53547 4.68752 4.75397 4.86437 4.93161 4.95676 4.97899 5.06298 5.07667 5.26775 5.37230 5.38642 5.64665 5.69953 5.78093 6.04471 6.16573 6.18106 6.18929 6.24657 6.25392 6.32875 6.42302 6.64327 6.71945 6.80393 6.83558 7.03628 7.50995 7.56580 7.61977 7.78038 7.92042 8.29660 8.60811 8.70110 9.23668 10.71662 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.011983 B = 0.002577 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.000720 B =10864.275454 C =12444.303043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.051 3.949 3 C -0.295 4.295 4 C 0.303 3.697 5 N -0.639 5.639 6 C 0.519 3.481 7 O -0.493 6.493 8 C 0.050 3.950 9 O -0.355 6.355 10 C 0.100 3.900 11 C -0.089 4.089 12 C -0.096 4.096 13 C -0.125 4.125 14 C -0.115 4.115 15 C -0.125 4.125 16 C -0.096 4.096 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.540 4.540 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.907 3.093 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 N -0.285 5.285 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.161 0.839 32 H 0.416 0.584 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.277 21.778 2.875 22.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.327 4.327 4 C 0.080 3.920 5 N -0.288 5.288 6 C 0.304 3.696 7 O -0.365 6.365 8 C -0.030 4.030 9 O -0.273 6.273 10 C 0.024 3.976 11 C -0.089 4.089 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.133 4.133 15 C -0.143 4.143 16 C -0.114 4.114 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.199 1.199 27 N -0.110 5.110 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.142 0.858 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.655 20.767 2.927 20.983 hybrid contribution 1.335 0.146 -0.961 1.651 sum 1.989 20.913 1.966 21.099 Atomic orbital electron populations 1.20020 0.87565 1.02459 1.02051 1.22034 0.96533 0.91016 1.01812 1.21291 0.89095 1.00494 1.21788 1.17868 0.87853 0.83306 1.02928 1.42605 1.08433 1.05250 1.72502 1.20116 0.91098 0.81310 0.77112 1.90673 1.26451 1.73472 1.45861 1.22098 0.94515 0.83035 1.03400 1.88087 1.30879 1.12880 1.95493 1.21395 0.88761 0.86077 1.01359 1.19548 1.01356 0.94336 0.93689 1.21104 0.97877 0.94814 0.97635 1.21158 0.99731 0.95125 0.98240 1.21207 0.99474 0.99963 0.92655 1.21151 0.99821 0.95059 0.98251 1.21092 0.97922 0.94851 0.97582 1.49349 1.06555 1.02101 1.54994 1.19614 0.77824 0.89775 0.98895 1.21309 1.13104 1.32127 0.91354 0.91745 1.24938 0.95702 0.94876 0.98184 1.69910 1.19081 1.32711 1.31096 0.86406 0.78102 0.78505 0.83642 1.19984 1.20906 1.19850 1.77358 0.86100 1.21762 1.25792 0.91361 0.91114 0.91498 0.82138 0.74696 0.89612 0.89465 0.91992 0.91948 0.85804 0.85879 0.86044 0.85891 0.85834 0.92531 0.93824 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.95 10.44 36.00 0.38 -0.57 16 2 C 0.05 1.04 7.21 -82.44 -0.59 0.45 16 3 C -0.29 -6.20 9.58 -39.78 -0.38 -6.58 16 4 C 0.30 6.45 7.66 -153.16 -1.17 5.28 16 5 N -0.64 -11.08 5.41 -11.46 -0.06 -11.14 16 6 C 0.52 8.38 7.87 -10.98 -0.09 8.29 16 7 O -0.49 -9.71 13.63 -14.36 -0.20 -9.90 16 8 C 0.05 0.56 6.42 36.01 0.23 0.80 16 9 O -0.36 -4.62 9.86 -55.14 -0.54 -5.16 16 10 C 0.10 0.94 6.06 36.00 0.22 1.16 16 11 C -0.09 -0.91 5.51 -104.63 -0.58 -1.48 16 12 C -0.10 -0.93 9.70 -39.58 -0.38 -1.31 16 13 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 14 C -0.11 -0.94 10.05 -39.59 -0.40 -1.34 16 15 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 16 C -0.10 -0.91 9.70 -39.58 -0.38 -1.30 16 17 N -0.34 -8.11 3.60 -61.58 -0.22 -8.33 16 18 C 0.26 6.37 6.01 -5.20 -0.03 6.33 16 19 C -0.54 -14.40 9.39 -34.44 -0.32 -14.73 16 20 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -24.06 13.29 55.43 0.74 -23.33 16 23 Si 0.91 20.49 29.54 -169.99 -5.02 15.47 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 27 N -0.28 -6.70 12.56 33.65 0.42 -6.28 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.16 3.34 5.83 -52.49 -0.31 3.03 16 32 H 0.42 6.42 7.96 -40.82 -0.32 6.09 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 36 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 37 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 40 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.04 1.03 7.49 -51.93 -0.39 0.65 16 44 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.66 383.07 -9.57 -43.22 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.05 Total: 5.94 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -4.40 Total: -6.27 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.88 Total: -49.07 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.74 Total: -15.07 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.66 -9.57 -43.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058304631.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.417 kcal (2) G-P(sol) polarization free energy of solvation -33.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds