Wall clock time and date at job start Tue Mar 31 2020 05:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40347 * 120.48342 * 174.66752 * 3 2 1 5 5 C 1.36890 * 118.49134 * 179.74382 * 4 3 2 6 6 C 1.39362 * 119.38209 * 0.56436 * 5 4 3 7 7 N 1.38591 * 119.53505 * 179.70185 * 6 5 4 8 8 C 1.46955 * 111.00096 * 179.72911 * 7 6 5 9 9 C 1.53055 * 109.36220 * 183.18864 * 8 7 6 10 10 N 1.46965 * 109.36354 * 301.59453 * 9 8 7 11 11 C 1.46889 * 110.99870 * 183.18786 * 10 9 8 12 12 C 1.50706 * 109.47109 * 170.00198 * 11 10 9 13 13 O 1.21281 * 119.99699 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99801 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99967 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47280 * 89.99544 * 20 18 16 22 22 H 1.48504 * 109.46876 * 209.99818 * 20 18 16 23 23 H 1.48502 * 109.46730 * 329.99316 * 20 18 16 24 24 C 1.46959 * 110.87772 * 59.32159 * 10 9 8 25 25 C 1.46955 * 110.99786 * 303.52607 * 7 6 5 26 26 N 1.32567 * 120.93767 * 359.42179 * 6 5 4 27 27 C 1.31712 * 121.63701 * 0.27835 * 26 6 5 28 28 H 1.07998 * 120.75722 * 0.04982 * 4 3 2 29 29 H 1.07998 * 120.31455 * 180.25955 * 5 4 3 30 30 H 1.08990 * 109.49170 * 63.21969 * 8 7 6 31 31 H 1.08999 * 109.48583 * 303.15092 * 8 7 6 32 32 H 1.08995 * 109.48843 * 181.63413 * 9 8 7 33 33 H 1.08997 * 109.49354 * 61.56293 * 9 8 7 34 34 H 1.09004 * 109.47256 * 50.00565 * 11 10 9 35 35 H 1.08998 * 109.47820 * 290.00375 * 11 10 9 36 36 H 0.97005 * 120.00161 * 359.72088 * 14 12 11 37 37 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 38 38 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 39 39 H 0.97005 * 119.99977 * 180.02562 * 19 18 16 40 40 H 1.09007 * 109.48694 * 60.64644 * 24 10 9 41 41 H 1.09001 * 109.48949 * 180.71065 * 24 10 9 42 42 H 1.09002 * 109.49203 * 296.77990 * 25 7 6 43 43 H 1.09009 * 109.49103 * 56.82189 * 25 7 6 44 44 H 1.08004 * 119.74064 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2794 1.2052 -0.1124 5 6 4.6475 1.1589 -0.1026 6 6 5.2892 -0.0734 0.0057 7 7 6.6741 -0.1244 0.0097 8 6 7.1497 -1.5090 0.1380 9 6 8.6782 -1.5151 0.2184 10 7 9.2320 -0.8805 -0.9860 11 6 10.6999 -0.9346 -0.9818 12 6 11.2223 -0.5028 -2.3278 13 8 10.4480 -0.1822 -3.2044 14 7 12.5500 -0.4740 -2.5578 15 6 13.0579 -0.0537 -3.8661 16 6 14.5640 -0.1034 -3.8599 17 1 15.0904 -0.4162 -2.9702 18 6 15.2701 0.2507 -4.9900 19 7 16.5845 0.2078 -4.9844 20 14 14.3598 0.7925 -6.5286 21 1 14.1609 2.2637 -6.4939 22 1 15.1555 0.4286 -7.7285 23 1 13.0392 0.1156 -6.5865 24 6 8.7563 0.5040 -1.1143 25 6 7.2279 0.5101 -1.1946 26 7 4.5937 -1.1971 0.1106 27 6 3.2766 -1.1968 0.1113 28 1 2.7593 2.1477 -0.1996 29 1 5.2242 2.0685 -0.1831 30 1 6.8289 -2.0856 -0.7295 31 1 6.7362 -1.9530 1.0435 32 1 9.0347 -2.5429 0.2844 33 1 8.9982 -0.9614 1.1010 34 1 11.0254 -1.9543 -0.7758 35 1 11.0859 -0.2673 -0.2112 36 1 13.1695 -0.7273 -1.8556 37 1 12.6754 -0.7234 -4.6364 38 1 12.7287 0.9644 -4.0737 39 1 17.0813 0.4572 -5.7794 40 1 9.0772 1.0807 -0.2467 41 1 9.1698 0.9482 -2.0198 42 1 6.9079 -0.0436 -2.0773 43 1 6.8711 1.5380 -1.2610 44 1 2.7407 -2.1305 0.1980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060481162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:25 Heat of formation + Delta-G solvation = 61.501427 kcal Electronic energy + Delta-G solvation = -26560.804950 eV Core-core repulsion = 22707.078399 eV Total energy + Delta-G solvation = -3853.726551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.35034 -39.68568 -38.52574 -37.00469 -35.57059 -34.27410 -33.29700 -32.40740 -31.45144 -31.12921 -29.22180 -27.61033 -25.20009 -24.96370 -23.36348 -23.09269 -21.89809 -20.22492 -19.90895 -19.51779 -18.01330 -17.42208 -17.13586 -16.08721 -15.97688 -15.65472 -15.34531 -15.11358 -14.89182 -14.64763 -14.60465 -14.44011 -14.17788 -14.00937 -13.81360 -13.63525 -13.33314 -13.19409 -12.86999 -12.65767 -12.56395 -12.39984 -12.11093 -11.81250 -11.50660 -11.29249 -11.19921 -11.01900 -10.77841 -10.51589 -10.34836 -10.05448 -10.00079 -9.53345 -9.23332 -8.81110 -8.59406 -8.40447 -8.16397 -6.24732 -4.27253 0.11689 0.72784 2.21637 2.45296 3.01480 3.17357 3.24123 3.30653 3.38999 3.39307 3.44861 3.47396 3.87677 4.13482 4.21624 4.30341 4.40630 4.55913 4.62210 4.82982 4.93054 5.02848 5.10228 5.11590 5.16126 5.18682 5.30717 5.33561 5.36040 5.43741 5.46695 5.59192 5.64772 5.73678 5.85025 5.91651 6.22686 6.59309 6.72676 6.84851 6.92277 7.02690 7.03627 7.19168 7.35777 7.39337 8.10301 8.47666 8.71970 8.90072 9.35318 10.87165 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.001947 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.662857 B =14381.230980 C =15015.782391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.263 3.737 3 C -0.124 4.124 4 C -0.003 4.003 5 C -0.188 4.188 6 C 0.350 3.650 7 N -0.479 5.479 8 C 0.070 3.930 9 C 0.052 3.948 10 N -0.522 5.522 11 C 0.037 3.963 12 C 0.501 3.499 13 O -0.543 6.543 14 N -0.707 5.707 15 C 0.222 3.778 16 C -0.545 4.545 17 H 0.079 0.921 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.260 1.260 24 C 0.051 3.949 25 C 0.066 3.934 26 N -0.519 5.519 27 C 0.188 3.812 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.025 0.975 38 H 0.020 0.980 39 H 0.268 0.732 40 H 0.040 0.960 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.429 -0.425 14.061 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.053 4.053 3 C -0.131 4.131 4 C -0.031 4.031 5 C -0.211 4.211 6 C 0.116 3.884 7 N -0.195 5.195 8 C -0.057 4.057 9 C -0.077 4.077 10 N -0.247 5.247 11 C -0.094 4.094 12 C 0.285 3.715 13 O -0.421 6.421 14 N -0.356 5.356 15 C 0.100 3.900 16 C -0.583 4.583 17 H 0.097 0.903 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.185 1.185 24 C -0.077 4.077 25 C -0.060 4.060 26 N -0.233 5.233 27 C 0.026 3.974 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.121 0.879 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.043 0.957 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.129 0.871 42 H 0.082 0.918 43 H 0.108 0.892 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.963 -0.942 13.346 27.445 hybrid contribution 0.155 1.022 -0.308 1.079 sum -23.807 0.080 13.037 27.143 Atomic orbital electron populations 1.81290 1.11930 1.06929 1.09428 1.25381 0.92237 0.94118 0.93533 1.16874 0.85542 0.96277 1.14401 1.21194 0.93560 0.97323 0.91012 1.21288 0.94526 0.98438 1.06865 1.20154 0.89937 0.89234 0.89047 1.59106 1.02748 1.20409 1.37199 1.22119 0.93908 0.86173 1.03496 1.22301 0.93959 1.00259 0.91138 1.61800 1.06895 1.18105 1.37897 1.21981 0.88307 1.03155 0.95993 1.20343 0.83037 0.78792 0.89320 1.90612 1.56293 1.49021 1.46208 1.46183 1.05671 1.66508 1.17226 1.19469 0.94967 0.94975 0.80572 1.21098 0.88566 1.47601 1.01025 0.90263 1.24800 0.94760 0.94412 0.98642 1.69880 1.05804 1.47449 1.29776 0.86815 0.80551 0.79720 0.82586 1.19877 1.20902 1.18480 1.22399 0.93027 0.89107 1.03195 1.22410 0.95377 0.99639 0.88527 1.67837 1.08085 1.29064 1.18280 1.22752 0.88813 0.96627 0.89237 0.83715 0.83424 0.91601 0.88972 0.89428 0.93843 0.87918 0.91974 0.77063 0.95690 0.96244 0.92244 0.94152 0.87089 0.91782 0.89182 0.81631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -4.40 18.54 41.84 0.78 -3.63 16 2 C 0.26 2.09 15.37 -22.47 -0.35 1.75 16 3 C -0.12 -0.78 5.75 -106.68 -0.61 -1.40 16 4 C 0.00 -0.02 9.85 -39.28 -0.39 -0.40 16 5 C -0.19 -1.17 9.14 -39.65 -0.36 -1.53 16 6 C 0.35 2.89 6.39 -155.19 -0.99 1.90 16 7 N -0.48 -4.26 4.72 -173.05 -0.82 -5.08 16 8 C 0.07 0.62 4.78 -3.77 -0.02 0.61 16 9 C 0.05 0.47 5.61 -3.76 -0.02 0.45 16 10 N -0.52 -6.19 4.45 -235.90 -1.05 -7.24 16 11 C 0.04 0.45 5.45 -4.98 -0.03 0.42 16 12 C 0.50 8.67 7.53 -10.98 -0.08 8.59 16 13 O -0.54 -11.29 14.34 5.56 0.08 -11.21 16 14 N -0.71 -13.34 5.55 -61.47 -0.34 -13.68 16 15 C 0.22 5.25 4.50 -5.19 -0.02 5.23 16 16 C -0.55 -14.54 9.83 -34.44 -0.34 -14.87 16 17 H 0.08 2.20 7.84 -52.49 -0.41 1.78 16 18 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 19 N -0.89 -26.01 13.96 55.43 0.77 -25.23 16 20 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 24 C 0.05 0.58 5.26 -3.77 -0.02 0.56 16 25 C 0.07 0.61 5.36 -3.77 -0.02 0.59 16 26 N -0.52 -4.35 8.66 -12.11 -0.10 -4.45 16 27 C 0.19 1.22 10.92 -17.10 -0.19 1.04 16 28 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.15 0.68 7.17 -52.49 -0.38 0.31 16 30 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 31 H 0.09 0.77 7.81 -51.93 -0.41 0.36 16 32 H 0.09 0.69 8.07 -51.93 -0.42 0.27 16 33 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 1.05 8.03 -51.93 -0.42 0.64 16 35 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 36 H 0.40 6.51 8.32 -40.82 -0.34 6.17 16 37 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 38 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.04 0.43 8.14 -51.92 -0.42 0.00 16 41 H 0.11 1.57 5.85 -51.93 -0.30 1.26 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.09 0.65 6.77 -51.92 -0.35 0.30 16 44 H 0.17 0.71 8.06 -52.48 -0.42 0.28 16 LS Contribution 369.28 15.07 5.56 5.56 Total: -1.00 -33.12 369.28 -9.23 -42.36 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.91 Total: 1.31 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -3.54 Total: 4.97 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: -0.76 Total: -59.31 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.08 Total: -11.21 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.12 -9.23 -42.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060481162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.860 kcal (2) G-P(sol) polarization free energy of solvation -33.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds