Wall clock time and date at job start Tue Mar 31 2020 05:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47291 * 2 1 4 4 C 1.35908 * 117.00328 * 179.97438 * 3 2 1 5 5 C 1.38857 * 119.98164 * 0.02562 * 4 3 2 6 6 C 1.38251 * 120.24238 * 179.97438 * 5 4 3 7 7 C 1.38005 * 120.20606 * 359.70192 * 6 5 4 8 8 C 1.39577 * 119.96382 * 0.55089 * 7 6 5 9 9 C 1.47820 * 120.11975 * 179.74801 * 8 7 6 10 10 O 1.21573 * 120.00094 * 179.72380 * 9 8 7 11 11 N 1.34777 * 119.99970 * 359.72659 * 9 8 7 12 12 C 1.39379 * 120.00046 * 180.27888 * 11 9 8 13 13 C 1.36153 * 126.25978 * 359.40740 * 12 11 9 14 14 C 1.39734 * 107.85694 * 179.88546 * 13 12 11 15 15 C 1.50699 * 125.77886 * 180.11614 * 14 13 12 16 16 N 1.30835 * 108.44107 * 0.38656 * 14 13 12 17 17 N 1.35803 * 126.26370 * 179.72288 * 12 11 9 18 18 C 1.46494 * 126.09578 * 359.97438 * 17 12 11 19 19 C 1.50701 * 109.47677 * 89.99843 * 18 17 12 20 20 H 1.07998 * 119.99414 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00375 * 180.02562 * 19 18 17 22 22 N 1.31513 * 119.99770 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99815 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46894 * 90.00617 * 23 21 19 25 25 H 1.48503 * 109.46890 * 210.00113 * 23 21 19 26 26 H 1.48498 * 109.47264 * 330.00187 * 23 21 19 27 27 C 1.38443 * 119.98601 * 180.02562 * 4 3 2 28 28 H 1.09001 * 109.47134 * 60.00016 * 1 2 3 29 29 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47104 * 299.99480 * 1 2 3 31 31 H 1.09003 * 109.47340 * 240.00141 * 2 1 3 32 32 H 1.09001 * 109.47134 * 119.99984 * 2 1 3 33 33 H 1.08001 * 119.88085 * 359.97438 * 5 4 3 34 34 H 1.07993 * 119.89730 * 179.97438 * 6 5 4 35 35 H 1.08001 * 120.01871 * 180.28208 * 7 6 5 36 36 H 0.97001 * 119.99727 * 359.97438 * 11 9 8 37 37 H 1.07993 * 126.07263 * 0.02562 * 13 12 11 38 38 H 1.09001 * 109.46891 * 270.29272 * 15 14 13 39 39 H 1.08993 * 109.46929 * 30.29508 * 15 14 13 40 40 H 1.09001 * 109.46925 * 150.29637 * 15 14 13 41 41 H 1.09004 * 109.47382 * 210.00428 * 18 17 12 42 42 H 1.09004 * 109.46887 * 329.99435 * 18 17 12 43 43 H 0.97004 * 119.99725 * 180.02562 * 22 21 19 44 44 H 1.08006 * 120.10637 * 0.05035 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.1993 0.4239 0.0005 6 6 5.5707 0.5988 0.0005 7 6 6.1085 1.8698 -0.0056 8 6 5.2666 2.9830 -0.0003 9 6 5.8390 4.3459 -0.0012 10 8 5.1037 5.3141 -0.0017 11 7 7.1761 4.5152 -0.0017 12 6 7.7158 5.8003 0.0032 13 6 7.0155 6.9679 -0.0025 14 6 7.9356 8.0195 0.0083 15 6 7.5957 9.4876 0.0091 16 7 9.1422 7.5136 0.0118 17 7 9.0364 6.1168 0.0087 18 6 10.1516 5.1669 0.0110 19 6 10.5393 4.8438 -1.4090 20 1 10.0083 5.3008 -2.2310 21 6 11.5719 3.9649 -1.6588 22 7 12.2181 3.4081 -0.6579 23 14 12.0518 3.5639 -3.4190 24 1 13.0873 4.5231 -3.8804 25 1 12.5935 2.1827 -3.4819 26 1 10.8564 3.6672 -4.2939 27 6 3.8825 2.8048 0.0011 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.7841 -0.5731 0.0005 34 1 6.2231 -0.2617 0.0009 35 1 7.1802 2.0029 -0.0102 36 1 7.7627 3.7428 -0.0011 37 1 5.9399 7.0642 -0.0114 38 1 7.5177 9.8430 -1.0183 39 1 6.6448 9.6401 0.5195 40 1 8.3789 10.0416 0.5268 41 1 11.0035 5.6078 0.5289 42 1 9.8492 4.2528 0.5220 43 1 12.9447 2.7900 -0.8336 44 1 3.2260 3.6624 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065606953.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:00 Heat of formation + Delta-G solvation = 27.471938 kcal Electronic energy + Delta-G solvation = -27035.994956 eV Core-core repulsion = 23148.500024 eV Total energy + Delta-G solvation = -3887.494931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.98302 -40.34083 -39.17738 -37.33455 -34.80628 -33.78477 -32.36260 -32.06407 -31.42804 -29.85751 -29.07782 -28.09522 -26.02710 -24.94340 -23.34493 -22.71803 -22.62914 -21.03674 -19.82256 -19.52730 -18.26937 -16.97168 -16.69067 -16.51872 -16.43763 -16.20510 -15.48168 -15.18267 -15.11672 -14.52312 -14.11741 -14.02254 -13.89960 -13.62955 -13.58571 -12.97153 -12.86702 -12.76626 -12.50115 -12.33296 -12.26659 -12.01328 -11.91323 -11.76400 -11.57128 -11.16137 -11.10243 -11.06339 -10.89844 -10.40335 -10.34250 -9.96573 -9.81598 -9.53789 -9.25175 -8.72898 -8.48650 -7.90075 -7.43488 -6.34216 -4.42624 0.61596 1.20672 2.41637 2.63678 2.99590 3.09707 3.16404 3.23307 3.28115 3.53164 3.78948 3.81706 4.23938 4.45345 4.49581 4.53489 4.70857 4.76392 4.86969 4.94690 4.99152 5.05858 5.23719 5.32659 5.37080 5.39899 5.64378 5.64889 5.72390 5.99050 6.05783 6.10912 6.15328 6.16633 6.19381 6.25987 6.41848 6.42308 6.68637 6.83446 7.04207 7.12686 7.51532 7.57496 7.62282 7.79083 7.90132 8.27479 8.61544 8.70891 9.25049 10.72831 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.003280 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.109730 B = 8534.383025 C =10697.776678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.053 3.947 3 O -0.314 6.314 4 C 0.120 3.880 5 C -0.185 4.185 6 C -0.084 4.084 7 C -0.120 4.120 8 C -0.087 4.087 9 C 0.565 3.435 10 O -0.508 6.508 11 N -0.632 5.632 12 C 0.300 3.700 13 C -0.291 4.291 14 C 0.050 3.950 15 C -0.062 4.062 16 N -0.283 5.283 17 N -0.346 5.346 18 C 0.257 3.743 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.416 0.584 37 H 0.162 0.838 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.269 0.731 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.566 -8.566 2.756 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.228 6.228 4 C 0.075 3.925 5 C -0.204 4.204 6 C -0.102 4.102 7 C -0.139 4.139 8 C -0.091 4.091 9 C 0.352 3.648 10 O -0.383 6.383 11 N -0.279 5.279 12 C 0.078 3.922 13 C -0.323 4.323 14 C -0.115 4.115 15 C -0.121 4.121 16 N -0.108 5.108 17 N -0.132 5.132 18 C 0.139 3.861 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.196 1.196 27 C -0.109 4.109 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.254 0.746 37 H 0.180 0.820 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -17.748 -7.759 2.814 19.573 hybrid contribution 0.178 -1.419 -0.988 1.738 sum -17.570 -9.178 1.826 19.907 Atomic orbital electron populations 1.21779 0.92640 1.02856 1.03699 1.22808 0.96008 0.81911 1.01444 1.86095 1.18626 1.29327 1.88747 1.18757 0.82579 0.93652 0.97515 1.21445 0.94438 0.98157 1.06332 1.20906 0.94298 0.97270 0.97699 1.21375 1.00124 0.92006 1.00370 1.19489 0.93361 0.92283 1.03950 1.18027 0.81033 0.88913 0.76819 1.90713 1.59131 1.40675 1.47790 1.42597 1.07313 1.06533 1.71467 1.17993 0.85722 0.85448 1.03056 1.21283 1.00972 0.88581 1.21460 1.22021 0.90881 0.96648 1.01945 1.20021 1.01430 0.88465 1.02166 1.77332 1.20883 0.87054 1.25512 1.49496 1.03644 1.04833 1.55215 1.19621 0.82660 0.84909 0.98916 1.21354 1.18134 1.26999 0.91368 0.91675 1.24931 0.95335 0.95233 0.98164 1.69919 1.22250 1.29612 1.31003 0.86361 0.79055 0.77698 0.83657 1.20194 1.20841 1.19641 1.20413 0.93753 0.95646 1.01118 0.91412 0.90358 0.91417 0.91934 0.91943 0.85095 0.84770 0.84828 0.74599 0.82043 0.91304 0.91123 0.91552 0.92484 0.93885 0.92169 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.37 5.46 37.16 0.20 0.57 16 3 O -0.31 -3.36 10.13 -19.45 -0.20 -3.55 16 4 C 0.12 1.38 6.68 -39.28 -0.26 1.12 16 5 C -0.18 -1.79 9.03 -39.35 -0.36 -2.15 16 6 C -0.08 -0.84 10.03 -39.66 -0.40 -1.24 16 7 C -0.12 -1.45 9.54 -39.17 -0.37 -1.83 16 8 C -0.09 -1.23 5.87 -104.99 -0.62 -1.85 16 9 C 0.56 9.68 7.74 -12.34 -0.10 9.58 16 10 O -0.51 -9.76 13.47 5.30 0.07 -9.69 16 11 N -0.63 -11.57 5.36 -12.21 -0.07 -11.64 16 12 C 0.30 6.48 7.68 -152.75 -1.17 5.31 16 13 C -0.29 -6.11 9.58 -39.77 -0.38 -6.49 16 14 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 15 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 16 N -0.28 -6.66 12.56 33.64 0.42 -6.23 16 17 N -0.35 -8.22 3.62 -61.45 -0.22 -8.44 16 18 C 0.26 6.43 6.02 -5.20 -0.03 6.40 16 19 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 20 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 23 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C -0.09 -1.19 9.53 -39.02 -0.37 -1.56 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 32 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 33 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 34 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 35 H 0.13 1.54 6.40 -52.49 -0.34 1.20 16 36 H 0.42 7.00 6.02 -40.82 -0.25 6.75 16 37 H 0.16 3.29 5.83 -52.49 -0.31 2.99 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 1.54 8.14 -51.93 -0.42 1.11 16 42 H 0.04 1.04 7.52 -51.93 -0.39 0.65 16 43 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 44 H 0.15 1.97 7.65 -52.48 -0.40 1.57 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.03 375.41 -8.46 -40.49 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -5.73 Total: 7.08 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -4.11 Total: -5.86 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.87 Total: -49.74 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -0.13 Total: -13.25 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.03 -8.46 -40.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065606953.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.963 kcal (2) G-P(sol) polarization free energy of solvation -32.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds