Wall clock time and date at job start Tue Mar 31 2020 05:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21314 * 120.00113 * 2 1 4 4 C 1.46657 * 120.00019 * 179.97438 * 2 1 3 5 5 C 1.40067 * 120.23560 * 354.19973 * 4 2 1 6 6 C 1.37626 * 119.89223 * 180.02562 * 5 4 2 7 7 C 1.38696 * 120.39967 * 359.97438 * 6 5 4 8 8 C 1.37942 * 120.49168 * 0.02606 * 7 6 5 9 9 C 1.38959 * 120.08491 * 359.97438 * 8 7 6 10 10 N 1.38704 * 120.19361 * 179.97438 * 9 8 7 11 11 C 1.46497 * 119.99775 * 5.44180 * 10 9 8 12 12 C 1.50701 * 109.46600 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99753 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00134 * 179.97438 * 14 12 11 16 16 C 1.50698 * 109.46789 * 90.00358 * 15 14 12 17 17 H 1.08004 * 120.00528 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00010 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99887 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99783 * 0.02562 * 18 16 15 21 21 H 1.48509 * 109.47097 * 90.00120 * 20 18 16 22 22 H 1.48495 * 109.47400 * 209.99778 * 20 18 16 23 23 H 1.48499 * 109.47404 * 330.00177 * 20 18 16 24 24 C 1.46507 * 120.00325 * 0.02562 * 14 12 11 25 25 C 1.52995 * 109.47188 * 89.99120 * 24 14 12 26 26 C 1.47205 * 109.47214 * 180.02562 * 25 24 14 27 27 N 9.37169 * 158.99060 * 233.87396 * 2 1 3 28 28 H 1.08998 * 109.47019 * 270.00798 * 1 2 3 29 29 H 1.09005 * 109.46863 * 30.00250 * 1 2 3 30 30 H 1.08998 * 109.47328 * 150.00176 * 1 2 3 31 31 H 1.07997 * 120.05284 * 359.97438 * 5 4 2 32 32 H 1.07997 * 119.79987 * 179.97438 * 6 5 4 33 33 H 1.07996 * 119.75607 * 180.02562 * 7 6 5 34 34 H 1.07990 * 119.95520 * 179.71943 * 8 7 6 35 35 H 0.96997 * 119.99584 * 185.44787 * 10 9 8 36 36 H 1.08998 * 109.47265 * 299.99521 * 11 10 9 37 37 H 1.08994 * 109.47127 * 60.00585 * 11 10 9 38 38 H 1.08997 * 109.47003 * 210.00068 * 15 14 12 39 39 H 1.08992 * 109.47064 * 330.00694 * 15 14 12 40 40 H 0.97003 * 119.99525 * 180.02562 * 19 18 16 41 41 H 1.08999 * 109.47240 * 210.00012 * 24 14 12 42 42 H 1.09007 * 109.46529 * 329.99674 * 24 14 12 43 43 H 1.08999 * 109.47758 * 300.00575 * 25 24 14 44 44 H 1.09007 * 109.46933 * 60.00801 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2701 0.0006 5 6 1.5503 -2.4828 0.1234 6 6 2.2456 -3.6705 0.1236 7 6 3.6272 -3.6750 0.0023 8 6 4.3230 -2.4902 -0.1196 9 6 3.6414 -1.2792 -0.1222 10 7 4.3388 -0.0865 -0.2441 11 6 5.7829 -0.1042 -0.4901 12 6 6.2942 1.3104 -0.5815 13 8 5.5279 2.2417 -0.4534 14 7 7.6032 1.5407 -0.8047 15 6 8.1003 2.9160 -0.8941 16 6 8.5087 3.3926 0.4759 17 1 8.4085 2.7366 1.3281 18 6 9.0103 4.6661 0.6417 19 7 9.3671 5.0819 1.8373 20 14 9.1830 5.8010 -0.8319 21 1 7.9326 6.5837 -1.0031 22 1 10.3214 6.7287 -0.6116 23 1 9.4321 4.9929 -2.0526 24 6 8.5291 0.4158 -0.9589 25 6 8.6095 0.0201 -2.4346 26 6 9.5393 -1.1106 -2.5895 27 7 10.2557 -1.9809 -2.7139 28 1 -0.3633 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 0.4745 -2.4858 0.2186 32 1 1.7121 -4.6047 0.2189 33 1 4.1623 -4.6131 0.0033 34 1 5.3991 -2.5035 -0.2090 35 1 3.8704 0.7593 -0.1665 36 1 6.2846 -0.6200 0.3287 37 1 5.9857 -0.6246 -1.4260 38 1 8.9613 2.9484 -1.5617 39 1 7.3137 3.5619 -1.2840 40 1 9.7197 5.9780 1.9539 41 1 9.5182 0.7084 -0.6067 42 1 8.1713 -0.4319 -0.3744 43 1 7.6203 -0.2725 -2.7869 44 1 8.9673 0.8678 -3.0191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075572112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:03 Heat of formation + Delta-G solvation = -4.966182 kcal Electronic energy + Delta-G solvation = -27365.424557 eV Core-core repulsion = 23476.523003 eV Total energy + Delta-G solvation = -3888.901554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49034 -39.49438 -38.16775 -37.05926 -35.75131 -35.19620 -32.86028 -32.09979 -31.12733 -30.25363 -29.53427 -28.28937 -26.24561 -24.16763 -23.92860 -22.58588 -21.39672 -20.25016 -18.70593 -17.89999 -17.60392 -17.01916 -16.86691 -16.32127 -16.03649 -15.48293 -15.44968 -15.02255 -14.80222 -14.58142 -14.41264 -14.27789 -14.00993 -13.83344 -13.61503 -13.30079 -12.95320 -12.61878 -12.59053 -12.51263 -12.37609 -12.30219 -12.19211 -12.06186 -11.88664 -11.66613 -11.36329 -11.15001 -10.99871 -10.60945 -10.31238 -10.25085 -9.66798 -9.62296 -9.32486 -9.13567 -8.65860 -8.04663 -7.54925 -6.15322 -4.15661 0.66497 1.48539 2.37770 2.61543 2.71681 3.00221 3.13257 3.24641 3.29695 3.33392 3.62728 3.75684 4.02545 4.05994 4.33004 4.62948 4.70483 4.82075 4.86213 4.93206 4.95417 5.11444 5.12314 5.17333 5.20371 5.24574 5.28277 5.33252 5.39294 5.47335 5.64616 5.71284 5.81718 5.92695 6.07177 6.19772 6.39108 6.46910 6.64034 6.78779 7.05230 7.20259 7.43534 7.46535 7.50415 7.88596 8.06734 8.35747 8.64080 8.87813 9.43475 10.97830 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010631 B = 0.003536 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.204924 B = 7916.149148 C = 9935.700555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.394 3.606 3 O -0.463 6.463 4 C -0.265 4.265 5 C -0.022 4.022 6 C -0.205 4.205 7 C -0.035 4.035 8 C -0.220 4.220 9 C 0.283 3.717 10 N -0.707 5.707 11 C 0.090 3.910 12 C 0.503 3.497 13 O -0.517 6.517 14 N -0.588 5.588 15 C 0.215 3.785 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.265 1.265 24 C 0.114 3.886 25 C -0.052 4.052 26 C 0.215 3.785 27 N -0.440 5.440 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.128 0.872 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.429 0.571 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.041 0.959 40 H 0.266 0.734 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.795 -17.576 -6.890 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.276 3.724 3 O -0.340 6.340 4 C -0.271 4.271 5 C -0.040 4.040 6 C -0.225 4.225 7 C -0.054 4.054 8 C -0.243 4.243 9 C 0.170 3.830 10 N -0.345 5.345 11 C -0.038 4.038 12 C 0.289 3.711 13 O -0.392 6.392 14 N -0.319 5.319 15 C 0.095 3.905 16 C -0.573 4.573 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.012 4.012 25 C -0.093 4.093 26 C -0.103 4.103 27 N -0.117 5.117 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.282 0.718 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.547 -17.507 -6.939 22.630 hybrid contribution -0.130 1.108 -0.489 1.219 sum -12.678 -16.399 -7.428 22.019 Atomic orbital electron populations 1.22169 0.93914 1.04652 1.04543 1.22289 0.91744 0.87420 0.70989 1.90342 1.70645 1.34505 1.38495 1.19859 0.92029 0.95400 1.19857 1.21161 0.99355 0.90933 0.92572 1.20787 0.94332 0.97794 1.09609 1.21105 0.94272 0.97353 0.92653 1.20740 1.00073 0.91071 1.12386 1.18046 0.89943 0.86781 0.88230 1.45514 1.06774 1.08508 1.73744 1.21354 0.83264 0.96643 1.02576 1.20168 0.82883 0.90215 0.77871 1.90744 1.55221 1.44720 1.48554 1.47827 1.05899 1.08221 1.69976 1.19771 0.94785 0.77466 0.98470 1.21283 1.42805 1.00076 0.93109 0.90619 1.24855 0.94673 0.97586 0.95776 1.69891 1.42906 1.18674 1.21716 0.86867 0.78272 0.81405 0.83219 1.19857 1.21055 1.18972 1.21399 0.97230 0.90151 0.92443 1.19893 0.96407 0.92005 1.01033 1.28923 0.93906 0.94119 0.93331 1.81146 1.10362 1.11704 1.08457 0.88682 0.89545 0.89720 0.85370 0.86068 0.85877 0.85519 0.71849 0.89040 0.89362 0.94712 0.94150 0.92446 0.88098 0.90216 0.87502 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 9.63 36.01 0.35 -1.20 16 2 C 0.39 4.96 7.20 -30.91 -0.22 4.73 16 3 O -0.46 -7.91 14.40 5.53 0.08 -7.83 16 4 C -0.27 -3.14 5.88 -104.90 -0.62 -3.76 16 5 C -0.02 -0.19 9.31 -39.12 -0.36 -0.55 16 6 C -0.20 -1.67 10.02 -39.64 -0.40 -2.07 16 7 C -0.03 -0.30 10.03 -39.52 -0.40 -0.70 16 8 C -0.22 -2.31 9.30 -39.42 -0.37 -2.68 16 9 C 0.28 3.67 6.66 -83.57 -0.56 3.12 16 10 N -0.71 -10.77 5.55 -59.58 -0.33 -11.10 16 11 C 0.09 1.19 3.97 -5.19 -0.02 1.17 16 12 C 0.50 9.10 7.74 -10.99 -0.09 9.01 16 13 O -0.52 -12.00 15.25 5.56 0.08 -11.91 16 14 N -0.59 -10.14 2.46 -175.06 -0.43 -10.57 16 15 C 0.22 4.68 4.23 -5.19 -0.02 4.66 16 16 C -0.53 -14.42 9.94 -34.44 -0.34 -14.76 16 17 H 0.08 2.26 8.06 -52.48 -0.42 1.83 16 18 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 19 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 20 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 21 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 24 C 0.11 1.38 5.17 -4.04 -0.02 1.36 16 25 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 26 C 0.22 2.35 15.43 -20.82 -0.32 2.03 16 27 N -0.44 -6.01 18.52 42.08 0.78 -5.23 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.45 6.71 -51.93 -0.35 0.10 16 31 H 0.13 0.73 6.52 -52.49 -0.34 0.39 16 32 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 33 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.13 1.13 6.72 -52.49 -0.35 0.78 16 35 H 0.43 7.85 3.96 -40.94 -0.16 7.69 16 36 H 0.09 1.06 6.99 -51.93 -0.36 0.70 16 37 H 0.09 0.87 7.17 -51.93 -0.37 0.50 16 38 H 0.04 0.69 7.13 -51.93 -0.37 0.32 16 39 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 42 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 43 H 0.11 0.75 7.22 -51.93 -0.38 0.38 16 44 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -36.49 375.04 -7.22 -43.71 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -5.50 Total: 5.69 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -3.66 Total: 1.70 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.79 Total: -52.96 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.16 Total: -19.74 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.49 -7.22 -43.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075572112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.739 kcal (2) G-P(sol) polarization free energy of solvation -36.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds