Wall clock time and date at job start Tue Mar 31 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35924 * 117.00236 * 2 1 4 4 C 1.38756 * 119.99049 * 180.02562 * 3 2 1 5 5 C 1.38043 * 120.01189 * 180.23464 * 4 3 2 6 6 C 1.38861 * 119.99037 * 359.48912 * 5 4 3 7 7 N 1.40177 * 120.01657 * 180.25897 * 6 5 4 8 8 C 1.35841 * 124.95713 * 0.25282 * 7 6 5 9 9 C 1.35365 * 107.13138 * 179.97438 * 8 7 6 10 10 C 1.41523 * 105.56241 * 359.97438 * 9 8 7 11 11 C 1.47646 * 126.45050 * 180.02562 * 10 9 8 12 12 O 1.21578 * 119.99544 * 353.46386 * 11 10 9 13 13 N 1.34775 * 120.00065 * 173.45771 * 11 10 9 14 14 C 1.46500 * 120.00079 * 3.45689 * 13 11 10 15 15 C 1.46495 * 120.00100 * 183.44936 * 13 11 10 16 16 H 1.09003 * 109.47058 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.46886 * 120.00480 * 15 13 11 18 18 C 1.50701 * 109.47590 * 240.00549 * 15 13 11 19 19 H 1.08000 * 119.99582 * 0.02562 * 18 15 13 20 20 C 1.37879 * 120.00129 * 179.97438 * 18 15 13 21 21 N 1.31515 * 119.99838 * 180.02562 * 20 18 15 22 22 Si 1.86803 * 119.99985 * 0.02562 * 20 18 15 23 23 H 1.48495 * 109.47092 * 89.99766 * 22 20 18 24 24 H 1.48492 * 109.46835 * 209.99981 * 22 20 18 25 25 H 1.48501 * 109.46709 * 329.99877 * 22 20 18 26 26 N 1.28482 * 124.96201 * 179.97438 * 7 6 5 27 27 C 1.38873 * 119.97166 * 0.50977 * 6 5 4 28 28 C 1.38046 * 119.98637 * 359.74461 * 27 6 5 29 29 H 1.09006 * 109.46832 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47119 * 299.99679 * 1 2 3 31 31 H 1.08995 * 109.47329 * 60.00062 * 1 2 3 32 32 H 1.07999 * 119.98890 * 359.95219 * 4 3 2 33 33 H 1.08006 * 120.00375 * 179.74330 * 5 4 3 34 34 H 1.07993 * 126.43559 * 359.95987 * 8 7 6 35 35 H 1.07998 * 127.22323 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47171 * 84.07725 * 14 13 11 37 37 H 1.08995 * 109.47555 * 204.08016 * 14 13 11 38 38 H 1.09004 * 109.46919 * 324.08114 * 14 13 11 39 39 H 1.09010 * 109.47340 * 180.02562 * 17 15 13 40 40 H 1.09006 * 109.47345 * 299.99705 * 17 15 13 41 41 H 1.08993 * 109.47558 * 60.00167 * 17 15 13 42 42 H 0.96997 * 119.99888 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.00721 * 179.77307 * 27 6 5 44 44 H 1.07997 * 119.99521 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2111 0.0000 4 6 3.4318 1.2834 -0.0005 5 6 4.0591 2.5131 0.0044 6 6 3.3031 3.6779 -0.0009 7 7 3.9395 4.9269 -0.0014 8 6 5.2848 5.1149 -0.0020 9 6 5.5006 6.4513 -0.0029 10 6 4.2152 7.0435 -0.0035 11 6 3.9154 8.4892 -0.0051 12 8 4.8163 9.2968 0.1137 13 7 2.6432 8.9134 -0.1385 14 6 1.5498 7.9406 -0.2057 15 6 2.3535 10.3474 -0.2161 16 1 3.2846 10.9102 -0.1498 17 6 1.6644 10.6571 -1.5465 18 6 1.4471 10.7392 0.9223 19 1 1.1199 9.9945 1.6328 20 6 1.0364 12.0484 1.0574 21 7 0.2458 12.3904 2.0511 22 14 1.6030 13.3365 -0.1712 23 1 0.6344 13.4091 -1.2944 24 1 1.6832 14.6588 0.4996 25 1 2.9419 12.9653 -0.6954 26 7 3.3355 6.0609 -0.0065 27 6 1.9163 3.6049 -0.0004 28 6 1.2901 2.3746 0.0000 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8899 31 1 -0.3634 0.5138 -0.8899 32 1 4.0197 0.3774 -0.0002 33 1 5.1376 2.5692 0.0081 34 1 6.0403 4.3433 -0.0015 35 1 6.4537 6.9591 -0.0040 36 1 1.2539 7.6562 0.8041 37 1 0.6990 8.3852 -0.7220 38 1 1.8831 7.0565 -0.7493 39 1 1.4492 11.7242 -1.6045 40 1 2.3201 10.3739 -2.3700 41 1 0.7334 10.0943 -1.6132 42 1 -0.0434 13.3114 2.1459 43 1 1.3278 4.5104 -0.0008 44 1 0.2116 2.3177 0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:46 Heat of formation + Delta-G solvation = 68.668201 kcal Electronic energy + Delta-G solvation = -27423.871030 eV Core-core repulsion = 23538.162502 eV Total energy + Delta-G solvation = -3885.708527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.84830 -40.48209 -38.92521 -37.86434 -35.47981 -33.38928 -32.63263 -31.90500 -30.81324 -30.25490 -29.03270 -27.55140 -26.17975 -25.12930 -24.37475 -23.41131 -22.31072 -20.91717 -20.51805 -19.02940 -18.47248 -17.93164 -16.94361 -16.46981 -16.28781 -16.15275 -16.01491 -15.58803 -15.11285 -14.66446 -14.32816 -14.05738 -13.92860 -13.83431 -13.43482 -13.10127 -12.99892 -12.86626 -12.85952 -12.36551 -12.26583 -12.16079 -11.85894 -11.67703 -11.65236 -11.31882 -11.10698 -10.70101 -10.31227 -10.09929 -9.79434 -9.63559 -9.55699 -9.36454 -9.24244 -9.15899 -8.59488 -8.10043 -7.64262 -6.10122 -4.10397 0.53296 0.82195 1.97937 2.25616 2.31178 2.80683 3.26683 3.32877 3.40137 3.43232 3.80680 3.92858 4.17609 4.34095 4.39163 4.43439 4.64808 4.70368 4.72511 4.78698 4.91561 5.04702 5.09367 5.21485 5.27008 5.52138 5.52615 5.65181 5.77616 5.84461 5.90309 5.99328 6.06112 6.20929 6.26100 6.35572 6.41591 6.48687 6.60416 6.80402 6.88412 6.95972 7.17298 7.39688 7.66899 7.91600 8.24303 8.50837 8.88368 8.94817 9.50676 11.02775 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018479 B = 0.002738 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.864486 B =10223.352327 C =11317.415188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.129 4.129 5 C -0.089 4.089 6 C 0.106 3.894 7 N -0.241 5.241 8 C -0.024 4.024 9 C -0.170 4.170 10 C 0.012 3.988 11 C 0.587 3.413 12 O -0.544 6.544 13 N -0.570 5.570 14 C 0.085 3.915 15 C 0.229 3.771 16 H 0.064 0.936 17 C -0.161 4.161 18 C -0.525 4.525 19 H 0.079 0.921 20 C 0.075 3.925 21 N -0.896 5.896 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.262 1.262 26 N -0.256 5.256 27 C -0.068 4.068 28 C -0.186 4.186 29 H 0.101 0.899 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.182 0.818 35 H 0.166 0.834 36 H 0.050 0.950 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.034 0.966 41 H 0.057 0.943 42 H 0.265 0.735 43 H 0.147 0.853 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -26.569 -6.595 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.229 6.229 3 C 0.078 3.922 4 C -0.148 4.148 5 C -0.110 4.110 6 C 0.015 3.985 7 N -0.022 5.022 8 C -0.163 4.163 9 C -0.198 4.198 10 C -0.149 4.149 11 C 0.372 3.628 12 O -0.421 6.421 13 N -0.299 5.299 14 C -0.059 4.059 15 C 0.127 3.873 16 H 0.082 0.918 17 C -0.219 4.219 18 C -0.563 4.563 19 H 0.097 0.903 20 C -0.127 4.127 21 N -0.534 5.534 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.221 1.221 25 H -0.187 1.187 26 N -0.089 5.089 27 C -0.087 4.087 28 C -0.205 4.205 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.199 0.801 35 H 0.184 0.816 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.165 0.835 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.708 -26.423 -6.441 27.331 hybrid contribution 0.629 1.012 -0.476 1.283 sum 3.337 -25.411 -6.917 26.546 Atomic orbital electron populations 1.23128 0.77915 1.04253 1.01762 1.86078 1.21768 1.26534 1.88470 1.19106 0.92365 0.84407 0.96348 1.20194 0.91406 0.97871 1.05355 1.20632 1.00233 0.89694 1.00427 1.17544 0.92301 0.81450 1.07233 1.42874 1.04598 1.03942 1.50825 1.22927 0.85688 0.98442 1.09264 1.21826 0.98831 0.91997 1.07118 1.22415 0.91218 0.93918 1.07352 1.16914 0.83435 0.84428 0.78022 1.90746 1.45727 1.53845 1.51784 1.47749 1.04948 1.08806 1.68446 1.21892 0.90338 0.91850 1.01773 1.19356 0.97734 0.76522 0.93687 0.91823 1.22468 1.00651 1.00675 0.98134 1.21160 1.29044 0.95603 1.10504 0.90295 1.24863 0.94378 0.98071 0.95437 1.69878 1.34294 1.18589 1.30602 0.86919 0.80095 0.80834 0.80885 1.20407 1.22143 1.18701 1.73890 1.25087 0.90126 1.19803 1.20823 0.92116 0.98860 0.96933 1.21188 1.00703 0.91269 1.07330 0.88016 0.92284 0.92319 0.84020 0.84160 0.80119 0.81614 0.93108 0.91175 0.90438 0.93050 0.94714 0.92442 0.92475 0.83516 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.47 10.50 -19.50 -0.20 -2.68 16 3 C 0.12 1.04 6.69 -39.20 -0.26 0.78 16 4 C -0.13 -0.99 9.98 -39.46 -0.39 -1.38 16 5 C -0.09 -0.73 9.42 -39.42 -0.37 -1.10 16 6 C 0.11 1.15 6.66 -83.57 -0.56 0.60 16 7 N -0.24 -3.19 3.52 -10.54 -0.04 -3.23 16 8 C -0.02 -0.28 10.78 -16.80 -0.18 -0.46 16 9 C -0.17 -2.49 10.80 -39.36 -0.43 -2.92 16 10 C 0.01 0.22 6.82 -82.75 -0.56 -0.34 16 11 C 0.59 13.02 7.68 -12.42 -0.10 12.92 16 12 O -0.54 -13.60 16.26 5.30 0.09 -13.51 16 13 N -0.57 -12.78 2.75 -176.45 -0.49 -13.27 16 14 C 0.09 1.60 8.83 59.85 0.53 2.13 16 15 C 0.23 5.75 2.22 -69.09 -0.15 5.60 16 16 H 0.06 1.75 5.96 -51.93 -0.31 1.44 16 17 C -0.16 -3.58 8.66 37.16 0.32 -3.26 16 18 C -0.52 -14.99 8.95 -34.44 -0.31 -15.30 16 19 H 0.08 2.44 7.89 -52.49 -0.41 2.03 16 20 C 0.08 2.18 5.45 -17.82 -0.10 2.09 16 21 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 22 Si 0.88 22.19 24.37 -169.99 -4.14 18.05 16 23 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 H -0.26 -6.50 6.53 56.52 0.37 -6.13 16 26 N -0.26 -4.13 7.67 33.42 0.26 -3.88 16 27 C -0.07 -0.70 9.59 -39.42 -0.38 -1.08 16 28 C -0.19 -1.57 9.03 -39.46 -0.36 -1.92 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 0.78 6.64 -52.48 -0.35 0.44 16 34 H 0.18 1.25 6.95 -52.49 -0.37 0.89 16 35 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 1.28 6.44 -51.93 -0.33 0.94 16 38 H 0.08 1.30 5.35 -51.93 -0.28 1.02 16 39 H 0.05 1.18 3.27 -51.92 -0.17 1.01 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 1.19 6.67 -51.93 -0.35 0.84 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.15 1.61 7.64 -52.49 -0.40 1.20 16 44 H 0.14 0.88 6.29 -52.49 -0.33 0.55 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -35.57 358.17 -6.05 -41.61 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.39 Total: 0.75 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.30 Total: -2.55 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: 0.51 Total: -47.07 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.12 Total: -16.19 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.57 -6.05 -41.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.282 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds