Wall clock time and date at job start Tue Mar 31 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35928 * 117.00055 * 2 1 4 4 C 1.38759 * 119.98975 * 179.97438 * 3 2 1 5 5 C 1.38054 * 120.01299 * 179.97438 * 4 3 2 6 6 C 1.38866 * 119.98658 * 359.97438 * 5 4 3 7 7 N 1.40182 * 120.01133 * 180.02562 * 6 5 4 8 8 C 1.35842 * 124.95630 * 180.33224 * 7 6 5 9 9 C 1.35368 * 107.12626 * 180.15997 * 8 7 6 10 10 C 1.41512 * 105.56090 * 359.59400 * 9 8 7 11 11 C 1.47648 * 126.44669 * 180.26135 * 10 9 8 12 12 O 1.21586 * 119.99624 * 353.46372 * 11 10 9 13 13 N 1.34770 * 120.00187 * 173.46582 * 11 10 9 14 14 C 1.46504 * 120.00066 * 3.48511 * 13 11 10 15 15 C 1.46499 * 120.00004 * 183.48150 * 13 11 10 16 16 H 1.09002 * 109.47489 * 0.02562 * 15 13 11 17 17 C 1.52998 * 109.47400 * 240.00048 * 15 13 11 18 18 C 1.50702 * 109.46889 * 119.99952 * 15 13 11 19 19 H 1.08002 * 120.00091 * 0.02562 * 18 15 13 20 20 C 1.37878 * 119.99868 * 179.97438 * 18 15 13 21 21 N 1.31520 * 120.00122 * 0.02562 * 20 18 15 22 22 Si 1.86803 * 119.99911 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.47007 * 60.00292 * 22 20 18 24 24 H 1.48502 * 109.47189 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47350 * 300.00519 * 22 20 18 26 26 N 1.28478 * 124.95566 * 0.02600 * 7 6 5 27 27 C 1.38869 * 119.97176 * 0.27467 * 6 5 4 28 28 C 1.38045 * 119.98920 * 359.42626 * 27 6 5 29 29 H 1.08995 * 109.47782 * 300.00148 * 1 2 3 30 30 H 1.08999 * 109.47081 * 60.00374 * 1 2 3 31 31 H 1.09003 * 109.47062 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.99322 * 359.97438 * 4 3 2 33 33 H 1.07993 * 120.00220 * 180.02562 * 5 4 3 34 34 H 1.07994 * 126.43514 * 0.05192 * 8 7 6 35 35 H 1.08004 * 127.21399 * 179.85090 * 9 8 7 36 36 H 1.08999 * 109.46983 * 84.08781 * 14 13 11 37 37 H 1.09002 * 109.47110 * 204.08989 * 14 13 11 38 38 H 1.09001 * 109.46670 * 324.09050 * 14 13 11 39 39 H 1.09000 * 109.47457 * 180.02562 * 17 15 13 40 40 H 1.09001 * 109.47377 * 300.00159 * 17 15 13 41 41 H 1.09003 * 109.47326 * 59.99974 * 17 15 13 42 42 H 0.96995 * 119.99380 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.00196 * 179.72354 * 27 6 5 44 44 H 1.08001 * 119.99486 * 180.29962 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 3.4318 1.2835 0.0005 5 6 4.0590 2.5133 0.0000 6 6 3.3029 3.6781 -0.0016 7 7 3.9393 4.9271 -0.0027 8 6 3.3007 6.1260 0.0022 9 6 4.2550 7.0861 -0.0045 10 6 5.4894 6.3942 -0.0038 11 6 6.8353 7.0015 -0.0042 12 8 6.9591 8.2050 -0.1250 13 7 7.9264 6.2219 0.1293 14 6 7.7822 4.7656 0.1980 15 6 9.2568 6.8306 0.2056 16 1 9.1648 7.9146 0.1383 17 6 10.1189 6.3188 -0.9501 18 6 9.9033 6.4622 1.5161 19 1 9.3761 5.8369 2.2214 20 6 11.1682 6.9227 1.8142 21 7 11.8104 7.6839 0.9551 22 14 11.9694 6.4667 3.4389 23 1 12.0941 4.9899 3.5320 24 1 13.3185 7.0827 3.5157 25 1 11.1328 6.9645 4.5603 26 7 5.2117 5.1049 -0.0028 27 6 1.9162 3.6050 0.0031 28 6 1.2900 2.3747 -0.0026 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 4.0197 0.3775 0.0014 33 1 5.1375 2.5694 0.0000 34 1 2.2323 6.2836 0.0082 35 1 4.1054 8.1557 -0.0054 36 1 7.7257 4.3580 -0.8113 37 1 8.6423 4.3393 0.7144 38 1 6.8713 4.5160 0.7422 39 1 11.1089 6.7714 -0.8931 40 1 10.2110 5.2348 -0.8825 41 1 9.6513 6.5852 -1.8980 42 1 12.7001 8.0081 1.1651 43 1 1.3276 4.5105 0.0063 44 1 0.2115 2.3178 -0.0039 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075582815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:49 Heat of formation + Delta-G solvation = 59.276408 kcal Electronic energy + Delta-G solvation = -27334.301816 eV Core-core repulsion = 23448.186030 eV Total energy + Delta-G solvation = -3886.115786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.79107 -40.47630 -38.74610 -37.83246 -35.25357 -33.35914 -32.66514 -31.88910 -30.61856 -29.63698 -28.85550 -27.50050 -25.99715 -25.16333 -24.13234 -23.64595 -22.02114 -20.96594 -20.40766 -19.01498 -18.44605 -17.89948 -16.62073 -16.40857 -16.29632 -16.11880 -15.90855 -15.31300 -15.03075 -14.44863 -14.26438 -14.18426 -14.03424 -13.63628 -13.30348 -13.09994 -13.01384 -12.73402 -12.44718 -12.37842 -12.20302 -11.69510 -11.63357 -11.50713 -11.30984 -11.02506 -10.80569 -10.64830 -10.30477 -10.17235 -10.10973 -9.75229 -9.52777 -9.22862 -9.13091 -9.06404 -8.37429 -8.06660 -7.48396 -6.01788 -4.09449 0.56345 0.82632 2.04362 2.32044 2.35816 2.81242 3.32400 3.34939 3.36906 3.39287 3.95621 4.07635 4.16756 4.31421 4.44419 4.50362 4.60286 4.67146 4.69601 4.80983 4.98633 5.05603 5.12941 5.29053 5.36969 5.49942 5.54627 5.69842 5.77622 5.84803 5.93993 6.14636 6.17427 6.29844 6.45952 6.63184 6.81412 6.85340 6.92667 7.01490 7.14414 7.51225 7.59709 7.77584 7.97414 8.09990 8.25415 8.59255 8.87995 9.09899 9.56461 11.03540 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017783 B = 0.002650 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.128729 B =10564.076536 C =11486.116286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.128 4.128 5 C -0.070 4.070 6 C 0.108 3.892 7 N -0.243 5.243 8 C -0.026 4.026 9 C -0.171 4.171 10 C 0.015 3.985 11 C 0.584 3.416 12 O -0.546 6.546 13 N -0.574 5.574 14 C 0.082 3.918 15 C 0.257 3.743 16 H 0.065 0.935 17 C -0.145 4.145 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 N -0.257 5.257 27 C -0.090 4.090 28 C -0.186 4.186 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.180 0.820 35 H 0.166 0.834 36 H 0.040 0.960 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.030 0.970 41 H 0.012 0.988 42 H 0.264 0.736 43 H 0.136 0.864 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.473 -14.181 -2.954 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.147 4.147 5 C -0.089 4.089 6 C 0.017 3.983 7 N -0.024 5.024 8 C -0.165 4.165 9 C -0.198 4.198 10 C -0.147 4.147 11 C 0.368 3.632 12 O -0.423 6.423 13 N -0.304 5.304 14 C -0.062 4.062 15 C 0.157 3.843 16 H 0.082 0.918 17 C -0.204 4.204 18 C -0.564 4.564 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.203 1.203 26 N -0.090 5.090 27 C -0.110 4.110 28 C -0.206 4.206 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.120 0.880 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.197 0.803 35 H 0.183 0.817 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.154 0.846 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.624 -14.739 -3.045 28.011 hybrid contribution -0.276 0.608 0.897 1.118 sum -23.900 -14.132 -2.147 27.848 Atomic orbital electron populations 1.23103 0.78148 1.04230 1.01489 1.86103 1.21568 1.26562 1.88505 1.19106 0.92384 0.84330 0.96526 1.20367 0.91328 0.98335 1.04663 1.20857 1.01380 0.89359 0.97316 1.17550 0.91325 0.82486 1.06902 1.42883 1.03860 1.04656 1.51046 1.22900 1.00030 0.84092 1.09492 1.21839 0.90150 1.00751 1.07053 1.22561 0.96394 0.88914 1.06835 1.16950 0.81837 0.86085 0.78340 1.90747 1.85611 1.13816 1.52101 1.48141 1.07775 1.06741 1.67740 1.21886 1.02769 0.80927 1.00636 1.19011 0.75362 0.95426 0.94454 0.91765 1.22076 1.03326 0.99399 0.95582 1.21288 1.00728 1.32324 1.02013 0.92236 1.24888 0.96938 0.94846 0.97096 1.69877 1.13526 1.34107 1.35078 0.86544 0.78370 0.78593 0.83803 1.20246 1.21187 1.20260 1.73909 0.95320 1.19829 1.19928 1.20598 0.91521 0.98606 1.00315 1.21021 1.00338 0.91205 1.07987 0.92462 0.92465 0.88046 0.83914 0.83126 0.80287 0.81653 0.94096 0.90562 0.90508 0.88768 0.95105 0.96933 0.92650 0.84605 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.09 16 2 O -0.31 -2.50 10.50 -19.51 -0.20 -2.71 16 3 C 0.12 1.05 6.69 -39.20 -0.26 0.79 16 4 C -0.13 -1.17 9.98 -39.46 -0.39 -1.57 16 5 C -0.07 -0.75 9.59 -39.42 -0.38 -1.12 16 6 C 0.11 1.22 6.66 -83.57 -0.56 0.66 16 7 N -0.24 -3.33 3.52 -10.53 -0.04 -3.37 16 8 C -0.03 -0.31 10.78 -16.80 -0.18 -0.50 16 9 C -0.17 -2.61 10.80 -39.36 -0.43 -3.04 16 10 C 0.01 0.28 6.82 -82.76 -0.56 -0.29 16 11 C 0.58 13.50 7.68 -12.42 -0.10 13.40 16 12 O -0.55 -14.25 16.26 5.29 0.09 -14.17 16 13 N -0.57 -13.43 2.75 -176.45 -0.49 -13.92 16 14 C 0.08 1.59 8.56 59.85 0.51 2.10 16 15 C 0.26 6.87 2.63 -69.08 -0.18 6.69 16 16 H 0.06 1.96 6.90 -51.93 -0.36 1.60 16 17 C -0.15 -3.63 8.97 37.16 0.33 -3.30 16 18 C -0.52 -14.61 7.95 -34.44 -0.27 -14.89 16 19 H 0.06 1.64 7.43 -52.49 -0.39 1.25 16 20 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 21 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 22 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 N -0.26 -4.29 7.67 33.42 0.26 -4.03 16 27 C -0.09 -0.75 9.42 -39.42 -0.37 -1.12 16 28 C -0.19 -1.36 9.03 -39.46 -0.36 -1.71 16 29 H 0.06 0.18 7.66 -51.93 -0.40 -0.22 16 30 H 0.06 0.17 7.65 -51.93 -0.40 -0.22 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.15 1.68 7.64 -52.49 -0.40 1.28 16 34 H 0.18 1.34 6.95 -52.49 -0.37 0.97 16 35 H 0.17 2.31 8.06 -52.48 -0.42 1.89 16 36 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.52 7.12 -51.93 -0.37 1.15 16 38 H 0.08 1.39 5.35 -51.93 -0.28 1.11 16 39 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 40 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 41 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.14 0.81 6.64 -52.49 -0.35 0.46 16 44 H 0.14 0.63 6.29 -52.49 -0.33 0.30 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -34.09 365.78 -7.16 -41.25 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.60 Total: 0.97 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -2.30 Total: -1.08 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.36 Total: -46.22 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.12 Total: -16.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.09 -7.16 -41.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075582815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.525 kcal (2) G-P(sol) polarization free energy of solvation -34.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds