Wall clock time and date at job start Tue Mar 31 2020 05:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00058 * 2 1 4 4 C 1.38453 * 120.00059 * 180.02562 * 2 1 3 5 5 C 1.39404 * 119.53960 * 4.72871 * 4 2 1 6 6 C 1.36847 * 119.38189 * 179.76636 * 5 4 2 7 7 C 1.40354 * 118.49325 * 0.49186 * 6 5 4 8 8 C 1.47540 * 120.47876 * 179.76776 * 7 6 5 9 9 O 1.21595 * 119.99766 * 311.94922 * 8 7 6 10 10 N 1.34779 * 119.99979 * 131.94560 * 8 7 6 11 11 C 1.46500 * 119.99808 * 4.94430 * 10 8 7 12 12 C 1.50699 * 109.46978 * 95.81531 * 11 10 8 13 13 H 1.08003 * 120.00074 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00215 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99947 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47170 * 89.99988 * 16 14 12 18 18 H 1.48503 * 109.47411 * 210.00099 * 16 14 12 19 19 H 1.48503 * 109.46972 * 329.99899 * 16 14 12 20 20 C 1.46495 * 119.99995 * 184.94855 * 10 8 7 21 21 C 1.50696 * 109.47646 * 89.99674 * 20 10 8 22 22 C 1.34521 * 125.78642 * 89.70867 * 21 20 10 23 23 C 1.41378 * 106.83700 * 179.89051 * 22 21 20 24 24 C 1.34516 * 106.84517 * 0.38435 * 23 22 21 25 25 O 1.34300 * 125.79357 * 270.03024 * 21 20 10 26 26 C 1.39558 * 119.04724 * 359.75317 * 7 6 5 27 27 N 1.31682 * 120.52060 * 359.97438 * 26 7 6 28 28 H 1.08996 * 109.47360 * 89.99335 * 1 2 3 29 29 H 1.09008 * 109.46691 * 329.99585 * 1 2 3 30 30 H 1.08993 * 109.47083 * 210.00159 * 1 2 3 31 31 H 1.09006 * 109.47366 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47233 * 120.00026 * 3 2 1 33 33 H 1.09004 * 109.47363 * 240.00406 * 3 2 1 34 34 H 1.08005 * 120.30484 * 359.97438 * 5 4 2 35 35 H 1.07997 * 120.75496 * 180.22144 * 6 5 4 36 36 H 1.08996 * 109.46766 * 215.81133 * 11 10 8 37 37 H 1.08998 * 109.47372 * 335.81963 * 11 10 8 38 38 H 0.97006 * 119.99720 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46998 * 210.00195 * 20 10 8 40 40 H 1.09007 * 109.46811 * 329.99970 * 20 10 8 41 41 H 1.07997 * 126.57817 * 0.03880 * 22 21 20 42 42 H 1.08006 * 126.57657 * 180.16529 * 23 22 21 43 43 H 1.07995 * 125.79035 * 179.74917 * 24 23 22 44 44 H 1.07999 * 119.73931 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1990 -0.0005 5 6 1.4542 -2.3986 -0.1011 6 6 2.1420 -3.5816 -0.1061 7 6 3.5409 -3.5432 0.0015 8 6 4.3257 -4.7926 0.0057 9 8 3.9962 -5.7150 0.7262 10 7 5.4076 -4.9115 -0.7891 11 6 5.8682 -3.7646 -1.5758 12 6 6.9643 -3.0502 -0.8279 13 1 7.2853 -3.4139 0.1371 14 6 7.5572 -1.9324 -1.3755 15 7 8.5141 -1.3093 -0.7230 16 14 7.0014 -1.3030 -3.0441 17 1 5.8996 -0.3241 -2.8620 18 1 8.1417 -0.6430 -3.7291 19 1 6.5210 -2.4415 -3.8676 20 6 6.1230 -6.1876 -0.8665 21 6 5.5332 -7.0281 -1.9695 22 6 5.9255 -7.0253 -3.2562 23 6 5.1093 -7.9588 -3.9353 24 6 4.2614 -8.4701 -3.0248 25 8 4.5228 -7.9027 -1.8359 26 6 4.1789 -2.3063 0.1041 27 7 3.4795 -1.1906 0.0996 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8899 0.5138 31 1 1.4892 2.0973 0.0005 32 1 2.8242 1.3264 0.8900 33 1 2.8241 1.3265 -0.8900 34 1 0.3768 -2.3940 -0.1776 35 1 1.6200 -4.5236 -0.1866 36 1 6.2502 -4.1123 -2.5356 37 1 5.0362 -3.0804 -1.7420 38 1 8.9315 -0.5230 -1.1084 39 1 7.1765 -6.0014 -1.0753 40 1 6.0283 -6.7153 0.0826 41 1 6.7144 -6.4266 -3.6872 42 1 5.1553 -8.2103 -4.9847 43 1 3.4995 -9.2109 -3.2172 44 1 5.2548 -2.2638 0.1878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079333490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:03 Heat of formation + Delta-G solvation = 45.893941 kcal Electronic energy + Delta-G solvation = -28412.948193 eV Core-core repulsion = 24526.252100 eV Total energy + Delta-G solvation = -3886.696093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24744 -40.26295 -38.76454 -36.24110 -35.35528 -32.87880 -32.56363 -32.18843 -31.12867 -29.67154 -28.22988 -27.97107 -26.20241 -24.80828 -22.86636 -22.65979 -21.60914 -21.38418 -20.35925 -18.98253 -17.41613 -17.17029 -16.95143 -16.69434 -16.26029 -15.87724 -15.31668 -15.14903 -14.67374 -14.39129 -14.21774 -14.07176 -13.98963 -13.13030 -13.00065 -12.80287 -12.61850 -12.57181 -12.54963 -12.44155 -12.33599 -12.32484 -12.18797 -11.83295 -11.53300 -11.38308 -10.94229 -10.72522 -10.36257 -9.82052 -9.68827 -9.64443 -9.47388 -9.34085 -8.90957 -8.71988 -8.24588 -7.93186 -7.33898 -6.29374 -4.32525 1.48792 1.77573 1.95691 2.82997 3.02959 3.18318 3.20316 3.25081 3.28874 3.50124 3.88398 4.23648 4.35658 4.78614 4.94428 5.00350 5.01645 5.17971 5.20833 5.28227 5.29726 5.34421 5.40836 5.49471 5.54552 5.58049 5.73722 5.75081 5.97732 6.03518 6.04247 6.16621 6.20597 6.34841 6.37796 6.38541 6.55555 6.66942 6.76547 7.00173 7.06070 7.19986 7.36709 7.45105 7.53483 8.00596 8.32169 8.53323 8.73857 8.83631 9.29570 10.81529 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.005050 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.523843 B = 5542.926084 C = 7362.425183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.618 5.618 3 C 0.105 3.895 4 C 0.407 3.593 5 C -0.257 4.257 6 C 0.009 3.991 7 C -0.244 4.244 8 C 0.576 3.424 9 O -0.557 6.557 10 N -0.583 5.583 11 C 0.203 3.797 12 C -0.552 4.552 13 H 0.085 0.915 14 C 0.088 3.912 15 N -0.878 5.878 16 Si 0.863 3.137 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.264 1.264 20 C 0.196 3.804 21 C -0.015 4.015 22 C -0.204 4.204 23 C -0.217 4.217 24 C -0.052 4.052 25 O -0.167 6.167 26 C 0.195 3.805 27 N -0.540 5.540 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.269 0.731 39 H 0.118 0.882 40 H 0.095 0.905 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.197 0.803 44 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 -2.330 -3.641 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.332 5.332 3 C -0.038 4.038 4 C 0.172 3.828 5 C -0.282 4.282 6 C -0.017 4.017 7 C -0.251 4.251 8 C 0.365 3.635 9 O -0.437 6.437 10 N -0.313 5.313 11 C 0.082 3.918 12 C -0.590 4.590 13 H 0.103 0.897 14 C -0.118 4.118 15 N -0.514 5.514 16 Si 0.689 3.311 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.188 1.188 20 C 0.073 3.927 21 C -0.067 4.067 22 C -0.224 4.224 23 C -0.236 4.236 24 C -0.120 4.120 25 O -0.062 6.062 26 C 0.037 3.963 27 N -0.257 5.257 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.213 0.787 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.709 -1.703 -2.927 13.152 hybrid contribution -0.614 -0.241 -1.487 1.627 sum -13.323 -1.944 -4.414 14.169 Atomic orbital electron populations 1.21691 0.78806 1.02818 1.01312 1.46087 1.04952 1.03444 1.78714 1.21513 0.96235 0.83390 1.02664 1.18614 0.89211 0.85541 0.89423 1.20937 1.00480 0.91684 1.15080 1.20932 0.92355 0.97901 0.90559 1.20574 0.94452 0.95315 1.14767 1.18022 0.79936 0.86402 0.79182 1.90707 1.70095 1.41473 1.41376 1.47845 1.27739 1.11481 1.44196 1.20024 0.95857 0.84038 0.91901 1.21327 1.18867 1.11813 1.06987 0.89671 1.24809 0.94067 0.95909 0.96969 1.69877 1.23921 1.19463 1.38138 0.87030 0.79154 0.80169 0.84768 1.19323 1.20766 1.18837 1.19729 0.95565 0.82298 0.95157 1.23275 0.91010 0.94634 0.97740 1.21675 1.04411 1.03175 0.93144 1.21788 0.99627 1.01578 1.00625 1.23965 1.02978 1.02084 0.82967 1.84105 1.43873 1.44909 1.33330 1.24287 1.02387 0.84763 0.84910 1.67510 1.05091 1.31850 1.21259 0.93185 0.91237 0.91133 0.91652 0.92094 0.92402 0.85275 0.85112 0.94763 0.94649 0.92099 0.86433 0.88702 0.83386 0.83882 0.78675 0.78037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.89 10.01 59.85 0.60 1.49 16 2 N -0.62 -8.48 3.37 -189.70 -0.64 -9.12 16 3 C 0.10 1.32 10.16 59.85 0.61 1.93 16 4 C 0.41 6.95 7.36 -155.28 -1.14 5.81 16 5 C -0.26 -3.98 9.12 -39.65 -0.36 -4.34 16 6 C 0.01 0.15 9.81 -39.29 -0.39 -0.24 16 7 C -0.24 -4.93 4.97 -104.82 -0.52 -5.45 16 8 C 0.58 12.41 7.25 -12.47 -0.09 12.32 16 9 O -0.56 -12.93 16.58 5.28 0.09 -12.84 16 10 N -0.58 -12.09 2.44 -177.67 -0.43 -12.53 16 11 C 0.20 4.46 3.73 -5.19 -0.02 4.44 16 12 C -0.55 -13.75 7.41 -34.44 -0.26 -14.00 16 13 H 0.09 2.33 8.06 -52.48 -0.42 1.91 16 14 C 0.09 2.29 5.47 -17.82 -0.10 2.20 16 15 N -0.88 -24.44 13.96 55.43 0.77 -23.66 16 16 Si 0.86 19.76 27.47 -169.99 -4.67 15.09 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 20 C 0.20 3.60 5.99 -5.20 -0.03 3.57 16 21 C -0.01 -0.26 6.90 -35.62 -0.25 -0.51 16 22 C -0.20 -3.29 10.81 -39.70 -0.43 -3.72 16 23 C -0.22 -3.04 10.91 -39.70 -0.43 -3.47 16 24 C -0.05 -0.71 12.09 29.42 0.36 -0.36 16 25 O -0.17 -2.92 10.65 5.72 0.06 -2.86 16 26 C 0.19 4.13 8.69 -17.12 -0.15 3.98 16 27 N -0.54 -10.90 9.54 -12.14 -0.12 -11.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.49 7.92 -51.92 -0.41 0.08 16 30 H 0.07 0.60 6.35 -51.93 -0.33 0.27 16 31 H 0.06 0.59 7.79 -51.93 -0.40 0.18 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.13 1.55 6.22 -52.48 -0.33 1.23 16 35 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 36 H 0.03 0.75 7.17 -51.93 -0.37 0.38 16 37 H 0.04 0.80 4.82 -51.93 -0.25 0.55 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 39 H 0.12 2.01 8.07 -51.93 -0.42 1.59 16 40 H 0.09 1.74 7.36 -51.93 -0.38 1.36 16 41 H 0.15 2.25 8.06 -52.49 -0.42 1.83 16 42 H 0.14 1.61 8.06 -52.48 -0.42 1.18 16 43 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.20 4.75 4.74 -52.49 -0.25 4.50 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -31.72 368.93 -7.67 -39.39 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -5.69 Total: 8.34 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -2.60 Total: 3.65 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.42 Total: -56.32 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.15 Total: -15.70 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.67 Total: 15.09 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.72 -7.67 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079333490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.281 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds