Wall clock time and date at job start Tue Mar 31 2020 05:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00058 * 2 1 4 4 C 1.38453 * 120.00059 * 180.02562 * 2 1 3 5 5 C 1.39404 * 119.53960 * 4.72871 * 4 2 1 6 6 C 1.36847 * 119.38189 * 179.76636 * 5 4 2 7 7 C 1.40354 * 118.49325 * 0.49186 * 6 5 4 8 8 C 1.47540 * 120.47876 * 179.76776 * 7 6 5 9 9 O 1.21595 * 119.99766 * 311.94922 * 8 7 6 10 10 N 1.34779 * 119.99979 * 131.94560 * 8 7 6 11 11 C 1.46500 * 119.99808 * 4.94430 * 10 8 7 12 12 C 1.50699 * 109.46978 * 95.81531 * 11 10 8 13 13 H 1.08003 * 120.00074 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00215 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99867 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99947 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47170 * 89.99988 * 16 14 12 18 18 H 1.48503 * 109.47411 * 210.00099 * 16 14 12 19 19 H 1.48503 * 109.46972 * 329.99899 * 16 14 12 20 20 C 1.46495 * 119.99995 * 184.94855 * 10 8 7 21 21 C 1.50696 * 109.47646 * 89.99674 * 20 10 8 22 22 C 1.34521 * 125.78642 * 89.70867 * 21 20 10 23 23 C 1.41378 * 106.83700 * 179.89051 * 22 21 20 24 24 C 1.34516 * 106.84517 * 0.38435 * 23 22 21 25 25 O 1.34300 * 125.79357 * 270.03024 * 21 20 10 26 26 C 1.39558 * 119.04724 * 359.75317 * 7 6 5 27 27 N 1.31682 * 120.52060 * 359.97438 * 26 7 6 28 28 H 1.08996 * 109.47360 * 89.99335 * 1 2 3 29 29 H 1.09008 * 109.46691 * 329.99585 * 1 2 3 30 30 H 1.08993 * 109.47083 * 210.00159 * 1 2 3 31 31 H 1.09006 * 109.47366 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47233 * 120.00026 * 3 2 1 33 33 H 1.09004 * 109.47363 * 240.00406 * 3 2 1 34 34 H 1.08005 * 120.30484 * 359.97438 * 5 4 2 35 35 H 1.07997 * 120.75496 * 180.22144 * 6 5 4 36 36 H 1.08996 * 109.46766 * 215.81133 * 11 10 8 37 37 H 1.08998 * 109.47372 * 335.81963 * 11 10 8 38 38 H 0.97006 * 119.99720 * 179.97438 * 15 14 12 39 39 H 1.09001 * 109.46998 * 210.00195 * 20 10 8 40 40 H 1.09007 * 109.46811 * 329.99970 * 20 10 8 41 41 H 1.07997 * 126.57817 * 0.03880 * 22 21 20 42 42 H 1.08006 * 126.57657 * 180.16529 * 23 22 21 43 43 H 1.07995 * 125.79035 * 179.74917 * 24 23 22 44 44 H 1.07999 * 119.73931 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1573 -1.1990 -0.0005 5 6 1.4542 -2.3986 -0.1011 6 6 2.1420 -3.5816 -0.1061 7 6 3.5409 -3.5432 0.0015 8 6 4.3257 -4.7926 0.0057 9 8 3.9962 -5.7150 0.7262 10 7 5.4076 -4.9115 -0.7891 11 6 5.8682 -3.7646 -1.5758 12 6 6.9643 -3.0502 -0.8279 13 1 7.2853 -3.4139 0.1371 14 6 7.5572 -1.9324 -1.3755 15 7 8.5141 -1.3093 -0.7230 16 14 7.0014 -1.3030 -3.0441 17 1 5.8996 -0.3241 -2.8620 18 1 8.1417 -0.6430 -3.7291 19 1 6.5210 -2.4415 -3.8676 20 6 6.1230 -6.1876 -0.8665 21 6 5.5332 -7.0281 -1.9695 22 6 5.9255 -7.0253 -3.2562 23 6 5.1093 -7.9588 -3.9353 24 6 4.2614 -8.4701 -3.0248 25 8 4.5228 -7.9027 -1.8359 26 6 4.1789 -2.3063 0.1041 27 7 3.4795 -1.1906 0.0996 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 0.8900 0.5139 30 1 -0.3633 -0.8899 0.5138 31 1 1.4892 2.0973 0.0005 32 1 2.8242 1.3264 0.8900 33 1 2.8241 1.3265 -0.8900 34 1 0.3768 -2.3940 -0.1776 35 1 1.6200 -4.5236 -0.1866 36 1 6.2502 -4.1123 -2.5356 37 1 5.0362 -3.0804 -1.7420 38 1 8.9315 -0.5230 -1.1084 39 1 7.1765 -6.0014 -1.0753 40 1 6.0283 -6.7153 0.0826 41 1 6.7144 -6.4266 -3.6872 42 1 5.1553 -8.2103 -4.9847 43 1 3.4995 -9.2109 -3.2172 44 1 5.2548 -2.2638 0.1878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079333490.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:02 Heat of formation + Delta-G solvation = 26.717568 kcal Electronic energy + Delta-G solvation = -28413.779743 eV Core-core repulsion = 24526.252100 eV Total energy + Delta-G solvation = -3887.527643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.46050 -41.71340 -40.28156 -37.42575 -37.05802 -34.71981 -33.87944 -33.57312 -32.54594 -31.02970 -29.80190 -29.08197 -27.49833 -26.08966 -24.54698 -24.21315 -22.87292 -22.59431 -21.61190 -20.49832 -19.20721 -18.52579 -18.31985 -18.14379 -17.76125 -17.22538 -16.69917 -16.29803 -16.24732 -15.90361 -15.71371 -15.39174 -15.21731 -14.74534 -14.40153 -14.24466 -14.15746 -13.95690 -13.77551 -13.69264 -13.52883 -13.45248 -13.34742 -13.11339 -12.97414 -12.70110 -12.58160 -12.48512 -12.15292 -11.72959 -11.22910 -10.97972 -10.85331 -10.81829 -10.65429 -10.31546 -9.68778 -9.41108 -8.56399 -8.32958 -6.38522 0.04478 0.39462 0.72760 1.34491 1.38605 1.43853 1.64366 1.73653 1.97847 2.17518 2.30498 2.37343 2.91086 2.99877 3.51818 3.72674 3.85527 3.93383 4.07986 4.14593 4.17254 4.18823 4.34796 4.38464 4.47370 4.53082 4.57298 4.60602 4.77029 4.79497 4.84349 4.88555 4.94107 4.94770 5.02612 5.05231 5.19603 5.21687 5.38788 5.53051 5.56968 5.64493 5.98504 6.11974 6.25797 6.29009 6.49677 6.67035 7.10292 7.17921 7.27827 8.81733 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009611 B = 0.005050 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2912.523843 B = 5542.926084 C = 7362.425183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.614 5.614 3 C 0.102 3.898 4 C 0.397 3.603 5 C -0.237 4.237 6 C 0.008 3.992 7 C -0.266 4.266 8 C 0.572 3.428 9 O -0.582 6.582 10 N -0.585 5.585 11 C 0.218 3.782 12 C -0.538 4.538 13 H 0.046 0.954 14 C 0.042 3.958 15 N -0.925 5.925 16 Si 0.920 3.080 17 H -0.273 1.273 18 H -0.278 1.278 19 H -0.244 1.244 20 C 0.195 3.805 21 C -0.045 4.045 22 C -0.203 4.203 23 C -0.223 4.223 24 C -0.042 4.042 25 O -0.192 6.192 26 C 0.181 3.819 27 N -0.570 5.570 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.174 0.826 35 H 0.149 0.851 36 H 0.043 0.957 37 H 0.036 0.964 38 H 0.270 0.730 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.153 0.847 42 H 0.174 0.826 43 H 0.239 0.761 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.469 -2.441 -5.915 17.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.327 5.327 3 C -0.041 4.041 4 C 0.161 3.839 5 C -0.261 4.261 6 C -0.018 4.018 7 C -0.274 4.274 8 C 0.362 3.638 9 O -0.463 6.463 10 N -0.314 5.314 11 C 0.097 3.903 12 C -0.576 4.576 13 H 0.064 0.936 14 C -0.160 4.160 15 N -0.563 5.563 16 Si 0.743 3.257 17 H -0.198 1.198 18 H -0.204 1.204 19 H -0.167 1.167 20 C 0.072 3.928 21 C -0.096 4.096 22 C -0.223 4.223 23 C -0.241 4.241 24 C -0.109 4.109 25 O -0.088 6.088 26 C 0.023 3.977 27 N -0.288 5.288 28 H 0.085 0.915 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.191 0.809 35 H 0.167 0.833 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.139 0.861 40 H 0.104 0.896 41 H 0.171 0.829 42 H 0.192 0.808 43 H 0.255 0.745 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.344 -1.811 -5.215 17.251 hybrid contribution 0.380 -0.175 -0.708 0.822 sum -15.964 -1.986 -5.923 17.143 Atomic orbital electron populations 1.22057 0.75649 1.04774 1.02937 1.46499 1.06830 1.02479 1.76858 1.21588 0.97133 0.84423 1.00914 1.19022 0.88450 0.87645 0.88790 1.21316 1.02380 0.90099 1.12315 1.21175 0.91043 0.99533 0.90035 1.20518 0.95873 0.93975 1.17002 1.18327 0.80045 0.86712 0.78718 1.90669 1.70873 1.42518 1.42289 1.47885 1.27727 1.11921 1.43848 1.19741 0.94634 0.84259 0.91708 1.21328 1.19014 1.11722 1.05526 0.93566 1.25478 0.94067 0.96087 1.00330 1.70000 1.25808 1.20406 1.40112 0.86120 0.78542 0.80012 0.80985 1.19828 1.20356 1.16697 1.19721 0.95800 0.81637 0.95615 1.22953 0.92623 0.96203 0.97842 1.21926 1.04379 1.03226 0.92782 1.22148 0.98980 1.00866 1.02147 1.24892 1.03035 1.01500 0.81520 1.84080 1.44035 1.45345 1.35322 1.23623 1.01172 0.85834 0.87054 1.67397 1.07140 1.31528 1.22752 0.91536 0.88536 0.90081 0.87372 0.93777 0.94333 0.80886 0.83318 0.93881 0.94651 0.92064 0.86064 0.89625 0.82921 0.80814 0.74455 0.81442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.19 10.01 127.77 1.28 2.47 16 2 N -0.61 -15.12 3.37 -754.08 -2.54 -17.66 16 3 C 0.10 2.39 10.16 127.77 1.30 3.69 16 4 C 0.40 12.95 7.36 133.25 0.98 13.93 16 5 C -0.24 -6.65 9.12 22.22 0.20 -6.45 16 6 C 0.01 0.26 9.81 22.46 0.22 0.49 16 7 C -0.27 -10.95 4.97 -19.99 -0.10 -11.05 16 8 C 0.57 25.55 7.25 86.70 0.63 26.18 16 9 O -0.58 -27.91 16.58 -4.02 -0.07 -27.98 16 10 N -0.58 -25.22 2.44 -834.27 -2.04 -27.26 16 11 C 0.22 9.86 3.73 85.63 0.32 10.18 16 12 C -0.54 -28.22 7.41 25.60 0.19 -28.03 16 13 H 0.05 2.74 8.06 -2.91 -0.02 2.71 16 14 C 0.04 2.25 5.47 84.65 0.46 2.72 16 15 N -0.93 -53.89 13.96 21.45 0.30 -53.59 16 16 Si 0.92 41.28 27.47 68.60 1.88 43.16 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.24 -10.05 6.54 99.48 0.65 -9.40 16 20 C 0.19 7.48 5.99 85.63 0.51 8.00 16 21 C -0.05 -1.59 6.90 24.83 0.17 -1.42 16 22 C -0.20 -6.30 10.81 22.19 0.24 -6.06 16 23 C -0.22 -5.60 10.91 22.19 0.24 -5.35 16 24 C -0.04 -1.05 12.09 66.97 0.81 -0.24 16 25 O -0.19 -6.56 10.65 -2.43 -0.03 -6.58 16 26 C 0.18 8.01 8.69 85.03 0.74 8.75 16 27 N -0.57 -23.37 9.54 -192.32 -1.84 -25.20 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.10 0.85 7.92 -2.38 -0.02 0.84 16 30 H 0.08 0.97 6.35 -2.39 -0.02 0.95 16 31 H 0.11 1.57 7.79 -2.38 -0.02 1.55 16 32 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.17 3.26 6.22 -2.91 -0.02 3.25 16 35 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.04 1.87 7.17 -2.39 -0.02 1.86 16 37 H 0.04 1.64 4.82 -2.39 -0.01 1.63 16 38 H 0.27 14.80 8.31 -92.70 -0.77 14.03 16 39 H 0.12 4.40 8.07 -2.39 -0.02 4.38 16 40 H 0.09 3.37 7.36 -2.38 -0.02 3.35 16 41 H 0.15 4.48 8.06 -2.91 -0.02 4.45 16 42 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.24 3.50 8.06 -2.91 -0.02 3.47 16 44 H 0.17 8.51 4.74 -2.91 -0.01 8.49 16 Total: -1.00 -73.43 368.93 4.84 -68.59 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.97 Total: 28.74 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 8.20 Total: 17.78 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.12 Total: -123.72 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.09 Total: -34.56 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.88 Total: 43.16 kcal Total: -73.43 4.84 -68.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079333490.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.310 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds