Wall clock time and date at job start Tue Mar 31 2020 05:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00394 * 2 1 4 4 H 1.48495 * 109.47245 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46701 * 299.99870 * 3 2 1 6 6 H 1.48502 * 109.47404 * 59.99637 * 3 2 1 7 7 C 1.38809 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00416 * 163.06171 * 7 2 1 9 9 N 1.36941 * 120.00317 * 343.06655 * 7 2 1 10 10 C 1.46928 * 120.62724 * 331.84281 * 9 7 2 11 11 C 1.53189 * 108.77259 * 233.62678 * 10 9 7 12 12 C 1.53045 * 109.31572 * 305.36431 * 11 10 9 13 13 C 1.52996 * 109.46320 * 181.38335 * 12 11 10 14 14 N 1.46495 * 109.47470 * 174.97144 * 13 12 11 15 15 C 1.34770 * 120.00366 * 180.02562 * 14 13 12 16 16 O 1.21563 * 120.00114 * 0.02562 * 15 14 13 17 17 C 1.47806 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.32295 * 120.59280 * 359.97438 * 17 15 14 19 19 C 1.32694 * 121.18584 * 180.02562 * 18 17 15 20 20 C 1.35475 * 122.11536 * 0.02562 * 19 18 17 21 21 N 1.36217 * 120.52553 * 359.95607 * 20 19 18 22 22 C 1.36160 * 133.92805 * 180.33396 * 21 20 19 23 23 C 1.35347 * 107.14213 * 180.11746 * 22 21 20 24 24 N 1.33564 * 108.61155 * 359.61061 * 23 22 21 25 25 C 1.31849 * 109.14174 * 0.24290 * 24 23 22 26 26 C 1.53043 * 109.52397 * 61.37100 * 12 11 10 27 27 C 1.46923 * 120.63302 * 151.85596 * 9 7 2 28 28 H 0.97009 * 119.99396 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.58811 * 113.84004 * 10 9 7 30 30 H 1.08997 * 109.70353 * 353.48224 * 10 9 7 31 31 H 1.09006 * 109.50035 * 185.41168 * 11 10 9 32 32 H 1.09004 * 109.52563 * 65.33267 * 11 10 9 33 33 H 1.09001 * 109.45597 * 301.36133 * 12 11 10 34 34 H 1.09006 * 109.46836 * 54.97566 * 13 12 11 35 35 H 1.09005 * 109.47538 * 294.97640 * 13 12 11 36 36 H 0.97008 * 119.99286 * 359.97438 * 14 13 12 37 37 H 1.07999 * 118.93940 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.73506 * 179.97438 * 20 19 18 39 39 H 1.08002 * 126.43133 * 359.97438 * 22 21 20 40 40 H 1.08004 * 125.69022 * 179.88150 * 23 22 21 41 41 H 1.09002 * 109.49879 * 58.58582 * 26 12 11 42 42 H 1.08996 * 109.49259 * 178.67907 * 26 12 11 43 43 H 1.08994 * 109.58894 * 246.15946 * 27 9 7 44 44 H 1.09003 * 109.58500 * 6.44760 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2227 -0.2719 9 7 1.3700 -2.3622 0.3465 10 6 0.2262 -2.3397 1.2684 11 6 0.4982 -3.3179 2.4154 12 6 0.8131 -4.6999 1.8382 13 6 1.0515 -5.6878 2.9819 14 7 1.2342 -7.0342 2.4343 15 6 1.4591 -8.0737 3.2620 16 8 1.5100 -7.8942 4.4632 17 6 1.6440 -9.4320 2.7093 18 7 1.5905 -9.6408 1.4040 19 6 1.7543 -10.8552 0.8951 20 6 1.9827 -11.9385 1.6760 21 7 2.0534 -11.8125 3.0305 22 6 2.2700 -12.6880 4.0505 23 6 2.2259 -11.9779 5.2019 24 7 1.9970 -10.6962 4.9037 25 6 1.8887 -10.5693 3.5958 26 6 2.0684 -4.6163 0.9668 27 6 1.8141 -3.6530 -0.1969 28 1 -0.4850 0.8402 -0.0004 29 1 -0.6769 -2.6410 0.7376 30 1 0.0965 -1.3342 1.6686 31 1 -0.3823 -3.3828 3.0549 32 1 1.3477 -2.9659 3.0007 33 1 -0.0270 -5.0407 1.2331 34 1 0.1919 -5.6819 3.6522 35 1 1.9448 -5.3959 3.5341 36 1 1.1925 -7.1776 1.4757 37 1 1.7039 -10.9842 -0.1760 38 1 2.1101 -12.9096 1.2209 39 1 2.4422 -13.7503 3.9585 40 1 2.3584 -12.3798 6.1956 41 1 2.9033 -4.2517 1.5654 42 1 2.3057 -5.6053 0.5750 43 1 1.0405 -4.0614 -0.8471 44 1 2.7333 -3.5132 -0.7658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081733577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:28 Heat of formation + Delta-G solvation = 93.345469 kcal Electronic energy + Delta-G solvation = -27202.567295 eV Core-core repulsion = 23350.221605 eV Total energy + Delta-G solvation = -3852.345690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.41352 -39.87059 -38.67925 -37.73486 -34.94156 -34.70883 -32.81565 -31.14620 -30.67736 -29.97363 -29.62669 -27.19657 -25.61926 -23.90664 -23.69849 -22.53020 -22.14301 -21.15910 -20.74587 -19.18674 -19.01193 -18.39177 -16.73325 -16.66131 -16.54542 -16.05839 -15.78398 -15.22574 -14.91290 -14.78295 -14.34547 -14.15096 -13.99211 -13.65155 -13.48487 -13.38637 -13.21268 -13.02957 -12.33093 -12.28581 -11.97884 -11.74958 -11.28920 -10.96316 -10.79754 -10.70614 -10.55659 -10.45089 -10.22071 -10.16096 -10.07649 -9.85642 -9.50784 -9.43906 -9.40036 -8.98418 -8.65308 -8.43806 -6.62907 -5.75677 -3.17792 -0.37083 0.74306 1.83721 2.32240 2.52815 2.83051 3.36669 3.39521 3.47574 3.49807 3.51021 3.64031 3.83514 4.15426 4.52807 4.56764 4.72277 4.83723 4.89543 5.14374 5.26562 5.29734 5.42655 5.45776 5.59677 5.64923 5.91298 5.97658 6.05351 6.09859 6.18235 6.23821 6.37420 6.43720 6.52147 6.64951 6.73233 6.81572 6.86092 6.95046 7.03374 7.37815 7.41376 7.53165 7.70203 7.83339 8.12585 8.49007 9.25243 9.88915 10.45666 11.32823 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.031388 B = 0.002175 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.839729 B =12867.703920 C =13308.311657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.122 3.878 14 N -0.701 5.701 15 C 0.567 3.433 16 O -0.499 6.499 17 C 0.185 3.815 18 N -0.426 5.426 19 C 0.032 3.968 20 C 0.032 3.968 21 N -0.357 5.357 22 C -0.082 4.082 23 C 0.033 3.967 24 N -0.433 5.433 25 C 0.190 3.810 26 C -0.128 4.128 27 C 0.146 3.854 28 H 0.253 0.747 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.187 0.813 38 H 0.177 0.823 39 H 0.191 0.809 40 H 0.189 0.811 41 H 0.060 0.940 42 H 0.048 0.952 43 H 0.016 0.984 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 -28.236 3.565 28.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.109 4.109 13 C 0.000 4.000 14 N -0.353 5.353 15 C 0.348 3.652 16 O -0.371 6.371 17 C 0.019 3.981 18 N -0.141 5.141 19 C -0.109 4.109 20 C -0.093 4.093 21 N -0.032 5.032 22 C -0.215 4.215 23 C -0.120 4.120 24 N -0.153 5.153 25 C -0.057 4.057 26 C -0.167 4.167 27 C 0.019 3.981 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.204 0.796 38 H 0.194 0.806 39 H 0.208 0.792 40 H 0.206 0.794 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.545 -26.768 4.289 27.228 hybrid contribution 0.626 -0.932 -0.642 1.294 sum 3.171 -27.700 3.646 28.119 Atomic orbital electron populations 1.70043 1.05242 1.25321 1.54179 1.25043 0.95291 0.98396 1.01046 0.86244 0.79383 0.84038 0.77241 1.20289 1.21799 1.21567 1.19223 0.92532 0.84858 1.41322 0.91738 1.44064 1.35909 1.01527 1.50071 1.20758 0.88606 0.98157 0.87902 1.22182 1.00421 0.94549 1.00087 1.21320 0.98911 0.95292 0.95366 1.21702 1.01924 0.79461 0.96930 1.45907 1.70982 1.07460 1.10966 1.17226 0.79072 0.82471 0.86405 1.90908 1.48824 1.83696 1.13712 1.22310 0.96525 0.92500 0.86791 1.68119 1.10518 1.24231 1.11227 1.22143 1.01288 0.86028 1.01426 1.22783 1.02404 1.03177 0.80924 1.42916 1.43651 1.10215 1.06398 1.22821 1.15335 0.97237 0.86126 1.22951 1.01266 0.88860 0.98906 1.70698 1.17357 1.18541 1.08667 1.22538 1.07604 0.85473 0.90117 1.22086 0.96973 0.98850 0.98834 1.20886 0.97508 0.86968 0.92719 0.93731 0.96442 0.89418 0.92996 0.92328 0.91146 0.91310 0.91135 0.75325 0.79628 0.80622 0.79184 0.79360 0.92141 0.93292 0.96564 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.19 55.49 0.62 -25.61 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 3 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.72 2.99 -172.32 -0.52 -15.24 16 10 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 11 C -0.13 -2.46 5.36 -26.61 -0.14 -2.60 16 12 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 13 C 0.12 1.78 5.06 -4.05 -0.02 1.76 16 14 N -0.70 -9.44 5.26 -61.26 -0.32 -9.76 16 15 C 0.57 8.51 7.81 -12.35 -0.10 8.42 16 16 O -0.50 -9.16 16.23 5.31 0.09 -9.07 16 17 C 0.18 2.40 6.97 -80.53 -0.56 1.83 16 18 N -0.43 -4.41 9.67 -8.68 -0.08 -4.50 16 19 C 0.03 0.21 11.01 -18.17 -0.20 0.01 16 20 C 0.03 0.19 11.00 -16.59 -0.18 0.01 16 21 N -0.36 -3.22 2.95 -61.13 -0.18 -3.40 16 22 C -0.08 -0.57 11.80 -16.66 -0.20 -0.77 16 23 C 0.03 0.30 11.83 -17.83 -0.21 0.09 16 24 N -0.43 -6.06 10.74 -11.28 -0.12 -6.19 16 25 C 0.19 2.47 7.66 -153.99 -1.18 1.29 16 26 C -0.13 -2.14 5.25 -26.61 -0.14 -2.27 16 27 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 28 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.41 4.93 7.03 -40.82 -0.29 4.64 16 37 H 0.19 0.54 8.06 -52.49 -0.42 0.12 16 38 H 0.18 0.23 8.06 -52.49 -0.42 -0.20 16 39 H 0.19 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.19 1.06 8.06 -52.48 -0.42 0.64 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -35.48 363.95 -9.47 -44.95 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.01 Total: 0.52 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -3.40 Total: 6.04 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -0.60 Total: -64.68 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.48 -9.47 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081733577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.299 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds