Wall clock time and date at job start Tue Mar 31 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21277 * 120.00178 * 2 1 4 4 N 1.34775 * 119.99696 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00461 * 359.97438 * 4 2 1 6 6 C 1.53000 * 109.47208 * 89.99691 * 5 4 2 7 7 C 1.50697 * 109.47330 * 180.02562 * 6 5 4 8 8 C 1.38234 * 120.00080 * 90.00083 * 7 6 5 9 9 C 1.38237 * 120.00154 * 179.97438 * 8 7 6 10 10 C 1.38237 * 119.99658 * 359.97438 * 9 8 7 11 11 C 1.38231 * 120.00296 * 0.28412 * 10 9 8 12 12 C 1.38232 * 119.99928 * 269.98318 * 7 6 5 13 13 C 1.46505 * 119.99643 * 180.02562 * 4 2 1 14 14 C 1.50700 * 109.47161 * 269.99781 * 13 4 2 15 15 O 1.21298 * 119.99945 * 0.02562 * 14 13 4 16 16 N 1.34773 * 120.00440 * 180.02562 * 14 13 4 17 17 C 1.37093 * 120.00604 * 180.02562 * 16 14 13 18 18 H 1.08008 * 119.99729 * 17.71482 * 17 16 14 19 19 C 1.38950 * 120.00094 * 197.72025 * 17 16 14 20 20 N 1.31405 * 120.00060 * 21.41577 * 19 17 16 21 21 Si 1.86798 * 119.99710 * 201.41198 * 19 17 16 22 22 H 1.48495 * 109.47457 * 359.97438 * 21 19 17 23 23 H 1.48508 * 109.46886 * 120.00286 * 21 19 17 24 24 H 1.48506 * 109.47010 * 239.99695 * 21 19 17 25 25 C 1.46506 * 119.99465 * 359.97438 * 16 14 13 26 26 C 1.47197 * 109.47154 * 84.23590 * 25 16 14 27 27 N 6.41639 * 145.61580 * 175.76439 * 2 1 3 28 28 H 1.09003 * 109.47063 * 270.00056 * 1 2 3 29 29 H 1.09009 * 109.47195 * 29.99934 * 1 2 3 30 30 H 1.08997 * 109.47210 * 149.99518 * 1 2 3 31 31 H 1.09006 * 109.46535 * 330.00311 * 5 4 2 32 32 H 1.08991 * 109.47258 * 210.00274 * 5 4 2 33 33 H 1.09001 * 109.46678 * 60.00109 * 6 5 4 34 34 H 1.09002 * 109.47017 * 300.00638 * 6 5 4 35 35 H 1.08004 * 119.99984 * 359.97438 * 8 7 6 36 36 H 1.07992 * 120.00040 * 180.02562 * 9 8 7 37 37 H 1.08001 * 119.99675 * 180.02562 * 10 9 8 38 38 H 1.07996 * 120.00263 * 179.72350 * 11 10 9 39 39 H 1.08001 * 120.00210 * 359.97438 * 12 7 6 40 40 H 1.08993 * 109.47363 * 29.99658 * 13 4 2 41 41 H 1.08997 * 109.46961 * 150.00052 * 13 4 2 42 42 H 0.97002 * 120.00055 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46913 * 204.23307 * 25 16 14 44 44 H 1.09000 * 109.46983 * 324.23236 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 1.4483 -2.4359 -0.0005 6 6 1.1927 -2.8773 -1.4430 7 6 0.4387 -4.1821 -1.4430 8 6 -0.9436 -4.1815 -1.4427 9 6 -1.6353 -5.3784 -1.4432 10 6 -0.9445 -6.5758 -1.4447 11 6 0.4378 -6.5764 -1.4397 12 6 1.1294 -5.3794 -1.4438 13 6 3.6458 -1.1672 0.0000 14 6 4.1487 -1.1663 -1.4206 15 8 3.3609 -1.1653 -2.3428 16 7 5.4739 -1.1667 -1.6664 17 6 5.9314 -1.1653 -2.9588 18 1 5.2718 -0.8794 -3.7648 19 6 7.2436 -1.5319 -3.2316 20 7 7.9140 -2.2635 -2.3702 21 14 8.0545 -0.9847 -4.8230 22 1 7.0934 -0.1770 -5.6161 23 1 9.2525 -0.1643 -4.5114 24 1 8.4621 -2.1784 -5.6067 25 6 6.4254 -1.1674 -0.5525 26 6 6.6377 -2.5483 -0.0893 27 7 6.8022 -3.6137 0.2676 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8901 -0.5139 30 1 -0.3633 -0.8899 -0.5139 31 1 0.4961 -2.3056 0.5137 32 1 2.0376 -3.1956 0.5129 33 1 2.1450 -3.0075 -1.9572 34 1 0.6035 -2.1175 -1.9564 35 1 -1.4833 -3.2460 -1.4419 36 1 -2.7152 -5.3780 -1.4433 37 1 -1.4849 -7.5109 -1.4456 38 1 0.9774 -7.5119 -1.4363 39 1 2.2094 -5.3799 -1.4448 40 1 4.0090 -0.2776 0.5145 41 1 4.0090 -2.0575 0.5134 42 1 8.8302 -2.5191 -2.5605 43 1 7.3741 -0.7457 -0.8848 44 1 6.0276 -0.5668 0.2656 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090500131.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:13 Heat of formation + Delta-G solvation = -1.715423 kcal Electronic energy + Delta-G solvation = -28244.610908 eV Core-core repulsion = 24355.850318 eV Total energy + Delta-G solvation = -3888.760590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.04682 -39.13719 -38.39744 -36.04611 -35.49714 -34.31582 -32.85641 -31.89850 -30.88875 -30.37829 -28.59428 -27.57955 -26.74211 -24.37091 -23.73737 -22.55660 -20.95058 -19.99484 -18.62116 -17.93704 -17.03947 -16.79856 -16.58233 -16.14887 -15.96492 -15.18716 -15.12254 -14.87271 -14.46414 -14.10711 -13.76317 -13.55512 -13.40001 -13.28880 -13.11248 -13.02347 -12.71204 -12.64674 -12.38553 -12.16995 -12.06009 -11.81271 -11.71277 -11.53704 -11.35530 -11.20305 -11.14452 -10.90860 -10.64364 -10.59754 -10.37508 -10.31069 -9.60811 -9.27360 -9.19685 -8.92209 -8.63130 -8.15622 -8.04412 -6.52262 -4.00710 1.35226 1.40049 2.83397 3.07841 3.18044 3.22879 3.29666 3.54275 3.75049 3.79846 3.92173 4.11057 4.69259 4.77241 4.84962 4.88962 4.94404 5.00044 5.05102 5.14438 5.17708 5.27906 5.36236 5.43534 5.48621 5.54075 5.55329 5.60063 5.66900 5.75915 5.83715 5.92159 5.99778 6.08364 6.11448 6.45432 6.47803 6.51300 6.51501 6.63374 6.75326 7.02768 7.45698 7.60219 7.87518 8.26234 8.42579 8.67469 8.99157 9.17931 9.71397 10.53733 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.003973 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.445584 B = 7045.075429 C = 8145.728895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.518 3.482 3 O -0.545 6.545 4 N -0.591 5.591 5 C 0.121 3.879 6 C -0.102 4.102 7 C -0.073 4.073 8 C -0.120 4.120 9 C -0.122 4.122 10 C -0.130 4.130 11 C -0.118 4.118 12 C -0.113 4.113 13 C 0.097 3.903 14 C 0.443 3.557 15 O -0.559 6.559 16 N -0.442 5.442 17 C -0.309 4.309 18 H 0.108 0.892 19 C 0.032 3.968 20 N -0.878 5.878 21 Si 0.925 3.075 22 H -0.267 1.267 23 H -0.279 1.279 24 H -0.283 1.283 25 C 0.218 3.782 26 C 0.246 3.754 27 N -0.472 5.472 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.272 0.728 43 H 0.129 0.871 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 -2.328 6.637 15.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.307 3.693 3 O -0.422 6.422 4 N -0.322 5.322 5 C -0.002 4.002 6 C -0.140 4.140 7 C -0.073 4.073 8 C -0.138 4.138 9 C -0.140 4.140 10 C -0.148 4.148 11 C -0.136 4.136 12 C -0.131 4.131 13 C -0.030 4.030 14 C 0.230 3.770 15 O -0.441 6.441 16 N -0.163 5.163 17 C -0.436 4.436 18 H 0.126 0.874 19 C -0.171 4.171 20 N -0.517 5.517 21 Si 0.751 3.249 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.209 1.209 25 C 0.090 3.910 26 C -0.073 4.073 27 N -0.152 5.152 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.147 0.853 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.712 -3.394 6.702 15.635 hybrid contribution 0.712 0.228 -1.069 1.304 sum -13.000 -3.167 5.633 14.517 Atomic orbital electron populations 1.21955 0.92242 1.04913 1.04178 1.20651 0.90417 0.83035 0.75210 1.90697 1.70694 1.31055 1.49724 1.47522 1.05652 1.06126 1.72943 1.21575 0.96846 0.85192 0.96569 1.21165 1.02278 0.93146 0.97456 1.19989 0.93662 0.95248 0.98422 1.21069 0.93704 0.98026 1.00978 1.21099 0.99592 0.92626 1.00667 1.21101 0.94422 0.97911 1.01396 1.21163 0.94380 0.98040 1.00048 1.21201 1.00320 0.92013 0.99571 1.21385 0.80590 1.03934 0.97063 1.20492 0.82853 0.83019 0.90625 1.90523 1.54329 1.53547 1.45701 1.43620 1.02856 1.64118 1.05711 1.19730 0.96137 1.43985 0.83773 0.87445 1.25247 0.97302 0.95108 0.99468 1.69854 1.12204 1.32213 1.37424 0.85884 0.79073 0.78598 0.81316 1.19129 1.20430 1.20944 1.18766 0.97908 0.85195 0.89111 1.29317 0.91901 0.95487 0.90576 1.80883 1.09802 1.11820 1.12689 0.89233 0.89094 0.90007 0.90221 0.90399 0.88342 0.90532 0.86193 0.86378 0.86487 0.86254 0.85893 0.87965 0.89143 0.91704 0.85347 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 9.29 36.01 0.33 -1.55 16 2 C 0.52 8.32 7.78 -10.99 -0.09 8.23 16 3 O -0.54 -10.97 16.68 5.56 0.09 -10.87 16 4 N -0.59 -9.18 2.02 -175.07 -0.35 -9.53 16 5 C 0.12 1.54 5.02 -4.04 -0.02 1.52 16 6 C -0.10 -1.46 4.76 -27.88 -0.13 -1.60 16 7 C -0.07 -0.93 5.13 -104.63 -0.54 -1.47 16 8 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 9 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 10 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 11 C -0.12 -1.37 10.05 -39.58 -0.40 -1.76 16 12 C -0.11 -1.49 9.70 -39.58 -0.38 -1.88 16 13 C 0.10 1.67 4.54 -5.19 -0.02 1.65 16 14 C 0.44 9.72 7.54 -10.99 -0.08 9.64 16 15 O -0.56 -13.83 13.68 5.54 0.08 -13.75 16 16 N -0.44 -10.08 2.60 -117.93 -0.31 -10.38 16 17 C -0.31 -7.85 9.32 -14.94 -0.14 -7.99 16 18 H 0.11 2.92 7.39 -52.48 -0.39 2.54 16 19 C 0.03 0.78 4.86 -17.47 -0.08 0.70 16 20 N -0.88 -21.75 9.48 55.50 0.53 -21.22 16 21 Si 0.92 19.63 29.60 -169.99 -5.03 14.60 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.22 4.23 4.91 -6.83 -0.03 4.19 16 26 C 0.25 5.18 12.95 -20.78 -0.27 4.91 16 27 N -0.47 -10.69 18.53 42.14 0.78 -9.91 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.08 0.77 5.68 -51.93 -0.29 0.47 16 31 H 0.08 0.78 6.53 -51.93 -0.34 0.44 16 32 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 33 H 0.10 1.81 6.34 -51.93 -0.33 1.49 16 34 H 0.08 1.11 7.27 -51.93 -0.38 0.73 16 35 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.10 1.69 6.69 -51.93 -0.35 1.34 16 41 H 0.09 1.42 7.26 -51.93 -0.38 1.05 16 42 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 43 H 0.13 2.58 6.46 -51.93 -0.34 2.25 16 44 H 0.08 1.26 6.68 -51.93 -0.35 0.91 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -32.55 372.66 -7.28 -39.83 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.64 Total: 6.10 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -3.04 Total: 9.52 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: 0.65 Total: -51.04 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.17 Total: -24.63 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.03 Total: 14.60 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.55 -7.28 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090500131.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.111 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds