Wall clock time and date at job start Tue Mar 31 2020 04:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00425 * 2 1 4 4 H 1.48496 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47056 * 300.00461 * 3 2 1 6 6 H 1.48497 * 109.46935 * 59.99867 * 3 2 1 7 7 C 1.37877 * 119.99591 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46999 * 180.02562 * 9 7 2 11 11 N 1.46899 * 109.47309 * 180.02562 * 10 9 7 12 12 C 1.47025 * 110.99757 * 293.95800 * 11 10 9 13 13 C 1.53092 * 109.25679 * 177.60896 * 12 11 10 14 14 O 1.43009 * 109.26459 * 56.84240 * 13 12 11 15 15 C 1.43015 * 113.74185 * 301.33210 * 14 13 12 16 16 H 1.09001 * 109.50396 * 298.69297 * 15 14 13 17 17 C 1.50696 * 109.51071 * 178.60367 * 15 14 13 18 18 N 1.30042 * 126.18346 * 314.97490 * 17 15 14 19 19 O 1.21292 * 110.48102 * 180.02562 * 18 17 15 20 20 C 1.34194 * 109.69180 * 359.97438 * 19 18 17 21 21 C 1.47824 * 126.67230 * 179.97438 * 20 19 18 22 22 C 1.39576 * 120.14170 * 0.02562 * 21 20 19 23 23 C 1.37956 * 119.84932 * 179.71860 * 22 21 20 24 24 C 1.38362 * 120.14721 * 0.26436 * 23 22 21 25 25 C 1.38359 * 120.29250 * 0.02562 * 24 23 22 26 26 C 1.37961 * 120.14522 * 0.02562 * 25 24 23 27 27 N 1.32119 * 106.65346 * 0.23231 * 20 19 18 28 28 C 1.47004 * 111.00307 * 170.32183 * 11 10 9 29 29 H 0.97001 * 119.99472 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.47078 * 59.99935 * 9 7 2 31 31 H 1.09003 * 109.46935 * 299.99998 * 9 7 2 32 32 H 1.09005 * 109.47203 * 60.00161 * 10 9 7 33 33 H 1.08997 * 109.47432 * 300.00159 * 10 9 7 34 34 H 1.08990 * 109.51077 * 57.66702 * 12 11 10 35 35 H 1.09002 * 109.53746 * 297.55725 * 12 11 10 36 36 H 1.09002 * 109.50436 * 296.90636 * 13 12 11 37 37 H 1.09005 * 109.50909 * 176.78112 * 13 12 11 38 38 H 1.08002 * 120.07892 * 0.02562 * 22 21 20 39 39 H 1.08008 * 119.92898 * 180.27682 * 23 22 21 40 40 H 1.08003 * 119.85172 * 180.02562 * 24 23 22 41 41 H 1.07993 * 119.92787 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.07175 * 180.02562 * 26 25 24 43 43 H 1.08991 * 109.51084 * 62.45872 * 28 11 10 44 44 H 1.09002 * 109.50765 * 302.31845 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 0.7641 -5.1123 1.2529 13 6 -0.0319 -6.4182 1.1857 14 8 0.8632 -7.5038 0.9297 15 6 1.6061 -7.3635 -0.2842 16 1 0.9188 -7.3290 -1.1296 17 6 2.5392 -8.5363 -0.4417 18 7 3.2969 -9.0444 0.4850 19 8 3.9319 -9.9808 0.0480 20 6 3.6294 -10.1677 -1.2460 21 6 4.1857 -11.2034 -2.1421 22 6 5.1266 -12.1150 -1.6604 23 6 5.6375 -13.0828 -2.5004 24 6 5.2233 -13.1476 -3.8190 25 6 4.2954 -12.2432 -4.3043 26 6 3.7774 -11.2698 -3.4752 27 7 2.7419 -9.2424 -1.5648 28 6 2.4188 -6.0670 -0.2319 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8902 31 1 0.6245 -2.5571 0.8897 32 1 2.8717 -3.6044 0.8895 33 1 2.8718 -3.6044 -0.8905 34 1 0.0795 -4.2754 1.3909 35 1 1.4615 -5.1538 2.0896 36 1 -0.7669 -6.3556 0.3831 37 1 -0.5419 -6.5830 2.1349 38 1 5.4502 -12.0660 -0.6312 39 1 6.3622 -13.7917 -2.1279 40 1 5.6261 -13.9075 -4.4723 41 1 3.9760 -12.2995 -5.3344 42 1 3.0530 -10.5648 -3.8551 43 1 3.1431 -6.1241 0.5805 44 1 2.9421 -5.9271 -1.1778 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096000274.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:47:43 Heat of formation + Delta-G solvation = 59.305768 kcal Electronic energy + Delta-G solvation = -26736.809147 eV Core-core repulsion = 22850.694634 eV Total energy + Delta-G solvation = -3886.114513 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.74999 -39.63016 -39.54742 -36.25763 -35.76505 -33.81524 -33.02077 -31.59163 -31.29984 -30.31102 -30.02739 -27.12180 -25.08330 -24.90437 -23.73660 -23.49870 -22.58064 -21.80336 -20.46926 -19.91785 -18.44039 -18.27944 -17.10369 -16.69875 -16.37849 -15.99815 -15.81012 -15.31290 -15.06484 -14.87999 -14.64160 -14.35998 -14.16541 -13.96364 -13.53072 -13.51413 -13.13065 -12.78503 -12.38419 -12.22011 -12.05914 -11.98893 -11.65938 -11.60087 -11.41257 -11.21807 -11.17558 -10.95820 -10.79543 -10.58647 -10.49487 -9.96294 -9.74837 -9.50768 -9.32213 -9.16106 -9.08273 -8.36985 -7.93571 -6.03148 -4.05575 0.07522 0.86094 1.34730 2.03463 2.41526 2.98400 3.28612 3.29405 3.36920 3.40943 3.77673 3.94816 4.26111 4.41250 4.42834 4.47380 4.57370 4.74031 4.84975 4.89440 4.97240 5.12585 5.21380 5.25480 5.32830 5.36585 5.43832 5.49112 5.52487 5.65018 5.70346 5.84313 5.87562 5.91789 5.95494 6.03718 6.14288 6.25987 6.33845 6.38713 6.86727 7.03958 7.30079 7.37347 7.70522 7.82352 7.94982 8.01625 8.38563 9.01264 9.58330 11.08227 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020544 B = 0.002075 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.620103 B =13493.482244 C =14206.747531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.533 5.533 12 C 0.014 3.986 13 C 0.067 3.933 14 O -0.380 6.380 15 C 0.188 3.812 16 H 0.101 0.899 17 C 0.186 3.814 18 N -0.355 5.355 19 O 0.089 5.911 20 C 0.217 3.783 21 C -0.028 4.028 22 C -0.080 4.080 23 C -0.123 4.123 24 C -0.093 4.093 25 C -0.123 4.123 26 C -0.063 4.063 27 N -0.460 5.460 28 C 0.032 3.968 29 H 0.260 0.740 30 H 0.026 0.974 31 H 0.018 0.982 32 H 0.023 0.977 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.042 0.958 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.167 -28.528 -5.606 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.258 5.258 12 C -0.114 4.114 13 C -0.009 4.009 14 O -0.298 6.298 15 C 0.128 3.872 16 H 0.119 0.881 17 C -0.087 4.087 18 N -0.059 5.059 19 O 0.026 5.974 20 C 0.000 4.000 21 C -0.030 4.030 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.112 4.112 25 C -0.141 4.141 26 C -0.082 4.082 27 N -0.194 5.194 28 C -0.098 4.098 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.082 0.918 34 H 0.121 0.879 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.152 0.848 42 H 0.159 0.841 43 H 0.060 0.940 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.390 -27.930 -5.266 29.367 hybrid contribution 1.092 1.103 0.532 1.641 sum 8.483 -26.827 -4.735 28.532 Atomic orbital electron populations 1.69977 1.06007 1.26535 1.50625 1.24993 0.94860 0.99227 0.95247 0.86525 0.80075 0.83727 0.77604 1.19784 1.20944 1.21009 1.21205 0.93039 0.90954 1.50918 0.92719 1.19106 0.93926 0.89978 0.97895 1.22393 0.96888 0.87662 0.99330 1.62343 1.27126 1.02287 1.34083 1.22852 0.98633 0.98837 0.91088 1.22805 0.91193 0.84947 1.01960 1.87946 1.56662 1.45130 1.40041 1.20004 0.90460 0.86817 0.89919 0.88132 1.25236 0.98996 0.99774 0.84744 1.74701 1.08526 1.00595 1.22078 1.85430 1.50211 1.37541 1.24268 1.26363 0.93558 0.95960 0.84148 1.17237 1.00098 0.93957 0.91695 1.21315 0.94499 0.93445 1.00694 1.21116 1.00569 0.98619 0.93765 1.21458 0.95937 0.98140 0.95690 1.21169 0.97552 0.95064 1.00294 1.21305 0.98123 0.97687 0.91132 1.72019 1.15501 1.05852 1.26031 1.22637 0.94667 0.90269 1.02251 0.93007 0.95535 0.96409 0.95850 0.91783 0.87927 0.94238 0.91713 0.87991 0.84598 0.84901 0.85250 0.84805 0.84150 0.94000 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.03 0.73 4.90 -27.88 -0.14 0.59 16 10 C 0.06 1.36 4.89 -3.83 -0.02 1.34 16 11 N -0.53 -9.96 4.73 -234.31 -1.11 -11.07 16 12 C 0.01 0.24 5.43 -3.71 -0.02 0.22 16 13 C 0.07 0.97 7.01 37.20 0.26 1.24 16 14 O -0.38 -6.14 10.45 -35.23 -0.37 -6.51 16 15 C 0.19 2.93 3.36 -27.83 -0.09 2.84 16 16 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 17 C 0.19 2.85 7.09 -156.56 -1.11 1.74 16 18 N -0.36 -5.50 12.15 31.19 0.38 -5.12 16 19 O 0.09 1.15 11.14 16.67 0.19 1.34 16 20 C 0.22 2.58 8.01 -13.85 -0.11 2.47 16 21 C -0.03 -0.25 5.87 -104.98 -0.62 -0.86 16 22 C -0.08 -0.53 9.73 -39.19 -0.38 -0.91 16 23 C -0.12 -0.61 10.03 -39.64 -0.40 -1.01 16 24 C -0.09 -0.44 10.04 -39.49 -0.40 -0.83 16 25 C -0.12 -0.68 10.03 -39.64 -0.40 -1.08 16 26 C -0.06 -0.48 9.71 -39.18 -0.38 -0.86 16 27 N -0.46 -6.41 11.26 -10.16 -0.11 -6.52 16 28 C 0.03 0.52 4.91 -3.71 -0.02 0.51 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.02 0.48 6.51 -51.93 -0.34 0.14 16 32 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 34 H 0.10 1.86 6.37 -51.93 -0.33 1.53 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.14 0.74 7.95 -52.49 -0.42 0.32 16 39 H 0.13 0.36 8.06 -52.48 -0.42 -0.07 16 40 H 0.13 0.30 8.06 -52.48 -0.42 -0.12 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 1.10 7.88 -52.49 -0.41 0.69 16 43 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.38 8.09 -51.93 -0.42 0.96 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -32.75 371.50 -10.05 -42.80 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -6.11 Total: -3.09 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -4.23 Total: -8.14 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.11 Total: -48.65 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -0.18 Total: -5.17 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.75 -10.05 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096000274.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.103 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds