Wall clock time and date at job start Tue Mar 31 2020 04:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48496 * 109.47164 * 269.99837 * 3 2 1 5 5 H 1.48501 * 109.47024 * 30.00336 * 3 2 1 6 6 H 1.48507 * 109.46859 * 150.00308 * 3 2 1 7 7 C 1.40044 * 120.00238 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.46378 * 119.99990 * 0.02562 * 7 2 1 10 10 O 1.21690 * 119.99668 * 359.97438 * 9 7 2 11 11 N 1.34769 * 120.00069 * 180.02562 * 9 7 2 12 12 C 1.48556 * 125.17863 * 358.92370 * 11 9 7 13 13 C 1.55158 * 104.41252 * 203.42602 * 12 11 9 14 14 H 1.09002 * 111.65891 * 205.64177 * 13 12 11 15 15 C 1.49806 * 108.20300 * 82.63536 * 13 12 11 16 16 O 1.21280 * 117.54912 * 61.77743 * 15 13 12 17 17 N 1.33124 * 124.89829 * 241.76242 * 15 13 12 18 18 C 1.46497 * 118.36656 * 180.33411 * 17 15 13 19 19 C 1.50698 * 109.47405 * 89.99556 * 18 17 15 20 20 C 1.38650 * 120.78782 * 269.72040 * 19 18 17 21 21 C 1.38209 * 119.15750 * 179.75188 * 20 19 18 22 22 N 1.31866 * 120.76477 * 0.53717 * 21 20 19 23 23 C 1.31869 * 121.72740 * 359.73204 * 22 21 20 24 24 C 1.38204 * 120.76347 * 359.97438 * 23 22 21 25 25 C 1.45924 * 123.26413 * 0.30780 * 17 15 13 26 26 C 1.52829 * 109.62313 * 336.23930 * 25 17 15 27 27 C 1.50738 * 110.44431 * 53.69231 * 26 25 17 28 28 H 1.09003 * 110.33118 * 175.35414 * 27 26 25 29 29 C 1.47123 * 125.67258 * 180.02562 * 11 9 7 30 30 H 0.97002 * 119.99697 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.89625 * 85.08802 * 12 11 9 32 32 H 1.09000 * 111.31862 * 322.47307 * 12 11 9 33 33 H 1.08997 * 109.46972 * 209.99676 * 18 17 15 34 34 H 1.09002 * 109.46804 * 329.99478 * 18 17 15 35 35 H 1.08001 * 120.42234 * 359.97438 * 20 19 18 36 36 H 1.08005 * 119.61414 * 180.29302 * 21 20 19 37 37 H 1.08004 * 119.62067 * 180.02562 * 23 22 21 38 38 H 1.08004 * 120.42199 * 180.02562 * 24 23 22 39 39 H 1.08999 * 109.44926 * 96.28813 * 25 17 15 40 40 H 1.08997 * 109.44806 * 216.19800 * 25 17 15 41 41 H 1.08996 * 109.41158 * 174.40417 * 26 25 17 42 42 H 1.09002 * 109.40884 * 294.17360 * 26 25 17 43 43 H 1.09001 * 109.90677 * 58.80216 * 29 11 9 44 44 H 1.09006 * 109.89816 * 297.56127 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0465 -1.4000 5 1 1.4381 2.6527 0.7001 6 1 3.5384 1.4402 0.7000 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0583 -2.4805 -0.0017 11 7 1.9491 -3.6476 -0.0017 12 6 3.4284 -3.7817 -0.0234 13 6 3.6794 -5.1952 -0.6122 14 1 4.6360 -5.6030 -0.2856 15 6 3.6057 -5.1000 -2.1054 16 8 4.4129 -4.3866 -2.6625 17 7 2.7207 -5.7399 -2.8666 18 6 2.7831 -5.5482 -4.3176 19 6 3.6942 -6.5849 -4.9226 20 6 5.0495 -6.3359 -5.0758 21 6 5.8552 -7.3126 -5.6301 22 7 5.3467 -8.4650 -6.0204 23 6 4.0618 -8.7341 -5.8950 24 6 3.1961 -7.8082 -5.3443 25 6 1.6918 -6.6233 -2.3276 26 6 2.1315 -7.1497 -0.9618 27 6 2.4947 -6.0066 -0.0489 28 1 2.7289 -6.3782 0.9487 29 6 1.3430 -4.9882 -0.0033 30 1 -0.4850 0.8401 0.0004 31 1 3.8215 -3.7187 0.9912 32 1 3.8860 -3.0211 -0.6559 33 1 1.7840 -5.6510 -4.7410 34 1 3.1696 -4.5527 -4.5362 35 1 5.4710 -5.3922 -4.7627 36 1 6.9128 -7.1284 -5.7485 37 1 3.6817 -9.6894 -6.2258 38 1 2.1449 -8.0345 -5.2439 39 1 0.7586 -6.0704 -2.2201 40 1 1.5403 -7.4614 -3.0078 41 1 1.3209 -7.7281 -0.5185 42 1 3.0060 -7.7888 -1.0843 43 1 0.7074 -5.1071 -0.8808 44 1 0.7570 -5.1315 0.9046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096082031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:33 Heat of formation + Delta-G solvation = -20.582787 kcal Electronic energy + Delta-G solvation = -28778.231313 eV Core-core repulsion = 24888.652572 eV Total energy + Delta-G solvation = -3889.578741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19088 -40.10887 -37.96037 -36.50793 -35.73994 -33.50082 -32.50911 -31.69516 -31.35373 -29.91086 -28.16703 -26.85712 -26.14638 -24.26076 -23.56321 -22.99501 -21.97691 -21.04742 -19.37066 -17.98034 -17.10329 -16.90428 -16.68395 -16.55823 -16.10907 -15.74184 -15.55251 -15.29535 -14.68857 -14.44154 -13.89593 -13.84539 -13.82216 -13.75240 -13.28513 -13.18018 -12.81301 -12.66359 -12.47231 -12.01592 -11.83184 -11.55423 -11.50012 -11.39908 -11.18225 -11.05594 -10.84303 -10.77343 -10.55559 -10.28225 -10.15331 -9.99696 -9.72585 -9.35963 -9.28927 -8.86452 -8.68851 -7.68021 -7.26384 -6.21946 -4.65773 0.96981 1.03001 2.82901 3.03251 3.14456 3.21178 3.24771 3.72712 4.06807 4.29084 4.42831 4.44683 4.48237 4.51136 4.55627 4.61935 4.68374 4.79594 4.92043 5.01870 5.16707 5.19785 5.25894 5.35918 5.44378 5.49455 5.63180 5.66825 5.70158 5.72070 5.75662 5.80833 5.83949 6.02292 6.18719 6.24387 6.36371 6.37158 6.46914 6.53210 6.54972 7.25625 7.42911 7.49583 7.79412 8.08381 8.31751 8.37859 9.00779 9.41701 10.54539 10.73438 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.003472 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.899787 B = 8062.987417 C = 8774.540576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.070 0.930 9 C 0.572 3.428 10 O -0.576 6.576 11 N -0.646 5.646 12 C 0.134 3.866 13 C -0.113 4.113 14 H 0.117 0.883 15 C 0.536 3.464 16 O -0.549 6.549 17 N -0.594 5.594 18 C 0.146 3.854 19 C -0.055 4.055 20 C -0.146 4.146 21 C 0.093 3.907 22 N -0.488 5.488 23 C 0.091 3.909 24 C -0.163 4.163 25 C 0.108 3.892 26 C -0.123 4.123 27 C -0.101 4.101 28 H 0.092 0.908 29 C 0.115 3.885 30 H 0.268 0.732 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.947 -16.937 -6.909 19.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.088 0.912 9 C 0.379 3.621 10 O -0.459 6.459 11 N -0.387 5.387 12 C 0.010 3.990 13 C -0.135 4.135 14 H 0.135 0.865 15 C 0.325 3.675 16 O -0.427 6.427 17 N -0.326 5.326 18 C 0.023 3.977 19 C -0.064 4.064 20 C -0.167 4.167 21 C -0.064 4.064 22 N -0.197 5.197 23 C -0.066 4.066 24 C -0.183 4.183 25 C -0.015 4.015 26 C -0.161 4.161 27 C -0.120 4.120 28 H 0.110 0.890 29 C -0.008 4.008 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.171 0.829 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.982 -16.974 -7.516 19.833 hybrid contribution -0.136 1.272 0.435 1.351 sum 6.846 -15.702 -7.081 18.536 Atomic orbital electron populations 1.70022 1.07061 1.27326 1.35311 1.25724 0.94639 1.00339 0.92557 0.86367 0.80211 0.81271 0.78945 1.19671 1.20420 1.18775 1.20900 0.93648 0.88958 1.53855 0.91220 1.18029 0.86625 0.81170 0.76274 1.90608 1.13864 1.85864 1.55556 1.49040 1.04312 1.04573 1.80811 1.22119 0.84444 0.92773 0.99690 1.22320 1.00332 0.99598 0.91255 0.86528 1.19756 0.79836 0.78385 0.89520 1.90655 1.40063 1.39046 1.72910 1.47174 1.32822 1.46908 1.05724 1.20375 0.98640 0.98432 0.80206 1.20718 0.95043 0.95358 0.95317 1.22304 0.93893 1.01579 0.98882 1.22786 1.00360 0.88800 0.94412 1.67651 1.14621 1.20905 1.16527 1.22705 0.88960 0.99086 0.95826 1.22071 1.01372 0.94271 1.00591 1.21596 0.91425 0.93340 0.95139 1.21276 1.02546 0.97859 0.94396 1.21630 0.95306 0.95208 0.99856 0.88988 1.21679 0.94388 0.83802 1.00961 0.92088 0.92139 0.89713 0.89307 0.87970 0.83924 0.82826 0.82949 0.84965 0.90510 0.90654 0.89427 0.91172 0.92536 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.10 11.83 55.55 0.66 -22.45 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.46 29.56 -169.99 -5.02 15.44 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.54 -15.36 8.99 -35.63 -0.32 -15.68 16 8 H 0.07 1.86 6.65 -52.49 -0.35 1.51 16 9 C 0.57 16.41 7.78 -12.99 -0.10 16.31 16 10 O -0.58 -18.72 15.35 5.20 0.08 -18.64 16 11 N -0.65 -14.56 3.32 -171.34 -0.57 -15.13 16 12 C 0.13 2.50 5.89 -1.76 -0.01 2.49 16 13 C -0.11 -1.65 3.47 -90.41 -0.31 -1.96 16 14 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 15 C 0.54 8.59 6.52 -12.15 -0.08 8.52 16 16 O -0.55 -10.27 14.71 5.56 0.08 -10.18 16 17 N -0.59 -7.96 2.78 -176.49 -0.49 -8.46 16 18 C 0.15 1.78 5.38 -5.20 -0.03 1.75 16 19 C -0.05 -0.61 5.49 -104.32 -0.57 -1.19 16 20 C -0.15 -1.72 9.64 -39.44 -0.38 -2.10 16 21 C 0.09 1.03 11.18 -17.55 -0.20 0.83 16 22 N -0.49 -5.69 10.36 -13.25 -0.14 -5.83 16 23 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 24 C -0.16 -1.51 9.75 -39.44 -0.38 -1.90 16 25 C 0.11 1.15 5.89 -4.44 -0.03 1.12 16 26 C -0.12 -1.19 5.46 -27.95 -0.15 -1.34 16 27 C -0.10 -1.28 3.26 -90.69 -0.30 -1.58 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 C 0.12 2.07 6.08 -3.28 -0.02 2.05 16 30 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.76 6.63 -51.93 -0.34 1.42 16 33 H 0.09 0.89 7.99 -51.93 -0.41 0.48 16 34 H 0.10 1.46 7.12 -51.93 -0.37 1.09 16 35 H 0.14 1.80 7.40 -52.49 -0.39 1.41 16 36 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 37 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.13 0.90 8.01 -52.48 -0.42 0.48 16 39 H 0.08 0.93 6.10 -51.93 -0.32 0.61 16 40 H 0.08 0.60 7.96 -51.93 -0.41 0.19 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 1.04 5.35 -51.93 -0.28 0.76 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -37.51 357.17 -9.00 -46.51 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -5.81 Total: 2.99 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: -3.17 Total: 10.36 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.54 Total: -51.86 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: 0.16 Total: -28.82 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.51 -9.00 -46.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096082031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.931 kcal (2) G-P(sol) polarization free energy of solvation -37.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds