Wall clock time and date at job start Tue Mar 31 2020 04:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86794 * 119.99680 * 2 1 4 4 H 1.48499 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47244 * 299.99818 * 3 2 1 6 6 H 1.48503 * 109.47707 * 59.99480 * 3 2 1 7 7 C 1.40050 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.46364 * 120.00151 * 0.02562 * 7 2 1 10 10 O 1.21688 * 120.00461 * 359.97438 * 9 7 2 11 11 N 1.34776 * 120.00213 * 179.97438 * 9 7 2 12 12 C 1.48843 * 125.82201 * 179.97438 * 11 9 7 13 13 C 1.52812 * 103.26309 * 204.56084 * 12 11 9 14 14 H 1.09000 * 111.29619 * 75.20250 * 13 12 11 15 15 C 1.51465 * 117.82165 * 204.26929 * 13 12 11 16 16 C 1.53677 * 106.95563 * 179.76997 * 15 13 12 17 17 N 1.45481 * 113.23993 * 320.85293 * 16 15 13 18 18 C 1.46502 * 116.97027 * 188.04460 * 17 16 15 19 19 C 1.50701 * 109.47274 * 269.88757 * 18 17 16 20 20 C 1.38651 * 120.78472 * 269.72111 * 19 18 17 21 21 C 1.38210 * 119.15480 * 179.75776 * 20 19 18 22 22 N 1.31867 * 120.76543 * 0.52518 * 21 20 19 23 23 C 1.31866 * 121.72778 * 359.74630 * 22 21 20 24 24 C 1.38207 * 120.76278 * 359.97438 * 23 22 21 25 25 C 1.34888 * 126.03670 * 7.92040 * 17 16 15 26 26 O 1.21285 * 120.75053 * 173.30942 * 25 17 16 27 27 C 1.48435 * 118.50224 * 353.28733 * 25 17 16 28 28 H 1.08995 * 108.99083 * 277.30728 * 27 25 17 29 29 C 1.48446 * 125.81776 * 0.03071 * 11 9 7 30 30 H 0.97001 * 120.00676 * 0.02562 * 1 2 3 31 31 H 1.09004 * 110.66078 * 86.12429 * 12 11 9 32 32 H 1.08997 * 110.66363 * 323.01051 * 12 11 9 33 33 H 1.09002 * 109.97317 * 299.15937 * 15 13 12 34 34 H 1.09002 * 109.97241 * 60.38513 * 15 13 12 35 35 H 1.08999 * 108.71849 * 81.73652 * 16 15 13 36 36 H 1.08998 * 108.71568 * 199.77465 * 16 15 13 37 37 H 1.09001 * 109.46826 * 29.88658 * 18 17 16 38 38 H 1.09002 * 109.46611 * 149.88455 * 18 17 16 39 39 H 1.07993 * 120.42608 * 359.97438 * 20 19 18 40 40 H 1.07995 * 119.61484 * 180.29300 * 21 20 19 41 41 H 1.08002 * 119.62136 * 180.02562 * 23 22 21 42 42 H 1.08003 * 120.41532 * 180.02562 * 24 23 22 43 43 H 1.09001 * 110.21812 * 64.61469 * 29 11 9 44 44 H 1.09011 * 110.27775 * 302.73549 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8818 2.3964 -1.2125 6 1 1.8818 2.3966 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2752 -2.4804 0.0005 10 8 0.0583 -2.4806 0.0005 11 7 1.9491 -3.6476 0.0005 12 6 1.3394 -5.0055 0.0011 13 6 2.4302 -5.8793 0.6191 14 1 2.4936 -5.7301 1.6970 15 6 2.4240 -7.3573 0.2882 16 6 3.6152 -7.9870 1.0273 17 7 4.8026 -7.1464 1.0233 18 6 6.0374 -7.7383 1.5441 19 6 6.1365 -7.4727 3.0243 20 6 6.7687 -6.3341 3.5001 21 6 6.8357 -6.1215 4.8642 22 7 6.3166 -6.9911 5.7087 23 6 5.7131 -8.0870 5.2921 24 6 5.6027 -8.3638 3.9425 25 6 4.8723 -5.8735 0.5824 26 8 5.8823 -5.2193 0.7336 27 6 3.6852 -5.2917 -0.0924 28 1 3.6869 -5.5969 -1.1388 29 6 3.4259 -3.7981 0.0012 30 1 -0.4851 0.8400 -0.0004 31 1 1.1186 -5.3283 -1.0164 32 1 0.4390 -5.0226 0.6150 33 1 1.4930 -7.8110 0.6280 34 1 2.5361 -7.4986 -0.7868 35 1 3.3252 -8.1763 2.0608 36 1 3.8567 -8.9389 0.5544 37 1 6.0272 -8.8139 1.3679 38 1 6.8946 -7.2951 1.0372 39 1 7.2001 -5.6207 2.8137 40 1 7.3222 -5.2348 5.2428 41 1 5.2995 -8.7759 6.0138 42 1 5.1068 -9.2629 3.6075 43 1 3.8447 -3.4003 0.9256 44 1 3.8582 -3.2861 -0.8586 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096082033.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:40 Heat of formation + Delta-G solvation = -20.045650 kcal Electronic energy + Delta-G solvation = -28251.922860 eV Core-core repulsion = 24362.367412 eV Total energy + Delta-G solvation = -3889.555449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.16527 -40.10828 -38.15327 -36.63085 -35.87549 -33.67371 -32.50017 -31.66508 -31.36519 -29.92346 -28.56512 -26.83043 -26.23176 -24.18954 -23.59601 -22.77681 -21.85067 -21.01413 -19.23937 -18.96584 -17.18376 -17.09400 -16.52126 -16.41794 -16.00177 -15.75105 -15.47288 -15.36787 -14.95196 -14.63640 -14.12325 -13.88432 -13.85237 -13.77051 -13.31992 -13.10259 -12.95323 -12.78468 -12.48967 -12.19960 -11.95802 -11.65681 -11.58479 -11.36648 -11.21447 -11.04345 -10.89122 -10.80092 -10.50699 -10.29012 -10.15309 -10.04623 -9.75094 -9.51206 -9.30573 -8.91078 -8.87034 -7.68043 -7.28525 -6.21676 -4.65800 0.94892 1.00665 2.51447 2.80543 3.13592 3.22159 3.27449 3.69221 4.04288 4.18354 4.29339 4.32999 4.39979 4.40936 4.50997 4.52935 4.63712 4.85882 4.88464 4.97184 5.10281 5.10982 5.20478 5.32722 5.37093 5.47668 5.49589 5.54455 5.62570 5.65520 5.73375 5.78778 5.85318 5.89020 6.11580 6.14721 6.28738 6.37758 6.48177 6.53478 6.55673 7.16162 7.24656 7.43585 7.80114 8.03924 8.07180 8.37781 9.01161 9.42523 10.54498 10.73463 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014076 B = 0.003322 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.681332 B = 8425.783326 C = 9372.340641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.537 4.537 8 H 0.071 0.929 9 C 0.572 3.428 10 O -0.575 6.575 11 N -0.649 5.649 12 C 0.126 3.874 13 C -0.105 4.105 14 H 0.085 0.915 15 C -0.117 4.117 16 C 0.120 3.880 17 N -0.610 5.610 18 C 0.145 3.855 19 C -0.062 4.062 20 C -0.145 4.145 21 C 0.096 3.904 22 N -0.485 5.485 23 C 0.092 3.908 24 C -0.163 4.163 25 C 0.546 3.454 26 O -0.528 6.528 27 C -0.134 4.134 28 H 0.107 0.893 29 C 0.151 3.849 30 H 0.268 0.732 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.710 -20.193 3.433 23.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.574 4.574 8 H 0.089 0.911 9 C 0.379 3.621 10 O -0.458 6.458 11 N -0.390 5.390 12 C 0.003 3.997 13 C -0.124 4.124 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.002 4.002 17 N -0.344 5.344 18 C 0.022 3.978 19 C -0.072 4.072 20 C -0.165 4.165 21 C -0.061 4.061 22 N -0.195 5.195 23 C -0.065 4.065 24 C -0.184 4.184 25 C 0.335 3.665 26 O -0.403 6.403 27 C -0.155 4.155 28 H 0.125 0.875 29 C 0.026 3.974 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.161 0.839 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.150 0.850 43 H 0.078 0.922 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.348 -19.447 4.363 22.935 hybrid contribution 0.406 0.487 -0.856 1.065 sum 11.754 -18.961 3.508 22.583 Atomic orbital electron populations 1.70027 1.07079 1.27284 1.35284 1.25733 0.94639 1.00367 0.92545 0.86308 0.80652 0.81590 0.78252 1.18603 1.20087 1.20096 1.20949 0.93742 0.88894 1.53787 0.91107 1.18050 0.86625 0.81114 0.76263 1.90613 1.13796 1.85681 1.55662 1.49497 1.03936 1.04543 1.81036 1.21476 0.95294 0.83955 0.99012 1.22093 0.95579 0.93976 1.00800 0.89697 1.21594 0.97627 0.95108 1.01175 1.21370 0.84841 0.93015 1.01017 1.47612 1.10314 1.13425 1.63045 1.20425 0.89096 0.99095 0.89171 1.20652 0.95588 0.94403 0.96516 1.22298 0.99306 0.97660 0.97248 1.22824 0.95852 0.97596 0.89810 1.67662 1.08694 1.03011 1.40085 1.22723 0.95482 0.94240 0.94074 1.22024 1.01304 1.00630 0.94394 1.19665 0.88980 0.80538 0.77349 1.90684 1.33688 1.59364 1.56576 1.21848 0.93525 0.99099 1.01072 0.87544 1.20866 0.84126 0.90468 1.01948 0.92095 0.93006 0.91133 0.89250 0.90400 0.91793 0.91076 0.89342 0.88512 0.83870 0.82700 0.82926 0.85040 0.92250 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.14 11.83 55.55 0.66 -22.48 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 3 Si 0.91 20.47 29.56 -169.99 -5.02 15.44 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -15.42 9.07 -35.64 -0.32 -15.75 16 8 H 0.07 1.90 7.16 -52.49 -0.38 1.53 16 9 C 0.57 16.55 7.80 -12.99 -0.10 16.45 16 10 O -0.58 -18.77 15.32 5.20 0.08 -18.69 16 11 N -0.65 -14.83 3.39 -172.61 -0.59 -15.41 16 12 C 0.13 2.27 6.61 -2.84 -0.02 2.25 16 13 C -0.10 -1.41 2.50 -90.01 -0.23 -1.64 16 14 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 15 C -0.12 -1.02 5.86 -27.16 -0.16 -1.18 16 16 C 0.12 0.91 6.18 -4.24 -0.03 0.88 16 17 N -0.61 -6.23 2.84 -176.35 -0.50 -6.73 16 18 C 0.15 1.27 5.33 -5.19 -0.03 1.24 16 19 C -0.06 -0.62 5.48 -104.32 -0.57 -1.19 16 20 C -0.14 -1.66 9.49 -39.44 -0.37 -2.04 16 21 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 22 N -0.49 -5.92 10.36 -13.25 -0.14 -6.05 16 23 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 24 C -0.16 -1.41 9.82 -39.44 -0.39 -1.79 16 25 C 0.55 7.55 7.18 -12.01 -0.09 7.46 16 26 O -0.53 -8.71 15.13 5.55 0.08 -8.62 16 27 C -0.13 -1.95 2.43 -91.94 -0.22 -2.17 16 28 H 0.11 1.40 7.88 -51.93 -0.41 0.99 16 29 C 0.15 2.89 5.66 -3.54 -0.02 2.87 16 30 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.37 8.07 -51.93 -0.42 0.95 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.62 7.87 -51.93 -0.41 0.21 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 37 H 0.09 0.50 7.89 -51.93 -0.41 0.09 16 38 H 0.10 0.93 7.29 -51.93 -0.38 0.55 16 39 H 0.14 1.73 7.19 -52.49 -0.38 1.35 16 40 H 0.16 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 43 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 44 H 0.07 1.29 8.13 -51.92 -0.42 0.87 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -37.42 363.65 -9.11 -46.53 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.13 Total: 1.17 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: -3.03 Total: 9.36 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.57 Total: -50.68 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: 0.16 Total: -27.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.42 -9.11 -46.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096082033.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.486 kcal (2) G-P(sol) polarization free energy of solvation -37.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds