Wall clock time and date at job start Tue Mar 31 2020 04:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86794 * 120.00398 * 2 1 4 4 H 1.48502 * 109.47345 * 239.99715 * 3 2 1 5 5 H 1.48500 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47324 * 119.99532 * 3 2 1 7 7 C 1.40052 * 119.99466 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99604 * 180.02562 * 7 2 1 9 9 C 1.46379 * 120.00062 * 0.02562 * 7 2 1 10 10 O 1.21686 * 119.99847 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99565 * 180.02562 * 9 7 2 12 12 C 1.47400 * 125.65558 * 179.97438 * 11 9 7 13 13 C 1.55761 * 105.37553 * 203.48029 * 12 11 9 14 14 H 1.08999 * 112.85987 * 204.59746 * 13 12 11 15 15 C 1.53067 * 107.71911 * 79.65741 * 13 12 11 16 16 C 1.51962 * 110.11524 * 187.20292 * 15 13 12 17 17 N 1.45932 * 110.11183 * 53.91317 * 16 15 13 18 18 C 1.46500 * 118.51021 * 157.33322 * 17 16 15 19 19 C 1.50696 * 109.47688 * 269.73372 * 18 17 16 20 20 C 1.38651 * 120.79136 * 269.72443 * 19 18 17 21 21 C 1.38197 * 119.16286 * 180.25000 * 20 19 18 22 22 N 1.31867 * 120.76721 * 0.02562 * 21 20 19 23 23 C 1.31874 * 121.72409 * 359.97438 * 22 21 20 24 24 C 1.38200 * 120.76532 * 359.97438 * 23 22 21 25 25 C 1.33340 * 122.97338 * 337.05888 * 17 16 15 26 26 O 1.21285 * 117.64591 * 180.59705 * 25 17 16 27 27 C 1.49143 * 124.70730 * 0.61521 * 25 17 16 28 28 H 1.09002 * 109.91191 * 228.31182 * 27 25 17 29 29 C 1.47091 * 125.66355 * 359.97090 * 11 9 7 30 30 H 0.96998 * 119.99392 * 0.02562 * 1 2 3 31 31 H 1.08999 * 110.32922 * 322.77574 * 12 11 9 32 32 H 1.08999 * 110.33473 * 85.00659 * 12 11 9 33 33 H 1.09005 * 109.45730 * 306.65659 * 15 13 12 34 34 H 1.08999 * 109.45974 * 66.62167 * 15 13 12 35 35 H 1.08998 * 108.63128 * 294.11631 * 16 15 13 36 36 H 1.09003 * 109.92089 * 174.51728 * 16 15 13 37 37 H 1.09004 * 109.46821 * 149.72926 * 18 17 16 38 38 H 1.09004 * 109.46899 * 29.73995 * 18 17 16 39 39 H 1.08006 * 120.41697 * 0.24579 * 20 19 18 40 40 H 1.08002 * 119.61641 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.61970 * 180.02562 * 23 22 21 42 42 H 1.07998 * 120.42210 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.88855 * 58.64288 * 29 11 9 44 44 H 1.08996 * 110.02575 * 297.52591 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6176 0.0000 4 1 3.0947 1.6962 -1.2125 5 1 1.2760 2.7464 -0.0006 6 1 3.0946 1.6963 1.2126 7 6 2.0069 -1.2129 0.0005 8 1 3.0870 -1.2130 0.0010 9 6 1.2749 -2.4806 0.0005 10 8 0.0581 -2.4804 0.0005 11 7 1.9488 -3.6478 0.0016 12 6 1.3412 -4.9907 0.0023 13 6 2.4257 -5.9344 0.6017 14 1 2.3072 -6.9707 0.2851 15 6 2.3909 -5.7765 2.1238 16 6 3.5448 -6.5380 2.7547 17 7 4.8079 -6.1247 2.1521 18 6 6.0444 -6.3282 2.9110 19 6 6.3276 -5.1069 3.7472 20 6 7.0934 -4.0655 3.2459 21 6 7.3365 -2.9636 4.0438 22 7 6.8500 -2.8965 5.2677 23 6 6.1179 -3.8679 5.7771 24 6 5.8324 -5.0001 5.0379 25 6 4.8882 -5.5751 0.9399 26 8 5.9897 -5.2779 0.5285 27 6 3.7208 -5.2991 0.0536 28 1 3.9211 -5.6718 -0.9509 29 6 3.4125 -3.7930 0.0022 30 1 -0.4849 0.8401 -0.0004 31 1 0.4433 -4.9998 0.6202 32 1 1.1044 -5.2998 -1.0158 33 1 2.4856 -4.7216 2.3816 34 1 1.4456 -6.1605 2.5072 35 1 3.3934 -7.6038 2.5838 36 1 3.5748 -6.3450 3.8271 37 1 6.8711 -6.4955 2.2204 38 1 5.9330 -7.1960 3.5612 39 1 7.4950 -4.1148 2.2445 40 1 7.9318 -2.1480 3.6606 41 1 5.7362 -3.7772 6.7833 42 1 5.2325 -5.7924 5.4607 43 1 3.8339 -3.2982 0.8773 44 1 3.8310 -3.3595 -0.9061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096082034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:43 Heat of formation + Delta-G solvation = -25.442041 kcal Electronic energy + Delta-G solvation = -28775.632365 eV Core-core repulsion = 24885.842912 eV Total energy + Delta-G solvation = -3889.789454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14961 -40.02529 -38.23809 -36.45601 -35.82177 -33.50771 -32.52645 -31.49302 -31.27216 -29.97359 -28.64993 -26.74305 -26.18903 -23.95498 -23.47340 -22.95410 -22.15950 -21.02740 -19.26247 -18.23239 -17.25852 -16.96507 -16.61158 -16.44857 -16.09490 -15.76613 -15.69629 -15.27538 -14.74928 -14.32776 -14.12028 -13.85781 -13.75295 -13.61395 -13.19126 -13.06009 -12.91570 -12.66399 -12.50051 -12.29763 -11.85662 -11.52481 -11.50747 -11.41056 -11.16560 -11.09334 -10.84851 -10.75018 -10.52077 -10.33433 -10.22266 -9.98346 -9.65245 -9.45714 -9.20962 -8.87580 -8.84422 -7.71824 -7.29163 -6.24147 -4.68825 1.04537 1.09762 2.60569 2.91161 3.15411 3.20038 3.22333 3.79395 4.05664 4.31033 4.38790 4.46682 4.49501 4.52614 4.54833 4.64746 4.69921 4.83322 4.95781 5.01036 5.14667 5.21259 5.24785 5.32537 5.42259 5.52652 5.57187 5.62212 5.70032 5.72955 5.74163 5.87046 5.87759 6.19694 6.21076 6.25638 6.28860 6.35059 6.41344 6.50245 6.62674 7.23543 7.33699 7.40509 7.90296 8.04739 8.12370 8.35108 8.98329 9.39663 10.51717 10.70559 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010477 B = 0.004549 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.757880 B = 6154.258153 C = 7738.932593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.573 3.427 10 O -0.574 6.574 11 N -0.642 5.642 12 C 0.119 3.881 13 C -0.100 4.100 14 H 0.096 0.904 15 C -0.131 4.131 16 C 0.114 3.886 17 N -0.599 5.599 18 C 0.150 3.850 19 C -0.062 4.062 20 C -0.146 4.146 21 C 0.097 3.903 22 N -0.484 5.484 23 C 0.094 3.906 24 C -0.163 4.163 25 C 0.534 3.466 26 O -0.550 6.550 27 C -0.112 4.112 28 H 0.111 0.889 29 C 0.147 3.853 30 H 0.270 0.730 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.131 0.869 43 H 0.053 0.947 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.345 -15.155 8.301 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.380 3.620 10 O -0.456 6.456 11 N -0.383 5.383 12 C -0.005 4.005 13 C -0.120 4.120 14 H 0.114 0.886 15 C -0.169 4.169 16 C -0.008 4.008 17 N -0.331 5.331 18 C 0.027 3.973 19 C -0.072 4.072 20 C -0.166 4.166 21 C -0.060 4.060 22 N -0.193 5.193 23 C -0.063 4.063 24 C -0.183 4.183 25 C 0.323 3.677 26 O -0.427 6.427 27 C -0.134 4.134 28 H 0.129 0.871 29 C 0.021 3.979 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.160 0.840 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.149 0.851 43 H 0.072 0.928 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 11.151 -14.053 8.565 19.879 hybrid contribution 0.259 0.049 -0.457 0.528 sum 11.410 -14.003 8.108 19.800 Atomic orbital electron populations 1.70006 1.07047 1.27526 1.34989 1.25710 0.94635 1.00302 0.92523 0.86442 0.79895 0.80930 0.79648 1.19125 1.20422 1.19188 1.20861 0.93573 0.88990 1.54021 0.91383 1.18004 0.86613 0.81042 0.76366 1.90616 1.13749 1.85697 1.55561 1.48732 1.03968 1.04839 1.80806 1.21978 0.95458 0.83855 0.99187 1.22520 0.94806 0.99449 0.95183 0.88558 1.21696 0.97820 1.02447 0.94890 1.21327 0.82802 0.98827 0.97866 1.47381 1.07389 1.61961 1.16389 1.20360 0.88718 0.93917 0.94272 1.20629 0.95458 0.96827 0.94265 1.22249 0.98740 0.94119 1.01475 1.22811 0.96647 0.96957 0.89547 1.67663 1.09165 1.28728 1.13790 1.22722 0.94436 0.89270 0.99885 1.22021 1.01299 1.00048 0.94925 1.19708 0.90763 0.76081 0.81119 1.90665 1.27872 1.51207 1.72986 1.21906 0.92676 0.99296 0.99508 0.87127 1.21199 0.84647 0.90489 1.01542 0.91950 0.91112 0.93416 0.90164 0.89504 0.91663 0.90529 0.88221 0.89345 0.84042 0.82721 0.82907 0.85069 0.92846 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.97 11.83 55.55 0.66 -22.31 16 2 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 3 Si 0.91 20.50 29.56 -169.99 -5.02 15.48 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -15.32 9.06 -35.63 -0.32 -15.64 16 8 H 0.07 1.82 7.16 -52.48 -0.38 1.44 16 9 C 0.57 16.29 7.78 -12.98 -0.10 16.19 16 10 O -0.57 -18.47 15.28 5.20 0.08 -18.39 16 11 N -0.64 -14.33 3.12 -171.91 -0.54 -14.87 16 12 C 0.12 2.12 6.26 -2.08 -0.01 2.10 16 13 C -0.10 -1.29 3.58 -88.43 -0.32 -1.61 16 14 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.13 -1.55 4.94 -27.22 -0.13 -1.69 16 16 C 0.11 1.05 6.37 -4.88 -0.03 1.02 16 17 N -0.60 -6.78 2.79 -177.21 -0.49 -7.27 16 18 C 0.15 1.45 5.40 -5.20 -0.03 1.43 16 19 C -0.06 -0.69 5.49 -104.32 -0.57 -1.27 16 20 C -0.15 -1.82 9.66 -39.44 -0.38 -2.20 16 21 C 0.10 1.24 11.18 -17.55 -0.20 1.04 16 22 N -0.48 -6.60 10.36 -13.26 -0.14 -6.73 16 23 C 0.09 1.06 11.18 -17.55 -0.20 0.86 16 24 C -0.16 -1.62 9.79 -39.44 -0.39 -2.01 16 25 C 0.53 7.64 6.58 -12.37 -0.08 7.56 16 26 O -0.55 -9.16 15.36 5.55 0.09 -9.07 16 27 C -0.11 -1.64 2.94 -91.40 -0.27 -1.91 16 28 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 29 C 0.15 2.78 5.13 -3.29 -0.02 2.76 16 30 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 31 H 0.07 1.34 7.89 -51.93 -0.41 0.93 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.60 8.02 -51.93 -0.42 0.18 16 37 H 0.10 1.05 7.14 -51.93 -0.37 0.68 16 38 H 0.09 0.59 7.99 -51.93 -0.41 0.17 16 39 H 0.14 1.81 7.41 -52.48 -0.39 1.42 16 40 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 0.92 8.03 -52.49 -0.42 0.50 16 43 H 0.05 1.09 7.81 -51.93 -0.41 0.68 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -36.90 362.67 -9.16 -46.06 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.11 Total: 2.63 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: -3.14 Total: 9.02 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.51 Total: -51.19 kcal Atomic # 8 Polarization: -27.63 SS G_CDS: 0.16 Total: -27.46 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.90 -9.16 -46.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096082034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.614 kcal (2) G-P(sol) polarization free energy of solvation -36.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds