Wall clock time and date at job start Tue Mar 31 2020 05:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21252 * 120.00297 * 2 1 4 4 C 1.47185 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.39894 * 120.13510 * 359.97309 * 4 2 1 6 6 C 1.37913 * 119.97405 * 180.02562 * 5 4 2 7 7 C 1.38286 * 120.25642 * 0.04539 * 6 5 4 8 8 C 1.39020 * 120.27917 * 359.95945 * 7 6 5 9 9 N 1.39716 * 119.99607 * 180.02562 * 8 7 6 10 10 C 1.46505 * 119.99322 * 359.97438 * 9 8 7 11 11 C 1.50702 * 109.46853 * 180.02562 * 10 9 8 12 12 O 1.21288 * 119.99876 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00086 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00190 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.46709 * 90.00052 * 14 13 11 16 16 H 1.08002 * 120.00272 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99796 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99850 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00102 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47221 * 89.99733 * 19 17 15 21 21 H 1.48500 * 109.47205 * 209.99613 * 19 17 15 22 22 H 1.48504 * 109.47066 * 329.99679 * 19 17 15 23 23 C 1.46497 * 119.99896 * 0.02562 * 13 11 10 24 24 C 1.53002 * 109.46967 * 89.99897 * 23 13 11 25 25 C 1.47207 * 109.46883 * 179.97438 * 24 23 13 26 26 N 9.18298 * 151.69393 * 199.30068 * 4 1 2 27 27 C 1.38615 * 120.01737 * 0.02562 * 8 7 6 28 28 H 1.08995 * 109.47596 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46940 * 299.99747 * 1 2 3 30 30 H 1.08996 * 109.47136 * 59.99181 * 1 2 3 31 31 H 1.07998 * 120.01249 * 0.04980 * 5 4 2 32 32 H 1.07998 * 119.86719 * 180.02562 * 6 5 4 33 33 H 1.07998 * 119.85985 * 179.97438 * 7 6 5 34 34 H 0.96995 * 120.00580 * 179.97438 * 9 8 7 35 35 H 1.08997 * 109.47082 * 299.99342 * 10 9 8 36 36 H 1.08990 * 109.47309 * 60.00113 * 10 9 8 37 37 H 1.08991 * 109.47291 * 210.00112 * 14 13 11 38 38 H 1.08999 * 109.46841 * 330.00808 * 14 13 11 39 39 H 0.96999 * 119.99795 * 180.02562 * 18 17 15 40 40 H 1.09000 * 109.47202 * 209.99554 * 23 13 11 41 41 H 1.08999 * 109.47435 * 329.99672 * 23 13 11 42 42 H 1.08992 * 109.47157 * 299.99779 * 24 23 13 43 43 H 1.08996 * 109.47562 * 60.00322 * 24 23 13 44 44 H 1.08002 * 120.12510 * 179.72958 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0500 0.0000 4 6 2.2429 -1.2747 -0.0006 5 6 1.5463 -2.4878 -0.0005 6 6 2.2392 -3.6803 -0.0005 7 6 3.6220 -3.6826 0.0004 8 6 4.3250 -2.4832 0.0005 9 7 5.7222 -2.4925 0.0008 10 6 6.4461 -3.7662 0.0017 11 6 7.9296 -3.5008 0.0026 12 8 8.3415 -2.3600 0.0021 13 7 8.7985 -4.5310 0.0041 14 6 10.2406 -4.2729 0.0044 15 6 10.7344 -4.1830 1.4253 16 1 10.0433 -4.3062 2.2461 17 6 12.0688 -3.9445 1.6776 18 7 12.4998 -3.8666 2.9177 19 14 13.2644 -3.7322 0.2581 20 1 13.3350 -2.2977 -0.1192 21 1 14.6112 -4.2024 0.6707 22 1 12.7973 -4.5278 -0.9056 23 6 8.3009 -5.9088 0.0042 24 6 8.1292 -6.3892 -1.4383 25 6 7.6298 -7.7739 -1.4382 26 7 7.2415 -8.8417 -1.4432 27 6 3.6402 -1.2781 0.0002 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.4663 -2.4906 -0.0009 32 1 1.6996 -4.6158 -0.0009 33 1 4.1582 -4.6201 0.0008 34 1 6.2128 -1.6558 0.0005 35 1 6.1788 -4.3354 0.8920 36 1 6.1792 -4.3364 -0.8879 37 1 10.7552 -5.0855 -0.5084 38 1 10.4417 -3.3334 -0.5102 39 1 13.4385 -3.6984 3.0952 40 1 9.0140 -6.5526 0.5190 41 1 7.3399 -5.9481 0.5170 42 1 7.4161 -5.7455 -1.9532 43 1 9.0902 -6.3500 -1.9512 44 1 4.1846 -0.3453 0.0046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969775.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:09 Heat of formation + Delta-G solvation = -8.999263 kcal Electronic energy + Delta-G solvation = -26623.550512 eV Core-core repulsion = 22734.474070 eV Total energy + Delta-G solvation = -3889.076441 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.30132 -39.69095 -38.52082 -37.06392 -35.73882 -35.19731 -32.91439 -31.73599 -31.19051 -30.99387 -29.42265 -28.24522 -26.36003 -24.25708 -23.82831 -22.42717 -22.19417 -19.68899 -18.93377 -18.00795 -17.70592 -16.97093 -16.82583 -16.48427 -15.92039 -15.59552 -15.45068 -15.18292 -15.04748 -14.87681 -14.65285 -14.22898 -13.89903 -13.82343 -13.70649 -13.37480 -13.06627 -12.68468 -12.65813 -12.62648 -12.59992 -12.36570 -12.28024 -11.93685 -11.83405 -11.69442 -11.35213 -11.19254 -11.04626 -10.65561 -10.34292 -10.29011 -9.96403 -9.71014 -9.42061 -9.15020 -8.70460 -8.11832 -7.58272 -6.19769 -4.20566 0.52257 1.38348 2.28441 2.56759 2.67381 2.91908 3.04045 3.20660 3.25693 3.29508 3.52250 3.71655 3.88371 3.99508 4.28642 4.63509 4.65317 4.71437 4.79914 4.82439 4.90720 4.98116 5.08667 5.10608 5.12894 5.20353 5.21102 5.31753 5.35336 5.46346 5.60229 5.64167 5.74065 5.88147 6.07271 6.17381 6.27892 6.40980 6.55978 6.72583 6.98190 7.14805 7.31374 7.43265 7.45383 7.63606 7.87076 8.30134 8.55419 8.82989 9.38789 10.93293 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012188 B = 0.002765 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.717380 B =10123.896577 C =11926.882508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.394 3.606 3 O -0.459 6.459 4 C -0.126 4.126 5 C -0.141 4.141 6 C -0.083 4.083 7 C -0.173 4.173 8 C 0.215 3.785 9 N -0.731 5.731 10 C 0.101 3.899 11 C 0.505 3.495 12 O -0.526 6.526 13 N -0.586 5.586 14 C 0.215 3.785 15 C -0.535 4.535 16 H 0.076 0.924 17 C 0.074 3.926 18 N -0.893 5.893 19 Si 0.876 3.124 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.114 3.886 24 C -0.051 4.051 25 C 0.214 3.786 26 N -0.439 5.439 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.414 0.586 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.035 0.965 38 H 0.041 0.959 39 H 0.266 0.734 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.117 0.883 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.548 -1.153 -8.776 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.272 3.728 3 O -0.335 6.335 4 C -0.128 4.128 5 C -0.161 4.161 6 C -0.102 4.102 7 C -0.196 4.196 8 C 0.110 3.890 9 N -0.363 5.363 10 C -0.027 4.027 11 C 0.291 3.709 12 O -0.402 6.402 13 N -0.318 5.318 14 C 0.095 3.905 15 C -0.573 4.573 16 H 0.094 0.906 17 C -0.129 4.129 18 N -0.531 5.531 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.190 1.190 23 C -0.013 4.013 24 C -0.092 4.092 25 C -0.104 4.104 26 N -0.116 5.116 27 C -0.159 4.159 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.253 0.747 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.059 0.941 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -21.258 -1.728 -8.663 23.020 hybrid contribution 1.160 0.579 -0.512 1.394 sum -20.098 -1.149 -9.175 22.123 Atomic orbital electron populations 1.22235 0.93866 1.04908 1.04795 1.22568 0.91650 0.87735 0.70806 1.90548 1.72141 1.34491 1.36283 1.20195 0.93586 0.94653 1.04367 1.21180 0.99649 0.91369 1.03909 1.20842 0.93460 0.97934 0.97934 1.20912 0.94598 0.96540 1.07531 1.17709 0.83553 0.93633 0.94111 1.44495 1.02080 1.08479 1.81206 1.21221 0.90814 0.87658 1.03004 1.20200 0.87584 0.85666 0.77442 1.90704 1.79025 1.21225 1.49254 1.47830 1.08486 1.03926 1.71510 1.19780 0.74590 0.97365 0.98785 1.21264 0.94565 1.50449 0.91063 0.90626 1.24859 0.98112 0.94353 0.95570 1.69886 1.15840 1.48679 1.18702 0.86870 0.80849 0.79265 0.82783 1.19871 1.21029 1.18973 1.21407 1.01726 0.84808 0.93313 1.19880 1.03715 0.84361 1.01293 1.29007 0.93218 0.94827 0.93342 1.81244 1.09659 1.12355 1.08342 1.20848 0.93331 0.97065 1.04616 0.89593 0.88873 0.88896 0.85388 0.85573 0.85655 0.74677 0.89289 0.89603 0.94700 0.94149 0.92398 0.88089 0.90152 0.87460 0.86519 0.85002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.19 10.19 36.01 0.37 -0.82 16 2 C 0.39 4.05 7.23 -30.67 -0.22 3.83 16 3 O -0.46 -6.45 17.09 5.58 0.10 -6.35 16 4 C -0.13 -1.32 5.87 -105.09 -0.62 -1.93 16 5 C -0.14 -1.14 9.45 -39.08 -0.37 -1.51 16 6 C -0.08 -0.67 10.02 -39.68 -0.40 -1.07 16 7 C -0.17 -1.65 9.31 -39.27 -0.37 -2.01 16 8 C 0.21 2.48 6.65 -83.84 -0.56 1.92 16 9 N -0.73 -9.19 5.71 -59.85 -0.34 -9.53 16 10 C 0.10 1.16 3.94 -5.19 -0.02 1.14 16 11 C 0.51 8.24 7.74 -10.99 -0.09 8.16 16 12 O -0.53 -10.98 15.25 5.55 0.08 -10.90 16 13 N -0.59 -9.43 2.46 -175.06 -0.43 -9.86 16 14 C 0.21 4.47 4.23 -5.19 -0.02 4.45 16 15 C -0.54 -13.97 9.94 -34.44 -0.34 -14.31 16 16 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 17 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 18 N -0.89 -26.29 13.96 55.43 0.77 -25.51 16 19 Si 0.88 20.09 27.47 -169.99 -4.67 15.42 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -5.55 6.54 56.52 0.37 -5.18 16 23 C 0.11 1.27 5.17 -4.04 -0.02 1.25 16 24 C -0.05 -0.42 6.03 -29.51 -0.18 -0.60 16 25 C 0.21 2.21 15.43 -20.75 -0.32 1.89 16 26 N -0.44 -5.79 18.54 42.16 0.78 -5.01 16 27 C -0.14 -1.64 9.44 -38.89 -0.37 -2.01 16 28 H 0.09 0.33 5.60 -51.93 -0.29 0.04 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.13 0.66 5.92 -52.49 -0.31 0.35 16 32 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 33 H 0.13 0.99 6.71 -52.49 -0.35 0.64 16 34 H 0.41 5.87 7.45 -40.82 -0.30 5.56 16 35 H 0.09 0.91 7.20 -51.93 -0.37 0.54 16 36 H 0.09 0.72 6.99 -51.93 -0.36 0.36 16 37 H 0.04 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 39 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.10 1.25 8.07 -51.93 -0.42 0.83 16 41 H 0.08 0.71 6.44 -51.93 -0.33 0.38 16 42 H 0.11 0.66 7.22 -51.93 -0.38 0.29 16 43 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.13 1.70 7.65 -52.49 -0.40 1.30 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -35.09 379.39 -7.13 -42.22 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -5.53 Total: 3.53 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.61 Total: 0.29 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.78 Total: -49.92 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.18 Total: -17.25 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -4.67 Total: 15.42 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.09 -7.13 -42.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969775.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.224 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds