Wall clock time and date at job start Tue Mar 31 2020 05:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36938 * 119.99867 * 2 1 4 4 H 1.08001 * 120.00175 * 202.34748 * 3 2 1 5 5 C 1.38813 * 120.00111 * 22.34491 * 3 2 1 6 6 N 1.31619 * 119.99680 * 11.27653 * 5 3 2 7 7 Si 1.86799 * 119.99942 * 191.28221 * 5 3 2 8 8 H 1.48501 * 109.47356 * 59.99971 * 7 5 3 9 9 H 1.48504 * 109.46773 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46973 * 299.99535 * 7 5 3 11 11 C 1.46506 * 120.00423 * 180.02562 * 2 1 3 12 12 N 1.46504 * 109.46685 * 269.99975 * 11 2 1 13 13 C 1.33878 * 124.19801 * 269.69538 * 12 11 2 14 14 O 1.21543 * 123.79176 * 0.02562 * 13 12 11 15 15 N 1.34711 * 112.40785 * 179.86933 * 13 12 11 16 16 C 1.46733 * 106.40432 * 0.44687 * 15 13 12 17 17 C 1.52678 * 110.60385 * 118.25251 * 16 15 13 18 18 C 1.52777 * 108.61596 * 54.66671 * 17 16 15 19 19 C 1.50632 * 110.63998 * 50.61557 * 18 17 16 20 20 C 1.38935 * 117.66872 * 161.37268 * 19 18 17 21 21 C 1.37926 * 120.58149 * 179.66855 * 20 19 18 22 22 C 1.38271 * 119.76292 * 359.94140 * 21 20 19 23 23 C 1.37925 * 119.76418 * 0.20148 * 22 21 20 24 24 C 1.37655 * 122.70244 * 341.34774 * 19 18 17 25 25 C 1.50704 * 122.57350 * 1.10184 * 24 19 18 26 26 C 1.34934 * 124.19900 * 90.00106 * 12 11 2 27 27 O 1.21235 * 127.27065 * 359.87473 * 26 12 11 28 28 H 1.09004 * 109.47149 * 274.28347 * 1 2 3 29 29 H 1.08991 * 109.47413 * 34.28917 * 1 2 3 30 30 H 1.09007 * 109.46809 * 154.29078 * 1 2 3 31 31 H 0.97001 * 119.99566 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.46899 * 29.99326 * 11 2 1 33 33 H 1.08996 * 109.46975 * 150.00086 * 11 2 1 34 34 H 0.97003 * 126.79873 * 180.22878 * 15 13 12 35 35 H 1.08991 * 109.61450 * 174.41023 * 17 16 15 36 36 H 1.09003 * 109.61567 * 294.76124 * 17 16 15 37 37 H 1.09001 * 109.24320 * 170.91065 * 18 17 16 38 38 H 1.09000 * 109.24718 * 290.35364 * 18 17 16 39 39 H 1.08003 * 119.70897 * 359.68307 * 20 19 18 40 40 H 1.07998 * 120.12041 * 179.97438 * 21 20 19 41 41 H 1.08006 * 120.11547 * 180.18101 * 22 21 20 42 42 H 1.07994 * 119.73141 * 180.02562 * 23 22 21 43 43 H 1.08999 * 109.21419 * 223.29832 * 25 24 19 44 44 H 1.09005 * 109.21065 * 103.98107 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1688 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3834 2.2691 1.0924 7 14 2.3374 4.0046 0.1702 8 1 2.4938 4.2337 -1.2887 9 1 1.4850 5.0734 0.7501 10 1 3.6721 4.0278 0.8208 11 6 2.1976 -1.2687 -0.0006 12 7 2.4417 -1.6922 1.3805 13 6 3.5288 -1.3607 2.0882 14 8 4.4313 -0.6701 1.6572 15 7 3.5082 -1.8760 3.3327 16 6 2.2618 -2.6424 3.4433 17 6 2.5592 -4.1170 3.7044 18 6 3.4545 -4.2230 4.9378 19 6 2.8756 -3.4347 6.0835 20 6 3.3270 -3.7309 7.3636 21 6 2.8425 -3.0415 8.4556 22 6 1.9001 -2.0458 8.2758 23 6 1.4481 -1.7520 7.0062 24 6 1.9318 -2.4485 5.9059 25 6 1.3786 -2.0894 4.5508 26 6 1.6017 -2.4695 2.0953 27 8 0.5410 -2.9312 1.7325 28 1 -0.3634 0.0768 1.0248 29 1 -0.3634 0.8490 -0.5789 30 1 -0.3633 -0.9260 -0.4458 31 1 -0.0468 3.0776 1.4120 32 1 1.6085 -2.0281 -0.5146 33 1 3.1499 -1.1381 -0.5143 34 1 4.1850 -1.7652 4.0187 35 1 1.6266 -4.6524 3.8821 36 1 3.0687 -4.5459 2.8415 37 1 3.5416 -5.2696 5.2296 38 1 4.4439 -3.8334 4.6982 39 1 4.0641 -4.5076 7.5049 40 1 3.1983 -3.2781 9.4474 41 1 1.5189 -1.5004 9.1265 42 1 0.7124 -0.9740 6.8663 43 1 1.3269 -1.0044 4.4605 44 1 0.3758 -2.5050 4.4511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:40 Heat of formation + Delta-G solvation = 8.068773 kcal Electronic energy + Delta-G solvation = -29252.495871 eV Core-core repulsion = 25364.159555 eV Total energy + Delta-G solvation = -3888.336316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.12553 -39.76258 -37.91630 -36.70738 -35.61491 -34.49040 -32.95249 -32.33803 -30.81934 -29.89072 -28.83364 -26.48603 -25.81570 -24.29334 -23.42102 -22.31611 -22.13880 -21.45217 -19.81227 -19.44602 -17.44563 -16.82856 -16.68724 -16.17109 -15.82833 -15.45564 -15.27527 -15.01843 -14.70168 -14.52250 -14.37573 -13.97152 -13.67540 -13.45938 -13.40459 -13.22044 -13.06855 -12.85882 -12.38465 -12.11886 -12.01833 -11.66412 -11.54785 -11.39108 -11.09190 -10.96128 -10.77838 -10.75775 -10.50434 -10.17957 -10.10276 -10.03366 -9.48145 -9.10378 -8.98885 -8.85826 -8.65765 -8.65184 -7.08107 -5.84601 -3.33194 1.23954 1.26328 2.20759 2.92383 3.39600 3.41779 3.45093 3.59144 3.63733 3.79380 4.28350 4.43340 4.45598 4.56365 4.74443 4.81453 4.88448 5.01385 5.05673 5.22356 5.36343 5.39013 5.42421 5.47051 5.59529 5.67757 5.69912 5.75793 5.80500 5.87898 5.94652 6.06881 6.13718 6.34053 6.37496 6.40904 6.53942 6.56760 6.74437 6.89669 7.27469 7.30124 7.64971 7.78867 7.83139 8.02980 8.24864 8.85099 9.09842 9.67342 10.13518 11.18967 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.004100 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.287932 B = 6827.491744 C = 7458.864158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.569 5.569 3 C -0.262 4.262 4 H 0.079 0.921 5 C 0.010 3.990 6 N -0.902 5.902 7 Si 0.911 3.089 8 H -0.281 1.281 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.344 3.656 12 N -0.574 5.574 13 C 0.702 3.298 14 O -0.540 6.540 15 N -0.728 5.728 16 C 0.123 3.877 17 C -0.109 4.109 18 C -0.077 4.077 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.125 4.125 22 C -0.121 4.121 23 C -0.115 4.115 24 C -0.064 4.064 25 C -0.077 4.077 26 C 0.533 3.467 27 O -0.481 6.481 28 H 0.032 0.968 29 H 0.052 0.948 30 H 0.006 0.994 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.428 0.572 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 -14.352 12.131 19.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.288 5.288 3 C -0.391 4.391 4 H 0.096 0.904 5 C -0.189 4.189 6 N -0.545 5.545 7 Si 0.740 3.260 8 H -0.207 1.207 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.136 3.864 12 N -0.326 5.326 13 C 0.403 3.597 14 O -0.412 6.412 15 N -0.394 5.394 16 C 0.031 3.969 17 C -0.148 4.148 18 C -0.114 4.114 19 C -0.081 4.081 20 C -0.137 4.137 21 C -0.143 4.143 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.064 4.064 25 C -0.115 4.115 26 C 0.318 3.682 27 O -0.352 6.352 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.025 0.975 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.271 0.729 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.111 0.889 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.225 -13.967 11.513 18.386 hybrid contribution 0.603 1.176 0.672 1.483 sum 3.828 -12.791 12.185 18.076 Atomic orbital electron populations 1.20948 0.81567 0.96347 0.99872 1.44843 1.02872 1.01242 1.79892 1.19345 0.98426 0.84584 1.36792 0.90351 1.25125 0.97336 0.99017 0.97433 1.70085 1.17562 1.27658 1.39232 0.86236 0.78744 0.82909 0.78123 1.20687 1.21559 1.20576 1.21798 0.97338 0.87859 0.79394 1.49513 1.19185 1.45864 1.18046 1.16373 0.82897 0.79349 0.81086 1.90948 1.37806 1.39555 1.72935 1.45699 1.23211 1.55402 1.15064 1.20817 0.86439 0.93975 0.95686 1.21603 1.01618 0.92963 0.98615 1.20422 0.98971 0.99865 0.92145 1.19594 0.97119 0.96657 0.94735 1.21109 1.00298 1.00271 0.92010 1.21043 0.97872 0.96760 0.98614 1.21063 0.97784 0.98000 0.97019 1.21192 1.00191 0.99703 0.92182 1.19492 0.96530 0.95697 0.94721 1.20553 0.98788 1.02864 0.89284 1.20564 0.84161 0.77284 0.86190 1.90713 1.19452 1.49460 1.75609 0.94971 0.92948 0.97514 0.93444 0.90466 0.89705 0.72903 0.89379 0.90360 0.89975 0.90221 0.86232 0.86266 0.86139 0.85869 0.88945 0.88283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 9.01 59.84 0.54 4.45 16 2 N -0.57 -14.41 3.16 -184.86 -0.59 -15.00 16 3 C -0.26 -7.29 9.67 -15.06 -0.15 -7.43 16 4 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 5 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 6 N -0.90 -26.10 10.58 55.49 0.59 -25.51 16 7 Si 0.91 22.31 29.57 -169.99 -5.03 17.28 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 11 C 0.34 7.32 6.28 -63.74 -0.40 6.92 16 12 N -0.57 -11.54 2.85 -124.30 -0.35 -11.89 16 13 C 0.70 14.09 8.63 -87.78 -0.76 13.33 16 14 O -0.54 -12.76 17.48 5.33 0.09 -12.67 16 15 N -0.73 -11.22 5.34 -54.05 -0.29 -11.51 16 16 C 0.12 1.76 0.84 -133.29 -0.11 1.65 16 17 C -0.11 -1.20 5.10 -27.01 -0.14 -1.33 16 18 C -0.08 -0.70 5.24 -28.03 -0.15 -0.84 16 19 C -0.08 -0.85 5.74 -104.61 -0.60 -1.45 16 20 C -0.12 -1.11 9.60 -39.44 -0.38 -1.49 16 21 C -0.12 -1.16 10.05 -39.68 -0.40 -1.55 16 22 C -0.12 -1.21 10.05 -39.68 -0.40 -1.61 16 23 C -0.11 -1.32 9.61 -39.44 -0.38 -1.70 16 24 C -0.06 -0.77 5.71 -104.58 -0.60 -1.37 16 25 C -0.08 -1.07 4.73 -28.36 -0.13 -1.20 16 26 C 0.53 9.72 6.93 -10.72 -0.07 9.64 16 27 O -0.48 -9.57 17.77 5.60 0.10 -9.47 16 28 H 0.03 0.87 7.41 -51.93 -0.39 0.49 16 29 H 0.05 1.38 7.19 -51.93 -0.37 1.00 16 30 H 0.01 0.14 7.84 -51.93 -0.41 -0.27 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.48 7.73 -51.93 -0.40 1.08 16 33 H 0.08 1.78 7.75 -51.93 -0.40 1.38 16 34 H 0.43 5.75 8.26 -40.82 -0.34 5.41 16 35 H 0.09 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.08 0.83 8.12 -51.93 -0.42 0.40 16 37 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.08 0.69 7.42 -51.93 -0.39 0.31 16 39 H 0.12 0.86 8.05 -52.48 -0.42 0.44 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.12 1.35 8.05 -52.49 -0.42 0.92 16 43 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 44 H 0.10 1.35 8.13 -51.93 -0.42 0.93 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -32.90 363.02 -10.25 -43.15 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.04 Total: 3.93 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: -4.21 Total: 16.22 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: -0.64 Total: -63.91 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: 0.19 Total: -22.14 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.90 -10.25 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.222 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds