Wall clock time and date at job start Tue Mar 31 2020 05:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36937 * 119.99823 * 2 1 4 4 H 1.08004 * 119.99252 * 202.29692 * 3 2 1 5 5 C 1.38805 * 120.00293 * 22.29680 * 3 2 1 6 6 N 1.31624 * 120.00244 * 11.27478 * 5 3 2 7 7 Si 1.86800 * 120.00235 * 191.27374 * 5 3 2 8 8 H 1.48503 * 109.46775 * 89.99892 * 7 5 3 9 9 H 1.48498 * 109.47601 * 210.00194 * 7 5 3 10 10 H 1.48506 * 109.46936 * 330.00465 * 7 5 3 11 11 C 1.46498 * 119.99713 * 179.97438 * 2 1 3 12 12 N 1.46504 * 109.47001 * 269.99990 * 11 2 1 13 13 C 1.33882 * 124.19949 * 90.03013 * 12 11 2 14 14 O 1.21537 * 123.79527 * 359.97438 * 13 12 11 15 15 N 1.34702 * 112.40872 * 179.72881 * 13 12 11 16 16 C 1.46786 * 106.39634 * 0.19879 * 15 13 12 17 17 C 1.52681 * 110.48004 * 241.40891 * 16 15 13 18 18 C 1.52766 * 108.60968 * 169.17860 * 17 16 15 19 19 C 1.50620 * 110.66948 * 50.57374 * 18 17 16 20 20 C 1.38935 * 117.66856 * 161.40468 * 19 18 17 21 21 C 1.37929 * 120.56874 * 179.66040 * 20 19 18 22 22 C 1.38257 * 119.77057 * 359.94858 * 21 20 19 23 23 C 1.37921 * 119.76158 * 0.20662 * 22 21 20 24 24 C 1.37645 * 122.69503 * 341.38816 * 19 18 17 25 25 C 1.50694 * 122.57063 * 1.10983 * 24 19 18 26 26 C 1.34953 * 124.20411 * 270.22611 * 12 11 2 27 27 O 1.21237 * 127.26812 * 0.03573 * 26 12 11 28 28 H 1.09000 * 109.47736 * 274.33730 * 1 2 3 29 29 H 1.09003 * 109.47171 * 34.33826 * 1 2 3 30 30 H 1.09004 * 109.47441 * 154.33508 * 1 2 3 31 31 H 0.96994 * 120.00534 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.46790 * 150.00519 * 11 2 1 33 33 H 1.09000 * 109.47351 * 29.99910 * 11 2 1 34 34 H 0.97003 * 126.80237 * 180.19839 * 15 13 12 35 35 H 1.09002 * 109.61480 * 288.91769 * 17 16 15 36 36 H 1.09003 * 109.61492 * 49.26682 * 17 16 15 37 37 H 1.09003 * 109.23870 * 170.88006 * 18 17 16 38 38 H 1.09002 * 109.23772 * 290.30951 * 18 17 16 39 39 H 1.07999 * 119.71650 * 359.64287 * 20 19 18 40 40 H 1.08004 * 120.11076 * 179.97438 * 21 20 19 41 41 H 1.07998 * 120.12228 * 180.18831 * 22 21 20 42 42 H 1.08003 * 119.72822 * 180.02562 * 23 22 21 43 43 H 1.08996 * 109.20916 * 223.24703 * 25 24 19 44 44 H 1.08998 * 109.21731 * 103.92126 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1691 1.2208 -0.3549 5 6 1.5335 2.3431 0.4561 6 7 0.3826 2.2697 1.0906 7 14 2.3375 4.0047 0.1694 8 1 1.8712 4.5634 -1.1251 9 1 1.9675 4.9302 1.2701 10 1 3.8132 3.8411 0.1351 11 6 2.1974 -1.2687 0.0006 12 7 2.4416 -1.6910 1.3820 13 6 1.6083 -2.4620 2.0917 14 8 0.5566 -2.8943 1.6625 15 7 2.0691 -2.7092 3.3330 16 6 3.3552 -2.0106 3.4443 17 6 4.4833 -3.0063 3.7034 18 6 5.8190 -2.2823 3.5433 19 6 5.8357 -1.0123 4.3527 20 6 7.0717 -0.4461 4.6393 21 6 7.1563 0.7205 5.3702 22 6 6.0019 1.3333 5.8213 23 6 4.7740 0.7713 5.5408 24 6 4.6871 -0.4060 4.8087 25 6 3.3147 -0.9752 4.5572 26 6 3.5325 -1.3481 2.0986 27 8 4.4615 -0.6582 1.7368 28 1 -0.3634 0.0777 1.0247 29 1 -0.3634 0.8486 -0.5797 30 1 -0.3634 -0.9263 -0.4451 31 1 -0.0478 3.0782 1.4096 32 1 3.1499 -1.1386 -0.5133 33 1 1.6084 -2.0286 -0.5129 34 1 1.6366 -3.2431 4.0178 35 1 4.3992 -3.3990 4.7168 36 1 4.4200 -3.8255 2.9872 37 1 6.6240 -2.9347 3.8819 38 1 5.9719 -2.0394 2.4917 39 1 7.9739 -0.9237 4.2869 40 1 8.1210 1.1540 5.5891 41 1 6.0615 2.2485 6.3916 42 1 3.8726 1.2506 5.8931 43 1 2.6387 -0.1689 4.2726 44 1 2.9480 -1.4442 5.4703 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101536729.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:44 Heat of formation + Delta-G solvation = 11.582837 kcal Electronic energy + Delta-G solvation = -29766.852512 eV Core-core repulsion = 25878.668578 eV Total energy + Delta-G solvation = -3888.183934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.12478 -39.59535 -37.83464 -36.53912 -35.56771 -34.56079 -33.01316 -32.24980 -30.85654 -29.64472 -28.43601 -26.49483 -25.83304 -24.08606 -23.38292 -22.10234 -21.93930 -21.62877 -20.27040 -18.92112 -17.45325 -16.92889 -16.48115 -16.20405 -15.74325 -15.41242 -15.21953 -14.94079 -14.59872 -14.50130 -14.09838 -13.95465 -13.56328 -13.38449 -13.27232 -12.96532 -12.81670 -12.77206 -12.35754 -12.07456 -12.04665 -11.67135 -11.44310 -11.35937 -10.97731 -10.83340 -10.75231 -10.62982 -10.50055 -10.20560 -10.07422 -10.00791 -9.40735 -9.14922 -8.95690 -8.66415 -8.59136 -8.39591 -7.07504 -5.84840 -3.34420 1.50137 1.53105 2.30947 2.90291 3.35614 3.41055 3.44782 3.59904 3.75967 3.87774 4.34146 4.43851 4.54830 4.61246 4.92786 5.00586 5.05982 5.17838 5.23351 5.35838 5.37427 5.49194 5.51310 5.55615 5.63403 5.76007 5.79982 5.86481 5.89579 6.05465 6.14161 6.17742 6.25936 6.31792 6.59842 6.60399 6.63332 6.76343 6.81592 7.14155 7.19782 7.33889 7.70864 7.77197 7.81548 8.14643 8.24479 8.78184 9.09113 9.67276 10.14306 11.18077 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.010614 B = 0.006023 C = 0.004398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.445991 B = 4647.643630 C = 6364.993648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.570 5.570 3 C -0.264 4.264 4 H 0.078 0.922 5 C 0.011 3.989 6 N -0.899 5.899 7 Si 0.908 3.092 8 H -0.285 1.285 9 H -0.290 1.290 10 H -0.275 1.275 11 C 0.345 3.655 12 N -0.578 5.578 13 C 0.702 3.298 14 O -0.554 6.554 15 N -0.733 5.733 16 C 0.118 3.882 17 C -0.109 4.109 18 C -0.085 4.085 19 C -0.056 4.056 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.112 4.112 24 C -0.067 4.067 25 C -0.071 4.071 26 C 0.535 3.465 27 O -0.456 6.456 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.008 0.992 31 H 0.255 0.745 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.428 0.572 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 -9.649 9.686 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.289 5.289 3 C -0.394 4.394 4 H 0.095 0.905 5 C -0.189 4.189 6 N -0.542 5.542 7 Si 0.737 3.263 8 H -0.212 1.212 9 H -0.216 1.216 10 H -0.200 1.200 11 C 0.137 3.863 12 N -0.330 5.330 13 C 0.403 3.597 14 O -0.429 6.429 15 N -0.396 5.396 16 C 0.026 3.974 17 C -0.147 4.147 18 C -0.122 4.122 19 C -0.056 4.056 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.130 4.130 24 C -0.068 4.068 25 C -0.109 4.109 26 C 0.320 3.680 27 O -0.325 6.325 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.271 0.729 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.108 0.892 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.111 -9.245 9.074 16.434 hybrid contribution 0.012 0.968 0.542 1.110 sum 10.124 -8.277 9.617 16.232 Atomic orbital electron populations 1.20921 0.81453 0.96262 0.99869 1.44832 1.02985 1.01141 1.79968 1.19356 0.98390 0.84708 1.36930 0.90467 1.25126 0.97333 0.98961 0.97443 1.70105 1.17482 1.27509 1.39135 0.86195 0.79270 0.83407 0.77421 1.21154 1.21596 1.20042 1.21753 0.97134 0.87994 0.79374 1.49492 1.19950 1.45735 1.17860 1.16421 0.83504 0.78665 0.81133 1.90921 1.22149 1.56609 1.73205 1.45689 1.22592 1.55841 1.15511 1.20925 0.85815 0.93970 0.96662 1.21617 0.92906 0.96935 1.03284 1.20561 0.96736 0.93465 1.01444 1.19419 0.92439 0.96618 0.97153 1.21050 0.96863 0.96593 0.99379 1.20996 0.98200 0.95957 0.98869 1.20980 0.92582 0.99840 1.00928 1.21093 0.97985 0.95221 0.98687 1.19295 0.93542 0.95563 0.98363 1.20449 0.95335 0.98026 0.97136 1.20384 0.82435 0.79422 0.85803 1.90728 1.32727 1.34001 1.75053 0.94975 0.93148 0.97390 0.93473 0.89906 0.90406 0.72885 0.90069 0.90336 0.90291 0.88883 0.86375 0.86406 0.86318 0.86207 0.89245 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 9.01 59.85 0.54 4.61 16 2 N -0.57 -14.54 3.16 -184.85 -0.59 -15.12 16 3 C -0.26 -7.30 9.67 -15.06 -0.15 -7.45 16 4 H 0.08 2.15 7.84 -52.48 -0.41 1.73 16 5 C 0.01 0.31 5.13 -17.43 -0.09 0.22 16 6 N -0.90 -26.15 10.58 55.49 0.59 -25.57 16 7 Si 0.91 22.24 29.57 -169.99 -5.03 17.22 16 8 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.34 7.42 6.27 -63.75 -0.40 7.02 16 12 N -0.58 -11.71 2.85 -124.32 -0.35 -12.06 16 13 C 0.70 13.56 8.63 -87.78 -0.76 12.80 16 14 O -0.55 -12.24 17.49 5.33 0.09 -12.14 16 15 N -0.73 -10.68 5.90 -54.04 -0.32 -11.00 16 16 C 0.12 1.73 1.01 -133.29 -0.13 1.59 16 17 C -0.11 -1.22 5.26 -27.01 -0.14 -1.36 16 18 C -0.08 -1.01 5.07 -28.04 -0.14 -1.15 16 19 C -0.06 -0.77 5.07 -104.62 -0.53 -1.30 16 20 C -0.12 -1.52 9.60 -39.44 -0.38 -1.90 16 21 C -0.12 -1.49 10.05 -39.69 -0.40 -1.89 16 22 C -0.13 -1.61 10.05 -39.69 -0.40 -2.01 16 23 C -0.11 -1.59 9.61 -39.45 -0.38 -1.97 16 24 C -0.07 -0.99 5.36 -104.59 -0.56 -1.55 16 25 C -0.07 -1.03 4.83 -28.36 -0.14 -1.17 16 26 C 0.54 10.23 6.45 -10.74 -0.07 10.16 16 27 O -0.46 -9.77 14.79 5.59 0.08 -9.69 16 28 H 0.03 0.90 7.41 -51.93 -0.38 0.52 16 29 H 0.05 1.35 7.19 -51.93 -0.37 0.98 16 30 H 0.01 0.18 7.84 -51.93 -0.41 -0.23 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.08 1.71 7.91 -51.93 -0.41 1.30 16 33 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 34 H 0.43 4.86 8.96 -40.82 -0.37 4.50 16 35 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 38 H 0.09 1.30 6.36 -51.93 -0.33 0.97 16 39 H 0.12 1.21 8.05 -52.49 -0.42 0.79 16 40 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 41 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.12 1.57 8.05 -52.48 -0.42 1.15 16 43 H 0.09 1.56 8.08 -51.93 -0.42 1.14 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 358.99 15.07 5.41 5.41 Total: -1.00 -33.53 358.99 -10.25 -43.78 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -6.01 Total: 4.50 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: -4.13 Total: 14.67 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.67 Total: -63.75 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: 0.18 Total: -21.83 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.53 -10.25 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101536729.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.366 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds