Wall clock time and date at job start Tue Mar 31 2020 04:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 120.00017 * 2 1 4 4 C 1.38235 * 120.00403 * 179.97438 * 3 2 1 5 5 C 1.38234 * 119.99579 * 0.26111 * 4 3 2 6 6 C 1.50708 * 119.99667 * 179.71875 * 5 4 3 7 7 C 1.53005 * 109.46467 * 90.00153 * 6 5 4 8 8 C 1.50708 * 109.46467 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00139 * 359.97438 * 8 7 6 10 10 N 1.34775 * 119.99752 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00230 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47286 * 179.97438 * 11 10 8 13 13 O 1.21294 * 119.99788 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00083 * 180.02562 * 12 11 10 15 15 C 1.37095 * 120.00063 * 180.02562 * 14 12 11 16 16 H 1.08004 * 120.00022 * 17.71485 * 15 14 12 17 17 C 1.38951 * 119.99922 * 197.71462 * 15 14 12 18 18 N 1.31412 * 119.99667 * 21.41869 * 17 15 14 19 19 Si 1.86795 * 120.00393 * 201.41437 * 17 15 14 20 20 H 1.48508 * 109.46948 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47353 * 119.99991 * 19 17 15 22 22 H 1.48500 * 109.47120 * 240.00571 * 19 17 15 23 23 C 1.46504 * 119.99740 * 359.97438 * 14 12 11 24 24 C 1.47199 * 109.47092 * 84.23568 * 23 14 12 25 25 N 9.87400 * 162.62766 * 308.57686 * 4 1 2 26 26 C 1.38229 * 120.00461 * 359.48805 * 5 4 3 27 27 C 1.38234 * 120.00643 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.47027 * 89.99966 * 1 2 3 29 29 H 1.09005 * 109.46649 * 209.99972 * 1 2 3 30 30 H 1.08993 * 109.47306 * 329.99268 * 1 2 3 31 31 H 1.08004 * 119.99509 * 359.97438 * 3 2 1 32 32 H 1.08002 * 119.99956 * 179.97438 * 4 3 2 33 33 H 1.08996 * 109.46933 * 210.00267 * 6 5 4 34 34 H 1.08998 * 109.47198 * 330.00224 * 6 5 4 35 35 H 1.08993 * 109.47176 * 299.99502 * 7 6 5 36 36 H 1.08998 * 109.47354 * 60.00166 * 7 6 5 37 37 H 0.97002 * 120.00060 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.46758 * 300.00083 * 11 10 8 39 39 H 1.08998 * 109.46896 * 59.99748 * 11 10 8 40 40 H 0.97002 * 119.99722 * 179.97438 * 18 17 15 41 41 H 1.09006 * 109.46891 * 204.23911 * 23 14 12 42 42 H 1.09004 * 109.47219 * 324.23028 * 23 14 12 43 43 H 1.07997 * 120.00779 * 180.25349 * 26 5 4 44 44 H 1.08002 * 119.99787 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0001 -0.0044 6 6 5.7787 0.0002 -0.0102 7 6 6.2942 -0.0025 1.4304 8 6 7.8012 -0.0030 1.4246 9 8 8.4036 -0.0019 0.3720 10 7 8.4796 -0.0058 2.5892 11 6 9.9445 -0.0069 2.5836 12 6 10.4523 -0.0095 4.0025 13 8 9.6676 -0.0098 4.9274 14 7 11.7783 -0.0103 4.2438 15 6 12.2402 -0.0132 5.5346 16 1 11.5832 -0.2993 6.3426 17 6 13.5536 0.3521 5.8032 18 7 14.2217 1.0840 4.9401 19 14 14.3697 -0.1971 7.3912 20 1 13.4110 -1.0058 8.1865 21 1 15.5659 -1.0181 7.0749 22 1 14.7808 0.9956 8.1747 23 6 12.7260 -0.0093 3.1266 24 6 12.9377 1.3720 2.6640 25 7 13.1007 2.4412 2.3059 26 6 3.5806 -1.1970 0.0009 27 6 2.1983 -1.1971 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6581 2.1325 -0.0004 32 1 4.1204 2.1326 0.0001 33 1 6.1401 -0.8887 -0.5271 34 1 6.1400 0.8912 -0.5237 35 1 5.9328 0.8865 1.9472 36 1 5.9329 -0.8935 1.9439 37 1 7.9978 -0.0071 3.4311 38 1 10.3052 -0.8961 2.0667 39 1 10.3065 0.8838 2.0702 40 1 15.1385 1.3393 5.1279 41 1 13.6755 -0.4321 3.4552 42 1 12.3250 -0.6089 2.3093 43 1 4.1206 -2.1323 0.0011 44 1 1.6583 -2.1324 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126549095.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:49 Heat of formation + Delta-G solvation = -23.762714 kcal Electronic energy + Delta-G solvation = -26219.139495 eV Core-core repulsion = 22329.422862 eV Total energy + Delta-G solvation = -3889.716633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.98726 -39.47900 -38.65684 -35.96326 -34.81432 -34.51004 -33.89777 -32.03030 -31.46667 -31.12464 -28.46353 -27.53726 -26.73812 -24.61169 -23.38514 -22.92357 -20.84708 -20.11995 -19.57043 -18.08239 -17.41183 -16.54384 -16.21619 -16.03973 -15.92628 -15.49850 -15.28825 -15.18188 -14.59177 -14.27345 -14.23691 -14.03290 -13.62643 -13.54769 -13.15823 -13.07616 -12.90627 -12.62147 -12.54024 -12.39881 -12.22548 -11.88720 -11.73275 -11.67200 -11.36814 -11.33131 -11.22904 -11.19661 -10.95674 -10.64880 -10.46815 -10.41376 -9.77325 -9.39701 -9.12506 -8.86997 -8.84589 -8.67498 -8.19290 -6.62112 -4.12378 1.10739 1.20333 2.79524 3.00193 3.14570 3.20210 3.28320 3.42682 3.56268 3.70536 3.90373 4.03772 4.53961 4.57554 4.64925 4.71361 4.79138 4.81234 4.90922 4.93813 5.10722 5.13598 5.17403 5.26864 5.31110 5.41239 5.45732 5.49748 5.54515 5.68707 5.72001 5.84401 5.86408 5.92133 6.02387 6.06510 6.21968 6.37494 6.41010 6.47721 6.57711 6.81648 7.36303 7.70914 7.75925 8.12823 8.40537 8.67505 8.83937 9.04628 9.53365 10.43620 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.025574 B = 0.001962 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.584218 B =14269.764153 C =14855.847910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.095 4.095 3 C -0.119 4.119 4 C -0.112 4.112 5 C -0.085 4.085 6 C -0.065 4.065 7 C -0.133 4.133 8 C 0.511 3.489 9 O -0.549 6.549 10 N -0.710 5.710 11 C 0.103 3.897 12 C 0.444 3.556 13 O -0.574 6.574 14 N -0.433 5.433 15 C -0.316 4.316 16 H 0.111 0.889 17 C 0.033 3.967 18 N -0.872 5.872 19 Si 0.929 3.071 20 H -0.266 1.266 21 H -0.278 1.278 22 H -0.282 1.282 23 C 0.218 3.782 24 C 0.242 3.758 25 N -0.467 5.467 26 C -0.112 4.112 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.411 0.589 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.275 0.725 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.123 0.877 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.184 -5.938 -9.093 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.095 4.095 3 C -0.137 4.137 4 C -0.130 4.130 5 C -0.085 4.085 6 C -0.102 4.102 7 C -0.173 4.173 8 C 0.297 3.703 9 O -0.427 6.427 10 N -0.365 5.365 11 C -0.024 4.024 12 C 0.232 3.768 13 O -0.458 6.458 14 N -0.152 5.152 15 C -0.443 4.443 16 H 0.129 0.871 17 C -0.171 4.171 18 N -0.510 5.510 19 Si 0.756 3.244 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.208 1.208 23 C 0.091 3.909 24 C -0.076 4.076 25 N -0.147 5.147 26 C -0.130 4.130 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.249 0.751 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.086 0.914 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.141 0.859 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -18.678 -4.283 -9.882 21.561 hybrid contribution 0.503 -0.395 1.366 1.508 sum -18.175 -4.679 -8.516 20.609 Atomic orbital electron populations 1.20782 0.91383 1.02701 1.02186 1.19920 0.95994 0.93315 1.00252 1.21025 0.94199 0.97476 1.01047 1.21095 0.94107 0.97792 1.00000 1.19937 0.95657 0.93195 0.99678 1.20336 0.89770 1.04597 0.95525 1.21625 0.91768 1.04890 0.99001 1.20633 0.90078 0.76082 0.83501 1.90691 1.70753 1.50180 1.31082 1.45766 1.06708 1.74438 1.09545 1.21095 0.81246 1.03299 0.96790 1.19974 0.83240 0.83901 0.89699 1.90525 1.54585 1.55280 1.45372 1.43584 1.02708 1.62857 1.06063 1.19779 0.96141 1.44715 0.83676 0.87105 1.25335 0.97277 0.94824 0.99683 1.69876 1.12343 1.31429 1.37370 0.85812 0.79027 0.78649 0.80955 1.19012 1.20328 1.20805 1.18810 0.97833 0.85419 0.88888 1.29352 0.92062 0.95442 0.90762 1.81052 1.09670 1.11594 1.12364 1.21080 0.94089 0.97743 1.00082 1.21020 0.94198 0.97454 1.01098 0.91328 0.91627 0.91628 0.86217 0.85939 0.90086 0.90116 0.88722 0.88678 0.75087 0.89480 0.89806 0.91436 0.85154 0.89466 0.85934 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.09 -0.80 5.88 -104.63 -0.62 -1.41 16 3 C -0.12 -1.04 9.70 -39.58 -0.38 -1.42 16 4 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 5 C -0.08 -0.83 5.13 -104.62 -0.54 -1.36 16 6 C -0.06 -0.67 4.63 -27.88 -0.13 -0.80 16 7 C -0.13 -1.41 5.68 -27.88 -0.16 -1.57 16 8 C 0.51 7.50 7.83 -10.98 -0.09 7.41 16 9 O -0.55 -9.75 15.98 5.56 0.09 -9.66 16 10 N -0.71 -11.17 5.53 -61.47 -0.34 -11.51 16 11 C 0.10 1.82 4.76 -5.19 -0.02 1.79 16 12 C 0.44 9.49 7.63 -10.99 -0.08 9.41 16 13 O -0.57 -13.77 15.32 5.54 0.08 -13.68 16 14 N -0.43 -9.63 2.60 -117.93 -0.31 -9.94 16 15 C -0.32 -7.79 9.32 -14.93 -0.14 -7.92 16 16 H 0.11 2.87 7.39 -52.48 -0.39 2.49 16 17 C 0.03 0.79 4.86 -17.47 -0.08 0.71 16 18 N -0.87 -21.33 9.48 55.50 0.53 -20.81 16 19 Si 0.93 18.91 29.60 -169.99 -5.03 13.88 16 20 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 C 0.22 4.18 4.91 -6.83 -0.03 4.14 16 24 C 0.24 5.29 12.96 -20.65 -0.27 5.02 16 25 N -0.47 -11.10 18.56 42.28 0.78 -10.31 16 26 C -0.11 -1.02 9.70 -39.58 -0.38 -1.40 16 27 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 32 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.41 6.26 7.44 -40.82 -0.30 5.95 16 38 H 0.09 1.37 7.42 -51.93 -0.39 0.98 16 39 H 0.08 1.55 7.51 -51.93 -0.39 1.16 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 41 H 0.13 2.53 6.46 -51.93 -0.34 2.20 16 42 H 0.09 1.28 6.68 -51.93 -0.35 0.94 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -31.35 380.94 -7.71 -39.05 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.92 Total: 7.81 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -3.34 Total: 9.43 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.66 Total: -52.57 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.17 Total: -23.35 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.35 -7.71 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126549095.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.291 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds