Wall clock time and date at job start Tue Mar 31 2020 04:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47330 * 30.27453 * 3 2 1 5 5 C 1.37101 * 120.00135 * 270.25623 * 4 3 2 6 6 H 1.07999 * 120.00093 * 149.26601 * 5 4 3 7 7 C 1.38953 * 119.99982 * 329.27677 * 5 4 3 8 8 N 1.31413 * 119.99642 * 320.90167 * 7 5 4 9 9 Si 1.86796 * 120.00203 * 140.90384 * 7 5 4 10 10 H 1.48503 * 109.46863 * 179.97438 * 9 7 5 11 11 H 1.48495 * 109.47288 * 59.99601 * 9 7 5 12 12 H 1.48504 * 109.47084 * 299.99695 * 9 7 5 13 13 C 1.34776 * 119.99893 * 90.25819 * 4 3 2 14 14 O 1.21296 * 119.99888 * 184.47125 * 13 4 3 15 15 C 1.50696 * 120.00088 * 4.47113 * 13 4 3 16 16 H 1.09002 * 109.50874 * 37.03281 * 15 13 4 17 17 C 1.53093 * 109.50709 * 276.94224 * 15 13 4 18 18 N 1.47020 * 109.25510 * 183.26324 * 17 15 13 19 19 C 1.46907 * 110.99774 * 182.35426 * 18 17 15 20 20 C 1.50693 * 109.47068 * 170.27211 * 19 18 17 21 21 C 1.38234 * 119.99986 * 269.72464 * 20 19 18 22 22 C 1.38243 * 119.99786 * 179.81016 * 21 20 19 23 23 C 1.38233 * 119.99923 * 0.39809 * 22 21 20 24 24 C 1.38232 * 120.00445 * 359.85891 * 23 22 21 25 25 C 1.38240 * 119.99989 * 90.00148 * 20 19 18 26 26 C 1.47014 * 110.79336 * 58.55214 * 18 17 15 27 27 C 1.53102 * 109.25238 * 301.41017 * 26 18 17 28 28 O 1.43010 * 109.26045 * 56.84884 * 27 26 18 29 29 H 1.09002 * 109.47049 * 270.26938 * 3 2 1 30 30 H 1.09011 * 109.47192 * 150.27435 * 3 2 1 31 31 H 0.97007 * 120.00272 * 357.96188 * 8 7 5 32 32 H 1.08995 * 109.51109 * 303.15264 * 17 15 13 33 33 H 1.09003 * 109.50589 * 63.28559 * 17 15 13 34 34 H 1.09000 * 109.46711 * 290.27039 * 19 18 17 35 35 H 1.08998 * 109.47095 * 50.27294 * 19 18 17 36 36 H 1.07999 * 120.00397 * 359.97438 * 21 20 19 37 37 H 1.07999 * 119.99810 * 180.23009 * 22 21 20 38 38 H 1.08002 * 119.99698 * 179.82774 * 23 22 21 39 39 H 1.07997 * 120.00577 * 179.97438 * 24 23 22 40 40 H 1.07997 * 119.99876 * 359.97438 * 25 20 19 41 41 H 1.08993 * 109.51007 * 181.47326 * 26 18 17 42 42 H 1.08996 * 109.50252 * 61.33661 * 26 18 17 43 43 H 1.08999 * 109.50609 * 296.90514 * 27 26 18 44 44 H 1.09003 * 109.50153 * 176.78127 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0968 -1.1919 -0.6963 5 6 3.3209 -2.3501 0.0023 6 1 3.1925 -3.3066 -0.4824 7 6 3.7129 -2.2933 1.3342 8 7 4.5638 -1.3733 1.7299 9 14 3.0305 -3.5245 2.5621 10 1 3.6016 -3.2521 3.9056 11 1 3.3960 -4.9001 2.1389 12 1 1.5517 -3.4003 2.6178 13 6 3.3264 -1.1506 -2.0237 14 8 3.6531 -2.1584 -2.6144 15 6 3.1773 0.1478 -2.7741 16 1 3.5284 0.9706 -2.1513 17 6 1.7041 0.3672 -3.1282 18 7 1.5751 1.5946 -3.9271 19 6 0.1673 1.8726 -4.2416 20 6 0.0499 3.2472 -4.8477 21 6 -0.1610 4.3453 -4.0348 22 6 -0.2647 5.6068 -4.5905 23 6 -0.1658 5.7693 -5.9597 24 6 0.0397 4.6706 -6.7730 25 6 0.1474 3.4095 -6.2171 26 6 2.3814 1.5064 -5.1533 27 6 3.8477 1.2759 -4.7779 28 8 3.9496 0.0957 -3.9767 29 1 2.9713 -0.0040 1.0277 30 1 2.9709 0.8933 -0.5096 31 1 4.9410 -0.7526 1.0869 32 1 1.3380 -0.4819 -3.7052 33 1 1.1204 0.4649 -2.2128 34 1 -0.1999 1.1304 -4.9504 35 1 -0.4250 1.8266 -3.3278 36 1 -0.2420 4.2179 -2.9654 37 1 -0.4258 6.4652 -3.9551 38 1 -0.2497 6.7545 -6.3940 39 1 0.1166 4.7974 -7.8428 40 1 0.3081 2.5512 -6.8524 41 1 2.2914 2.4356 -5.7158 42 1 2.0268 0.6753 -5.7629 43 1 4.2178 2.1320 -4.2138 44 1 4.4403 1.1528 -5.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132386337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:46 Heat of formation + Delta-G solvation = 4.877544 kcal Electronic energy + Delta-G solvation = -28354.124794 eV Core-core repulsion = 24465.650096 eV Total energy + Delta-G solvation = -3888.474698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.26229 -39.37709 -38.20884 -36.35296 -35.69062 -34.80612 -32.33453 -31.78462 -31.21047 -30.86755 -28.11426 -27.66379 -25.53475 -24.30741 -23.80545 -22.71112 -21.46978 -20.54999 -19.65005 -18.30103 -17.27724 -16.88972 -16.66951 -16.29583 -16.06917 -15.54789 -15.41765 -14.80732 -14.73745 -14.47980 -14.29617 -13.92127 -13.82562 -13.61807 -13.57767 -13.46067 -13.07349 -12.71535 -12.58831 -12.45627 -12.12377 -11.99544 -11.73232 -11.55213 -11.41535 -11.20866 -11.17431 -11.07370 -10.88178 -10.58765 -10.29280 -10.23610 -9.53806 -9.10214 -9.09413 -9.01202 -8.58531 -8.46913 -8.09896 -6.94579 -4.10128 1.12151 1.21339 2.98111 3.12955 3.18565 3.32089 3.35820 3.48290 3.51165 3.77306 3.97421 4.21255 4.42577 4.51227 4.63009 4.66883 4.80359 4.87585 4.90232 4.95624 5.03369 5.07295 5.12383 5.19585 5.28606 5.30364 5.41432 5.46989 5.51094 5.54901 5.68084 5.74766 5.80367 5.83262 5.85621 5.94947 6.07289 6.24724 6.31204 6.43374 6.75191 6.83398 6.83602 7.22058 7.66079 7.94714 7.99462 8.34028 8.69696 9.11694 9.56960 10.34201 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019572 B = 0.003236 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.302723 B = 8651.087997 C = 9480.825286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.209 3.791 3 C 0.176 3.824 4 N -0.440 5.440 5 C -0.426 4.426 6 H 0.095 0.905 7 C 0.023 3.977 8 N -0.845 5.845 9 Si 1.060 2.940 10 H -0.278 1.278 11 H -0.279 1.279 12 H -0.283 1.283 13 C 0.468 3.532 14 O -0.538 6.538 15 C 0.081 3.919 16 H 0.081 0.919 17 C 0.028 3.972 18 N -0.527 5.527 19 C 0.091 3.909 20 C -0.073 4.073 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.122 4.122 25 C -0.115 4.115 26 C 0.013 3.987 27 C 0.062 3.938 28 O -0.353 6.353 29 H 0.133 0.867 30 H 0.106 0.894 31 H 0.279 0.721 32 H 0.050 0.950 33 H 0.088 0.912 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 14.844 -11.398 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.110 4.110 3 C 0.048 3.952 4 N -0.163 5.163 5 C -0.551 4.551 6 H 0.113 0.887 7 C -0.188 4.188 8 N -0.477 5.477 9 Si 0.885 3.115 10 H -0.203 1.203 11 H -0.205 1.205 12 H -0.209 1.209 13 C 0.256 3.744 14 O -0.416 6.416 15 C 0.019 3.981 16 H 0.099 0.901 17 C -0.100 4.100 18 N -0.252 5.252 19 C -0.036 4.036 20 C -0.073 4.073 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.115 4.115 27 C -0.015 4.015 28 O -0.271 6.271 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.150 14.077 -9.873 18.621 hybrid contribution -0.121 0.154 -2.051 2.060 sum -7.272 14.231 -11.924 19.939 Atomic orbital electron populations 1.81054 1.13144 1.08762 1.09622 1.30131 0.95992 0.92525 0.92323 1.19285 0.80628 0.91287 1.03986 1.43372 1.56584 1.10913 1.05457 1.20165 1.53264 0.85598 0.96072 0.88737 1.26352 0.93052 1.01810 0.97568 1.70859 1.17829 1.18426 1.40566 0.83634 0.76679 0.75605 0.75601 1.20264 1.20494 1.20872 1.19770 0.82543 0.88989 0.83143 1.90575 1.48765 1.35430 1.66859 1.22107 0.90304 0.98063 0.87591 0.90135 1.22773 0.97239 0.91018 0.99014 1.62243 1.08553 1.35186 1.19233 1.21079 0.89413 0.92850 1.00306 1.19728 0.99273 0.95000 0.93345 1.21073 0.98587 0.92005 0.99896 1.21166 1.00327 0.97238 0.95165 1.21142 1.00399 0.98659 0.93897 1.21099 1.00539 0.92674 0.99706 1.21082 1.00355 0.97437 0.94484 1.22916 0.94973 1.01703 0.91895 1.22692 0.94623 0.88592 0.95632 1.88136 1.67772 1.38078 1.33089 0.84999 0.87617 0.91003 0.93218 0.89362 0.93670 0.89589 0.85868 0.86084 0.86283 0.86204 0.86366 0.89288 0.93857 0.92261 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.89 18.42 42.15 0.78 -8.11 16 2 C 0.21 3.98 13.29 -20.76 -0.28 3.70 16 3 C 0.18 3.29 4.99 -6.83 -0.03 3.26 16 4 N -0.44 -10.16 2.37 -117.93 -0.28 -10.44 16 5 C -0.43 -11.09 8.84 -14.93 -0.13 -11.22 16 6 H 0.09 2.70 7.72 -52.49 -0.41 2.29 16 7 C 0.02 0.57 4.50 -17.47 -0.08 0.49 16 8 N -0.85 -21.10 12.33 55.50 0.68 -20.42 16 9 Si 1.06 22.45 30.05 -169.99 -5.11 17.34 16 10 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 12 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 13 C 0.47 10.96 6.86 -10.99 -0.08 10.88 16 14 O -0.54 -14.96 16.42 -13.20 -0.22 -15.18 16 15 C 0.08 1.50 2.46 -27.84 -0.07 1.43 16 16 H 0.08 1.33 6.29 -51.93 -0.33 1.00 16 17 C 0.03 0.47 4.84 -3.71 -0.02 0.45 16 18 N -0.53 -7.21 4.72 -235.75 -1.11 -8.32 16 19 C 0.09 1.10 5.12 -4.98 -0.03 1.08 16 20 C -0.07 -0.80 4.89 -104.63 -0.51 -1.31 16 21 C -0.10 -1.02 9.70 -39.58 -0.38 -1.41 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.12 -1.13 7.93 -39.58 -0.31 -1.44 16 26 C 0.01 0.16 5.27 -3.71 -0.02 0.15 16 27 C 0.06 0.83 7.01 37.21 0.26 1.09 16 28 O -0.35 -6.61 10.11 -53.97 -0.55 -7.15 16 29 H 0.13 2.58 5.67 -51.93 -0.29 2.29 16 30 H 0.11 1.60 5.85 -51.92 -0.30 1.29 16 31 H 0.28 6.88 7.87 -40.82 -0.32 6.56 16 32 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.09 1.49 5.02 -51.93 -0.26 1.23 16 34 H 0.05 0.54 8.06 -51.93 -0.42 0.12 16 35 H 0.09 1.08 7.99 -51.93 -0.41 0.66 16 36 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 1.04 8.00 -52.49 -0.42 0.62 16 41 H 0.09 0.96 6.01 -51.93 -0.31 0.65 16 42 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 364.85 15.07 5.50 5.50 Total: -1.00 -31.22 364.85 -8.83 -40.05 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.66 Total: 4.01 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.87 Total: 2.73 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.07 Total: -47.29 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.76 Total: -22.33 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.11 Total: 17.34 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.22 -8.83 -40.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132386337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.923 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds