Wall clock time and date at job start Tue Mar 31 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00313 * 2 1 4 4 H 1.48505 * 109.47660 * 270.00657 * 3 2 1 5 5 H 1.48501 * 109.47247 * 30.00832 * 3 2 1 6 6 H 1.48507 * 109.47323 * 150.00432 * 3 2 1 7 7 C 1.38817 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99816 * 197.35605 * 7 2 1 9 9 N 1.36936 * 119.99703 * 17.34735 * 7 2 1 10 10 C 1.46928 * 120.63286 * 27.69222 * 9 7 2 11 11 C 1.53182 * 108.77853 * 126.38651 * 10 9 7 12 12 C 1.53044 * 109.31506 * 54.63418 * 11 10 9 13 13 C 1.53002 * 109.46101 * 178.61669 * 12 11 10 14 14 N 1.46500 * 109.47118 * 184.99971 * 13 12 11 15 15 C 1.34217 * 119.36627 * 89.99684 * 14 13 12 16 16 O 1.21580 * 118.59092 * 359.97438 * 15 14 13 17 17 N 1.34407 * 122.81640 * 180.02562 * 15 14 13 18 18 H 0.97006 * 119.68402 * 179.97438 * 17 15 14 19 19 C 1.38738 * 120.63640 * 359.97438 * 17 15 14 20 20 C 1.38656 * 121.59041 * 179.97438 * 19 17 15 21 21 C 1.38056 * 119.75590 * 180.02562 * 20 19 17 22 22 C 1.38652 * 120.65055 * 0.02562 * 21 20 19 23 23 C 1.37910 * 120.41650 * 359.97438 * 22 21 20 24 24 C 1.39289 * 119.50251 * 359.95576 * 23 22 21 25 25 C 1.35070 * 119.36647 * 269.72636 * 14 13 12 26 26 O 1.21587 * 120.86012 * 0.02562 * 25 14 13 27 27 C 1.53037 * 109.53774 * 298.63545 * 12 11 10 28 28 C 1.46931 * 120.63009 * 207.68288 * 9 7 2 29 29 H 0.97003 * 119.99445 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.58291 * 6.59348 * 10 9 7 31 31 H 1.08995 * 109.58546 * 246.17682 * 10 9 7 32 32 H 1.09010 * 109.50007 * 294.68260 * 11 10 9 33 33 H 1.08998 * 109.50422 * 174.58812 * 11 10 9 34 34 H 1.09001 * 109.45914 * 58.65452 * 12 11 10 35 35 H 1.09000 * 109.46893 * 304.99561 * 13 12 11 36 36 H 1.08994 * 109.47093 * 64.99889 * 13 12 11 37 37 H 1.07998 * 120.12233 * 0.02562 * 20 19 17 38 38 H 1.08005 * 119.68014 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.79609 * 179.97438 * 22 21 20 40 40 H 1.08002 * 120.25017 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.50327 * 181.31501 * 27 12 11 42 42 H 1.09007 * 109.50161 * 301.38056 * 27 12 11 43 43 H 1.08995 * 109.58326 * 113.82730 * 28 9 7 44 44 H 1.08996 * 109.70037 * 353.47314 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4479 2.6526 0.7002 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0534 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2278 -2.3340 -1.2756 11 6 0.5008 -3.3034 -2.4299 12 6 0.8188 -4.6889 -1.8629 13 6 1.0582 -5.6680 -3.0140 14 7 1.2446 -7.0179 -2.4761 15 6 0.1768 -7.8143 -2.3122 16 8 -0.9199 -7.3872 -2.6172 17 7 0.2678 -9.0635 -1.8245 18 1 -0.5343 -9.5998 -1.7246 19 6 1.4979 -9.5933 -1.4625 20 6 1.6145 -10.8791 -0.9569 21 6 2.8576 -11.3681 -0.6083 22 6 3.9924 -10.5857 -0.7580 23 6 3.8960 -9.3045 -1.2592 24 6 2.6479 -8.7997 -1.6162 25 6 2.4884 -7.4389 -2.1597 26 8 3.4511 -6.7128 -2.3154 27 6 2.0745 -4.6094 -0.9917 28 6 1.8193 -3.6548 0.1790 29 1 -0.4849 0.8401 0.0004 30 1 0.0984 -1.3254 -1.6682 31 1 -0.6743 -2.6408 -0.7464 32 1 1.3495 -2.9452 -3.0128 33 1 -0.3799 -3.3653 -3.0691 34 1 -0.0203 -5.0358 -1.2599 35 1 0.1980 -5.6592 -3.6833 36 1 1.9503 -5.3700 -3.5648 37 1 0.7362 -11.4958 -0.8363 38 1 2.9471 -12.3700 -0.2150 39 1 4.9580 -10.9819 -0.4805 40 1 4.7817 -8.6972 -1.3744 41 1 2.3138 -5.6008 -0.6071 42 1 2.9085 -4.2395 -1.5882 43 1 1.0470 -4.0694 0.8268 44 1 2.7394 -3.5197 0.7476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154007471.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:46:29 Heat of formation + Delta-G solvation = -8.408446 kcal Electronic energy + Delta-G solvation = -28605.288888 eV Core-core repulsion = 24716.238066 eV Total energy + Delta-G solvation = -3889.050822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39670 -39.43511 -39.12470 -37.47890 -35.81952 -35.21259 -33.21072 -31.77037 -30.74798 -30.02944 -29.64150 -27.39403 -24.91779 -24.17619 -23.52041 -23.00640 -22.01681 -21.15339 -19.85105 -19.03284 -18.82550 -18.24707 -17.04529 -16.49508 -16.47138 -15.99054 -15.38385 -15.02209 -14.79789 -14.47874 -14.39195 -14.28755 -13.93411 -13.83364 -13.45655 -13.35057 -12.96143 -12.54036 -12.41536 -12.30482 -11.84712 -11.57115 -11.39656 -11.23359 -10.98761 -10.94241 -10.67939 -10.63000 -10.42929 -10.18101 -10.06189 -9.91921 -9.71429 -9.55989 -9.41113 -9.20274 -8.60934 -8.39207 -6.58902 -5.71213 -3.12806 0.33613 0.76418 1.91649 1.95354 2.70721 2.81578 3.43132 3.49615 3.51153 3.53491 3.91257 4.16484 4.47322 4.56419 4.73550 4.80791 4.99458 5.10664 5.23997 5.30851 5.35135 5.43381 5.46347 5.54365 5.58423 5.68406 5.86236 5.90764 5.96222 6.05183 6.18841 6.27351 6.28092 6.35791 6.44447 6.60669 6.69689 6.76045 6.88536 6.92156 7.09787 7.13169 7.37882 7.46187 7.74033 7.81392 7.87180 8.52962 9.29427 9.93183 10.50706 11.37291 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.021629 B = 0.003078 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.238053 B = 9093.668104 C = 9779.964505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.131 4.131 12 C -0.090 4.090 13 C 0.112 3.888 14 N -0.550 5.550 15 C 0.703 3.297 16 O -0.537 6.537 17 N -0.648 5.648 18 H 0.433 0.567 19 C 0.200 3.800 20 C -0.169 4.169 21 C -0.050 4.050 22 C -0.159 4.159 23 C -0.013 4.013 24 C -0.194 4.194 25 C 0.560 3.440 26 O -0.479 6.479 27 C -0.119 4.119 28 C 0.147 3.853 29 H 0.253 0.747 30 H 0.089 0.911 31 H 0.017 0.983 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.145 0.855 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.012 0.988 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.915 -26.347 -4.261 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.171 4.171 12 C -0.110 4.110 13 C -0.008 4.008 14 N -0.294 5.294 15 C 0.405 3.595 16 O -0.410 6.410 17 N -0.294 5.294 18 H 0.274 0.726 19 C 0.099 3.901 20 C -0.190 4.190 21 C -0.069 4.069 22 C -0.178 4.178 23 C -0.033 4.033 24 C -0.200 4.200 25 C 0.351 3.649 26 O -0.351 6.351 27 C -0.159 4.159 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.035 0.965 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.116 0.884 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.057 0.943 42 H 0.084 0.916 43 H 0.030 0.970 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.778 -25.345 -4.568 26.029 hybrid contribution -0.043 0.454 0.154 0.482 sum 3.735 -24.891 -4.414 25.554 Atomic orbital electron populations 1.70046 1.05232 1.25370 1.54226 1.25032 0.95283 0.98356 1.01151 0.86285 0.79091 0.83713 0.77670 1.21475 1.21845 1.20477 1.19220 0.92697 0.84931 1.41014 0.91716 1.44060 1.35845 1.01337 1.50238 1.20750 0.88566 0.98164 0.87798 1.22171 1.00240 0.94438 1.00238 1.21399 0.98951 0.95189 0.95416 1.22144 1.04052 0.76850 0.97728 1.46239 1.06633 1.16924 1.59602 1.15625 0.84881 0.80345 0.78684 1.91066 1.24409 1.72155 1.53364 1.42816 1.09416 1.14294 1.62906 0.72642 1.18058 0.84413 0.93409 0.94187 1.20619 0.99397 0.93626 1.05333 1.21237 0.91482 0.99651 0.94502 1.21161 0.99374 0.94277 1.02988 1.21085 0.95821 0.94910 0.91439 1.19575 0.94208 0.94625 1.11593 1.18339 0.82534 0.86730 0.77278 1.90868 1.38035 1.56181 1.49979 1.22049 0.96818 0.98333 0.98652 1.20879 0.97236 0.87002 0.92850 0.93713 0.89305 0.96530 0.92342 0.92984 0.91532 0.88580 0.88440 0.84426 0.84685 0.84683 0.83707 0.94302 0.91631 0.97025 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.02 11.19 55.49 0.62 -26.40 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 22.34 29.59 -169.99 -5.03 17.31 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.25 -7.12 9.59 -15.06 -0.14 -7.27 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -15.66 3.00 -172.32 -0.52 -16.18 16 10 C 0.17 4.33 5.31 -3.71 -0.02 4.31 16 11 C -0.13 -2.63 5.36 -26.61 -0.14 -2.77 16 12 C -0.09 -1.66 2.36 -90.58 -0.21 -1.88 16 13 C 0.11 1.75 4.64 -4.04 -0.02 1.74 16 14 N -0.55 -8.01 2.44 -122.10 -0.30 -8.30 16 15 C 0.70 9.61 8.33 -87.75 -0.73 8.88 16 16 O -0.54 -8.76 16.49 5.30 0.09 -8.67 16 17 N -0.65 -6.25 5.35 -14.38 -0.08 -6.33 16 18 H 0.43 2.90 8.79 -40.82 -0.36 2.54 16 19 C 0.20 1.81 6.67 -83.70 -0.56 1.25 16 20 C -0.17 -1.01 9.94 -39.49 -0.39 -1.40 16 21 C -0.05 -0.26 10.02 -39.50 -0.40 -0.65 16 22 C -0.16 -0.98 10.03 -39.55 -0.40 -1.38 16 23 C -0.01 -0.12 9.67 -39.31 -0.38 -0.50 16 24 C -0.19 -2.15 5.88 -104.90 -0.62 -2.76 16 25 C 0.56 7.97 6.18 -12.40 -0.08 7.89 16 26 O -0.48 -7.89 14.45 5.29 0.08 -7.81 16 27 C -0.12 -2.35 4.14 -26.61 -0.11 -2.46 16 28 C 0.15 3.36 6.51 -3.71 -0.02 3.34 16 29 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.09 2.45 6.04 -51.93 -0.31 2.14 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 1.18 8.14 -51.92 -0.42 0.75 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.10 1.44 7.30 -51.93 -0.38 1.06 16 36 H 0.10 1.50 7.40 -51.93 -0.38 1.12 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.14 0.31 8.06 -52.48 -0.42 -0.11 16 39 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 40 H 0.15 1.26 7.80 -52.49 -0.41 0.85 16 41 H 0.04 0.72 5.96 -51.93 -0.31 0.41 16 42 H 0.06 1.37 8.05 -51.93 -0.42 0.95 16 43 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.05 1.18 7.94 -51.93 -0.41 0.76 16 LS Contribution 353.72 15.07 5.33 5.33 Total: -1.00 -34.46 353.72 -10.03 -44.49 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -5.92 Total: 0.31 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -4.31 Total: 6.25 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.27 Total: -57.21 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: 0.16 Total: -16.48 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.46 -10.03 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154007471.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.083 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds