Wall clock time and date at job start Tue Mar 31 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86804 * 119.99732 * 2 1 4 4 H 1.48504 * 109.47169 * 270.00079 * 3 2 1 5 5 H 1.48491 * 109.47208 * 29.99953 * 3 2 1 6 6 H 1.48497 * 109.46961 * 150.00480 * 3 2 1 7 7 C 1.38944 * 120.00324 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00368 * 180.02562 * 7 2 1 9 9 N 1.37108 * 119.99846 * 0.02562 * 7 2 1 10 10 C 1.34771 * 119.99856 * 179.97438 * 9 7 2 11 11 O 1.21299 * 120.00108 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00066 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47245 * 180.02562 * 12 10 9 14 14 C 1.46846 * 111.00204 * 66.04321 * 13 12 10 15 15 C 1.53032 * 109.52260 * 185.84105 * 14 13 12 16 16 C 1.53124 * 109.28012 * 300.82015 * 15 14 13 17 17 C 1.53119 * 109.15841 * 57.65244 * 16 15 14 18 18 H 1.09003 * 109.50618 * 62.33025 * 17 16 15 19 19 C 1.50700 * 109.50339 * 182.40666 * 17 16 15 20 20 N 1.30800 * 126.24609 * 59.68998 * 19 17 16 21 21 N 1.28688 * 110.29185 * 179.88085 * 20 19 17 22 22 C 1.32298 * 109.47973 * 0.38849 * 21 20 19 23 23 C 1.40818 * 133.46856 * 179.74175 * 22 21 20 24 24 C 1.36020 * 119.23013 * 180.02562 * 23 22 21 25 25 C 1.40547 * 119.75013 * 0.02562 * 24 23 22 26 26 C 1.34959 * 120.36352 * 359.97438 * 25 24 23 27 27 N 1.36060 * 126.24769 * 240.00097 * 19 17 16 28 28 C 1.46846 * 110.99617 * 190.25426 * 13 12 10 29 29 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99511 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47121 * 59.99977 * 12 10 9 32 32 H 1.09004 * 109.46728 * 300.00135 * 12 10 9 33 33 H 1.09001 * 109.45990 * 305.85570 * 14 13 12 34 34 H 1.08997 * 109.46419 * 65.82250 * 14 13 12 35 35 H 1.08999 * 109.50710 * 60.75864 * 15 14 13 36 36 H 1.08996 * 109.50945 * 180.88041 * 15 14 13 37 37 H 1.08998 * 109.52523 * 177.55876 * 16 15 14 38 38 H 1.08999 * 109.52008 * 297.75553 * 16 15 14 39 39 H 1.07998 * 120.38548 * 0.02562 * 23 22 21 40 40 H 1.08004 * 120.12789 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.82359 * 179.97438 * 25 24 23 42 42 H 1.07993 * 119.74815 * 180.02562 * 26 25 24 43 43 H 1.08996 * 109.46231 * 294.17554 * 28 13 12 44 44 H 1.09004 * 109.46418 * 54.14394 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3907 -0.0016 10 6 1.9973 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0031 12 6 1.2438 -4.8630 -0.0044 13 7 2.1985 -5.9795 -0.0047 14 6 2.9626 -6.0189 1.2487 15 6 4.0429 -7.0988 1.1553 16 6 3.3810 -8.4550 0.8965 17 6 2.5524 -8.3728 -0.3885 18 1 3.2089 -8.1583 -1.2318 19 6 1.8499 -9.6859 -0.6192 20 7 0.9927 -10.2566 0.1873 21 7 0.5807 -11.3681 -0.3133 22 6 1.1695 -11.5715 -1.4804 23 6 1.0961 -12.6034 -2.4358 24 6 1.8485 -12.5173 -3.5657 25 6 2.6853 -11.4055 -3.7633 26 6 2.7454 -10.4240 -2.8389 27 7 1.9961 -10.4972 -1.7016 28 6 1.5153 -7.2559 -0.2504 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0024 31 1 0.6175 -4.9197 -0.8947 32 1 0.6168 -4.9217 0.8853 33 1 3.4316 -5.0497 1.4187 34 1 2.2912 -6.2474 2.0764 35 1 4.7228 -6.8636 0.3365 36 1 4.5998 -7.1385 2.0914 37 1 4.1493 -9.2203 0.7861 38 1 2.7306 -8.7085 1.7336 39 1 0.4500 -13.4534 -2.2733 40 1 1.8038 -13.3007 -4.3078 41 1 3.2835 -11.3361 -4.6598 42 1 3.3914 -9.5740 -3.0011 43 1 0.8506 -7.4786 0.5843 44 1 0.9331 -7.1852 -1.1692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155792026.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:38 Heat of formation + Delta-G solvation = 76.496657 kcal Electronic energy + Delta-G solvation = -27419.148189 eV Core-core repulsion = 23566.071880 eV Total energy + Delta-G solvation = -3853.076309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.80157 -39.31197 -38.47573 -37.63686 -34.68037 -33.96350 -33.25243 -31.84067 -31.21250 -31.05724 -28.75700 -27.46200 -24.68660 -24.57103 -24.12281 -23.50611 -22.77159 -21.46274 -19.55257 -19.19214 -18.35720 -17.85023 -17.39096 -16.76702 -16.28507 -16.00648 -15.59550 -15.27909 -14.92022 -14.70036 -14.56437 -14.01562 -13.84711 -13.55875 -13.29047 -13.11009 -13.00773 -12.80406 -12.55563 -12.29995 -12.00519 -11.82537 -11.65992 -11.51650 -11.43075 -11.35532 -11.04325 -10.79990 -10.60590 -10.50002 -10.41141 -10.37963 -10.21241 -9.82650 -9.45919 -8.45734 -8.34138 -7.97325 -7.84829 -6.40958 -3.81849 0.25129 0.77537 1.98101 2.45464 2.99251 3.17961 3.26641 3.32153 3.67094 3.87086 3.91769 4.09885 4.15952 4.27618 4.40653 4.43840 4.53715 4.71883 4.84550 4.99190 5.07762 5.13598 5.24980 5.26125 5.37471 5.44159 5.50322 5.57823 5.66350 5.67849 5.73362 5.78832 5.82963 5.92680 5.95922 6.00927 6.01959 6.09752 6.28688 6.44888 6.53374 6.55834 7.28100 7.39866 7.55751 8.07096 8.33036 8.62503 9.18708 9.55422 10.06991 10.76800 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023549 B = 0.002287 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.744041 B =12238.969962 C =12483.894590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.298 4.298 8 H 0.103 0.897 9 N -0.564 5.564 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.047 3.953 13 N -0.514 5.514 14 C 0.049 3.951 15 C -0.111 4.111 16 C -0.108 4.108 17 C 0.010 3.990 18 H 0.095 0.905 19 C 0.160 3.840 20 N -0.243 5.243 21 N -0.290 5.290 22 C 0.186 3.814 23 C -0.079 4.079 24 C -0.090 4.090 25 C -0.141 4.141 26 C 0.070 3.930 27 N -0.389 5.389 28 C 0.067 3.933 29 H 0.271 0.729 30 H 0.392 0.608 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.106 0.894 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.156 0.844 40 H 0.147 0.853 41 H 0.156 0.844 42 H 0.171 0.829 43 H 0.046 0.954 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.781 -23.864 -6.873 25.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.428 4.428 8 H 0.121 0.879 9 N -0.201 5.201 10 C 0.230 3.770 11 O -0.462 6.462 12 C -0.084 4.084 13 N -0.238 5.238 14 C -0.079 4.079 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.011 4.011 18 H 0.113 0.887 19 C -0.103 4.103 20 N -0.082 5.082 21 N -0.136 5.136 22 C -0.063 4.063 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.163 4.163 26 C -0.052 4.052 27 N -0.069 5.069 28 C -0.062 4.062 29 H 0.081 0.919 30 H 0.225 0.775 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.124 0.876 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.173 0.827 40 H 0.165 0.835 41 H 0.174 0.826 42 H 0.189 0.811 43 H 0.064 0.936 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.847 -23.750 -5.852 24.761 hybrid contribution -0.136 0.843 -0.638 1.066 sum 3.711 -22.908 -6.490 24.097 Atomic orbital electron populations 1.69611 1.05938 1.28145 1.50621 1.25261 0.95627 0.99718 0.97386 0.85864 0.79219 0.80867 0.78368 1.20428 1.20963 1.19430 1.19688 0.93333 0.82185 1.47551 0.87904 1.41874 1.09223 1.04591 1.64421 1.19704 0.88387 0.84487 0.84381 1.90480 1.13639 1.86888 1.55161 1.21831 0.93893 0.91031 1.01677 1.61468 1.25269 1.00903 1.36194 1.22309 0.95217 1.01616 0.88722 1.21543 0.98085 0.92914 1.02303 1.21641 0.98663 0.98337 0.96044 1.19623 0.95838 0.84965 1.00712 0.88688 1.24946 1.02711 0.97787 0.84853 1.74219 1.08721 1.02221 1.23056 1.74987 1.22370 1.10932 1.05305 1.22363 0.95049 0.91305 0.97629 1.20282 1.01247 0.96948 0.91600 1.21191 0.94957 0.98195 0.97085 1.20958 1.01546 0.93868 0.99892 1.21763 0.96474 1.01843 0.85146 1.43754 1.30035 1.17533 1.15581 1.21997 0.94196 0.88484 1.01500 0.91880 0.77479 0.89408 0.93245 0.87601 0.95633 0.90766 0.91172 0.92035 0.90875 0.82683 0.83546 0.82640 0.81132 0.93606 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 20.98 29.55 -169.99 -5.02 15.95 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 8 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 10 C 0.45 10.35 7.45 -10.99 -0.08 10.27 16 11 O -0.58 -15.12 13.93 5.54 0.08 -15.04 16 12 C 0.05 0.84 5.45 -4.97 -0.03 0.82 16 13 N -0.51 -8.46 4.39 -236.11 -1.04 -9.50 16 14 C 0.05 0.78 5.11 -3.84 -0.02 0.76 16 15 C -0.11 -1.42 6.09 -26.65 -0.16 -1.59 16 16 C -0.11 -1.27 5.27 -26.61 -0.14 -1.41 16 17 C 0.01 0.12 2.78 -91.69 -0.25 -0.13 16 18 H 0.09 1.04 7.53 -51.93 -0.39 0.65 16 19 C 0.16 2.06 6.65 -154.23 -1.03 1.03 16 20 N -0.24 -3.73 12.19 32.94 0.40 -3.33 16 21 N -0.29 -4.36 12.31 31.14 0.38 -3.98 16 22 C 0.19 2.21 7.92 -156.06 -1.24 0.97 16 23 C -0.08 -0.62 10.11 -39.40 -0.40 -1.01 16 24 C -0.09 -0.46 10.07 -39.51 -0.40 -0.86 16 25 C -0.14 -0.72 9.98 -39.88 -0.40 -1.11 16 26 C 0.07 0.52 10.78 -16.69 -0.18 0.34 16 27 N -0.39 -4.30 2.95 -59.73 -0.18 -4.48 16 28 C 0.07 0.93 4.72 -3.83 -0.02 0.92 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 31 H 0.09 1.44 7.98 -51.93 -0.41 1.02 16 32 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 33 H 0.11 2.06 5.81 -51.93 -0.30 1.76 16 34 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 0.29 8.06 -52.48 -0.42 -0.14 16 41 H 0.16 0.30 8.06 -52.49 -0.42 -0.12 16 42 H 0.17 0.87 7.63 -52.49 -0.40 0.47 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.97 8.01 -51.93 -0.42 0.56 16 LS Contribution 364.01 15.07 5.49 5.49 Total: -1.00 -34.10 364.01 -9.79 -43.88 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -5.98 Total: 8.03 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -4.58 Total: 1.09 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: 0.24 Total: -59.40 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.08 Total: -15.04 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.10 -9.79 -43.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155792026.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.380 kcal (2) G-P(sol) polarization free energy of solvation -34.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds