Wall clock time and date at job start Tue Mar 31 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 120.00354 * 2 1 4 4 H 1.48503 * 109.46828 * 269.99725 * 3 2 1 5 5 H 1.48496 * 109.46876 * 29.99440 * 3 2 1 6 6 H 1.48497 * 109.47202 * 149.99546 * 3 2 1 7 7 C 1.38817 * 119.99508 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 163.35748 * 7 2 1 9 9 N 1.36928 * 120.00359 * 343.35867 * 7 2 1 10 10 C 1.46931 * 120.63015 * 331.40136 * 9 7 2 11 11 C 1.53195 * 108.77396 * 233.58956 * 10 9 7 12 12 C 1.53036 * 109.31428 * 305.36295 * 11 10 9 13 13 N 1.46495 * 109.46226 * 181.38961 * 12 11 10 14 14 C 1.47315 * 126.69435 * 119.97400 * 13 12 11 15 15 C 1.51583 * 103.59419 * 180.02562 * 14 13 12 16 16 O 1.21239 * 127.15599 * 179.97438 * 15 14 13 17 17 N 1.34768 * 105.68676 * 359.97438 * 15 14 13 18 18 C 1.40201 * 124.17694 * 180.02562 * 17 15 14 19 19 C 1.38824 * 120.06879 * 353.49023 * 18 17 15 20 20 C 1.38117 * 119.93319 * 179.79151 * 19 18 17 21 21 C 1.38278 * 120.06864 * 0.48705 * 20 19 18 22 22 C 1.38271 * 120.12910 * 359.74270 * 21 20 19 23 23 C 1.38127 * 120.06857 * 0.02562 * 22 21 20 24 24 C 1.33796 * 111.64208 * 359.97438 * 17 15 14 25 25 O 1.21536 * 123.76911 * 180.26482 * 24 17 15 26 26 C 1.53044 * 109.52883 * 61.37158 * 12 11 10 27 27 C 1.46923 * 120.63603 * 151.38273 * 9 7 2 28 28 H 0.96993 * 119.99720 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.58868 * 113.80219 * 10 9 7 30 30 H 1.09001 * 109.70234 * 353.44063 * 10 9 7 31 31 H 1.09002 * 109.49657 * 185.41027 * 11 10 9 32 32 H 1.09001 * 109.49926 * 65.31871 * 11 10 9 33 33 H 1.09002 * 109.45876 * 301.36121 * 12 11 10 34 34 H 1.09003 * 110.59451 * 298.54905 * 14 13 12 35 35 H 1.08998 * 110.59898 * 61.49198 * 14 13 12 36 36 H 1.08005 * 120.02988 * 0.02562 * 19 18 17 37 37 H 1.08004 * 119.96836 * 180.25230 * 20 19 18 38 38 H 1.07999 * 119.93180 * 179.72453 * 21 20 19 39 39 H 1.08007 * 119.96593 * 180.02562 * 22 21 20 40 40 H 1.07992 * 120.03404 * 180.02562 * 23 22 21 41 41 H 1.09007 * 109.49388 * 58.58242 * 26 12 11 42 42 H 1.09000 * 109.49893 * 178.67585 * 26 12 11 43 43 H 1.09007 * 109.58733 * 246.20176 * 27 9 7 44 44 H 1.09008 * 109.58346 * 6.47885 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4477 2.6526 0.6999 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0563 -1.2220 -0.2674 9 7 1.3686 -2.3631 0.3406 10 6 0.2267 -2.3441 1.2651 11 6 0.4988 -3.3306 2.4051 12 6 0.8092 -4.7094 1.8180 13 7 1.0374 -5.6632 2.9063 14 6 0.2716 -6.8928 3.1741 15 6 0.9429 -7.4697 4.4047 16 8 0.6467 -8.4890 4.9904 17 7 1.9375 -6.6138 4.7121 18 6 2.8122 -6.7793 5.7952 19 6 2.6019 -7.8029 6.7091 20 6 3.4678 -7.9661 7.7727 21 6 4.5377 -7.1049 7.9334 22 6 4.7470 -6.0815 7.0275 23 6 3.8872 -5.9163 5.9591 24 6 1.9877 -5.5874 3.8554 25 8 2.8031 -4.6888 3.9248 26 6 2.0629 -4.6230 0.9445 27 6 1.8085 -3.6513 -0.2121 28 1 -0.4849 0.8400 -0.0004 29 1 -0.6782 -2.6397 0.7343 30 1 0.1003 -1.3410 1.6724 31 1 -0.3805 -3.3976 3.0458 32 1 1.3505 -2.9843 2.9905 33 1 -0.0329 -5.0442 1.2124 34 1 -0.7722 -6.6569 3.3817 35 1 0.3500 -7.5839 2.3349 36 1 1.7640 -8.4734 6.5864 37 1 3.3070 -8.7647 8.4817 38 1 5.2108 -7.2318 8.7683 39 1 5.5838 -5.4106 7.1553 40 1 4.0515 -5.1170 5.2517 41 1 2.8998 -4.2643 1.5438 42 1 2.2971 -5.6100 0.5456 43 1 1.0325 -4.0535 -0.8636 44 1 2.7269 -3.5099 -0.7821 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225822000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:25 Heat of formation + Delta-G solvation = 11.426560 kcal Electronic energy + Delta-G solvation = -28495.147362 eV Core-core repulsion = 24606.956651 eV Total energy + Delta-G solvation = -3888.190711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.83569 -40.37158 -39.81989 -38.99566 -37.34621 -36.34550 -34.43956 -32.40553 -31.92694 -31.56202 -30.51999 -28.73784 -26.98571 -25.02980 -24.68693 -23.86291 -23.46186 -22.33554 -21.77826 -20.43899 -19.19867 -18.78176 -18.35821 -17.58826 -17.47806 -17.03270 -16.76687 -16.41019 -15.68216 -15.54749 -15.48433 -15.36518 -15.30230 -15.04429 -14.86137 -14.77054 -14.37141 -14.17790 -14.04010 -13.72193 -13.23884 -13.16599 -13.01327 -12.75148 -12.58439 -12.43468 -12.17417 -12.11007 -12.01599 -11.84533 -11.60112 -11.51696 -11.20926 -10.90956 -10.55495 -10.01723 -9.97405 -9.38972 -8.67371 -7.88914 -5.32347 0.07130 0.34879 0.53629 0.86119 1.44592 1.47259 1.56441 1.84110 1.88262 2.50848 2.81113 2.89580 3.27595 3.52315 3.68773 3.88964 3.95620 3.97236 4.04689 4.15305 4.25459 4.28029 4.29148 4.34135 4.43497 4.47916 4.61861 4.66601 4.72273 4.87584 5.00006 5.03382 5.05713 5.10420 5.14214 5.34640 5.39693 5.43060 5.46913 5.53236 5.56265 5.65209 5.74905 5.95405 6.05668 6.24674 6.40187 6.93325 7.15811 7.86828 8.36132 9.17692 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.017976 B = 0.003197 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.247646 B = 8755.938390 C = 9789.426459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.059 0.941 9 N -0.612 5.612 10 C 0.184 3.816 11 C -0.141 4.141 12 C 0.199 3.801 13 N -0.610 5.610 14 C 0.069 3.931 15 C 0.521 3.479 16 O -0.479 6.479 17 N -0.526 5.526 18 C 0.111 3.889 19 C -0.151 4.151 20 C -0.100 4.100 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.160 4.160 24 C 0.688 3.312 25 O -0.558 6.558 26 C -0.135 4.135 27 C 0.148 3.852 28 H 0.251 0.749 29 H 0.018 0.982 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.039 0.961 33 H 0.129 0.871 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.147 0.853 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.037 0.963 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.820 -19.533 11.909 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.788 3.212 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.394 4.394 8 H 0.077 0.923 9 N -0.335 5.335 10 C 0.058 3.942 11 C -0.181 4.181 12 C 0.099 3.901 13 N -0.347 5.347 14 C -0.054 4.054 15 C 0.311 3.689 16 O -0.350 6.350 17 N -0.263 5.263 18 C 0.020 3.980 19 C -0.170 4.170 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.125 4.125 23 C -0.179 4.179 24 C 0.391 3.609 25 O -0.433 6.433 26 C -0.175 4.175 27 C 0.022 3.978 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.058 0.942 33 H 0.147 0.853 34 H 0.177 0.823 35 H 0.181 0.819 36 H 0.165 0.835 37 H 0.177 0.823 38 H 0.176 0.824 39 H 0.163 0.837 40 H 0.155 0.845 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.950 -19.386 12.119 22.945 hybrid contribution 0.470 1.471 -0.097 1.547 sum 2.420 -17.915 12.022 21.710 Atomic orbital electron populations 1.70128 1.06299 1.25827 1.55256 1.25694 0.96084 1.01123 1.01229 0.85396 0.78020 0.80089 0.77683 1.20767 1.21699 1.20333 1.19412 0.92548 0.86316 1.41082 0.92346 1.44305 1.36209 1.02563 1.50431 1.20516 0.88333 0.97051 0.88338 1.22423 1.00754 0.95675 0.99209 1.20958 0.99078 0.85978 0.84085 1.48143 1.32032 1.25770 1.28751 1.22905 0.99262 0.86780 0.96489 1.21506 0.78892 0.82257 0.86229 1.90708 1.65391 1.22597 1.56331 1.43983 1.31226 1.24383 1.26740 1.18097 0.92093 0.99109 0.88655 1.21563 1.02582 0.98007 0.94880 1.21410 0.93769 0.99821 0.96790 1.21631 0.98369 0.94462 0.99807 1.21384 0.98942 0.98684 0.93461 1.21793 0.94684 1.00426 1.01013 1.16107 0.82984 0.81455 0.80359 1.90862 1.40816 1.36771 1.74870 1.22303 0.97424 1.00169 0.97570 1.20993 0.98067 0.85314 0.93420 0.94026 0.96410 0.93137 0.91064 0.94165 0.85307 0.82320 0.81866 0.83508 0.82317 0.82413 0.83696 0.84538 0.93747 0.89505 0.94525 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.12 11.21 21.65 0.24 -53.88 16 2 C -0.05 -2.56 4.92 84.86 0.42 -2.14 16 3 Si 0.96 45.54 29.59 68.60 2.03 47.57 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 7 C -0.26 -14.64 9.58 84.04 0.80 -13.84 16 8 H 0.06 3.24 7.88 -2.91 -0.02 3.22 16 9 N -0.61 -30.15 2.99 -699.07 -2.09 -32.24 16 10 C 0.18 8.50 5.29 86.36 0.46 8.95 16 11 C -0.14 -5.18 5.38 30.67 0.16 -5.02 16 12 C 0.20 5.65 2.81 45.02 0.13 5.78 16 13 N -0.61 -14.89 2.88 -817.59 -2.36 -17.25 16 14 C 0.07 1.02 7.65 85.76 0.66 1.67 16 15 C 0.52 11.28 8.18 87.94 0.72 12.00 16 16 O -0.48 -11.49 15.07 -2.90 -0.04 -11.54 16 17 N -0.53 -14.26 2.83 -594.74 -1.68 -15.94 16 18 C 0.11 3.10 6.56 38.08 0.25 3.35 16 19 C -0.15 -3.52 9.31 22.38 0.21 -3.31 16 20 C -0.10 -1.77 10.04 22.25 0.22 -1.54 16 21 C -0.12 -2.10 10.04 22.29 0.22 -1.88 16 22 C -0.11 -2.30 10.04 22.25 0.22 -2.07 16 23 C -0.16 -4.55 9.26 22.39 0.21 -4.34 16 24 C 0.69 21.19 7.70 179.44 1.38 22.58 16 25 O -0.56 -21.69 12.12 -3.83 -0.05 -21.74 16 26 C -0.13 -4.35 5.38 30.67 0.16 -4.18 16 27 C 0.15 5.76 6.52 86.36 0.56 6.32 16 28 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 29 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.05 2.73 6.09 -2.39 -0.01 2.72 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.04 1.76 7.02 -2.39 -0.02 1.74 16 33 H 0.13 2.86 8.12 -2.39 -0.02 2.84 16 34 H 0.16 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.16 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.15 3.45 5.38 -2.91 -0.02 3.44 16 37 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 39 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 40 H 0.14 4.64 5.19 -2.91 -0.02 4.62 16 41 H 0.04 1.75 7.00 -2.38 -0.02 1.73 16 42 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.05 2.08 7.93 -2.38 -0.02 2.06 16 Total: -1.00 -73.34 352.62 3.87 -69.48 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 1.02 Total: 13.22 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 6.79 Total: 22.32 kcal Atomic # 7 Polarization: -113.42 SS G_CDS: -5.89 Total: -119.31 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.09 Total: -33.27 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -73.34 3.87 -69.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225822000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.903 kcal (2) G-P(sol) polarization free energy of solvation -73.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds