Wall clock time and date at job start Tue Mar 31 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47162 * 152.71300 * 3 2 1 5 5 C 1.35897 * 117.00058 * 180.02562 * 4 3 2 6 6 C 1.38731 * 120.05584 * 179.97438 * 5 4 3 7 7 C 1.38146 * 119.94112 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.05912 * 0.03086 * 7 6 5 9 9 C 1.50698 * 119.94853 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47106 * 89.99467 * 9 8 7 11 11 O 1.21275 * 120.00197 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99596 * 180.02562 * 10 9 8 13 13 C 1.46969 * 120.59184 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63823 * 235.24762 * 13 12 10 15 15 N 1.46971 * 108.63406 * 310.57818 * 14 13 12 16 16 C 1.36933 * 120.58954 * 235.20080 * 15 14 13 17 17 H 1.08004 * 119.99676 * 151.84704 * 16 15 14 18 18 C 1.38804 * 120.00274 * 331.57456 * 16 15 14 19 19 N 1.31613 * 120.00257 * 342.82344 * 18 16 15 20 20 Si 1.86809 * 120.00042 * 162.81945 * 18 16 15 21 21 H 1.48504 * 109.46931 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46750 * 119.99895 * 20 18 16 23 23 H 1.48498 * 109.47076 * 239.99975 * 20 18 16 24 24 C 1.46964 * 118.81046 * 55.47559 * 15 14 13 25 25 C 1.46965 * 120.59893 * 0.02562 * 12 10 9 26 26 C 1.38271 * 120.11056 * 0.24252 * 8 7 6 27 27 C 1.38146 * 120.05407 * 359.45902 * 26 8 7 28 28 H 1.09006 * 109.46923 * 32.70939 * 3 2 1 29 29 H 1.08998 * 109.47076 * 272.71832 * 3 2 1 30 30 H 1.07993 * 120.03238 * 0.02562 * 6 5 4 31 31 H 1.08000 * 119.97470 * 179.97438 * 7 6 5 32 32 H 1.09008 * 109.47104 * 329.99784 * 9 8 7 33 33 H 1.08996 * 109.47686 * 209.99983 * 9 8 7 34 34 H 1.09001 * 109.60759 * 115.50025 * 13 12 10 35 35 H 1.08998 * 109.74755 * 355.07824 * 13 12 10 36 36 H 1.08993 * 109.61301 * 190.83327 * 14 13 12 37 37 H 1.09004 * 109.75220 * 70.40370 * 14 13 12 38 38 H 0.97004 * 120.00510 * 180.02562 * 19 18 16 39 39 H 1.08995 * 109.60931 * 64.27031 * 24 15 14 40 40 H 1.09004 * 109.60392 * 184.78099 * 24 15 14 41 41 H 1.09002 * 109.60509 * 244.49992 * 25 12 10 42 42 H 1.09000 * 109.60856 * 4.83277 * 25 12 10 43 43 H 1.08001 * 119.97308 * 179.70863 * 26 8 7 44 44 H 1.07998 * 120.02523 * 180.25322 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0838 1.1982 -0.6176 5 6 4.4310 1.3568 -0.6998 6 6 4.9620 2.4956 -1.2877 7 6 6.3318 2.6542 -1.3704 8 6 7.1734 1.6788 -0.8684 9 6 8.6674 1.8541 -0.9605 10 6 9.1668 2.5638 0.2717 11 8 8.3865 2.8943 1.1393 12 7 10.4806 2.8312 0.4093 13 6 10.9817 3.5232 1.6051 14 6 11.7627 4.7662 1.1610 15 7 12.7197 4.3715 0.1177 16 6 14.0544 4.6441 0.2572 17 1 14.7877 4.0085 -0.2168 18 6 14.4646 5.7404 1.0032 19 7 13.6091 6.6984 1.2904 20 14 16.2311 5.8560 1.5998 21 1 16.9859 4.6601 1.1466 22 1 16.8624 7.0795 1.0431 23 1 16.2493 5.9207 3.0833 24 6 12.2178 3.6846 -1.0807 25 6 11.4375 2.4372 -0.6342 26 6 6.6467 0.5403 -0.2870 27 6 5.2776 0.3798 -0.1963 28 1 2.9717 -0.8639 -0.5554 29 1 2.9714 -0.0479 1.0265 30 1 4.3051 3.2576 -1.6805 31 1 6.7458 3.5403 -1.8284 32 1 8.9102 2.4450 -1.8437 33 1 9.1440 0.8767 -1.0351 34 1 11.6400 2.8578 2.1638 35 1 10.1444 3.8231 2.2352 36 1 12.3008 5.1836 2.0119 37 1 11.0739 5.5111 0.7626 38 1 13.8958 7.4647 1.8114 39 1 11.5587 4.3520 -1.6358 40 1 13.0565 3.3875 -1.7103 41 1 12.1283 1.6943 -0.2352 42 1 10.8996 2.0172 -1.4841 43 1 7.3062 -0.2224 0.1002 44 1 4.8667 -0.5078 0.2616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266659647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:54 Heat of formation + Delta-G solvation = 20.515187 kcal Electronic energy + Delta-G solvation = -26806.880452 eV Core-core repulsion = 22919.083853 eV Total energy + Delta-G solvation = -3887.796599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.63997 -39.68016 -38.08816 -36.88965 -36.59724 -33.92496 -32.51687 -31.30113 -31.20189 -30.37802 -29.35246 -27.45050 -26.33138 -23.68447 -23.10815 -22.88500 -21.80211 -20.40878 -18.76515 -18.64453 -18.53988 -17.19768 -16.73714 -16.18247 -15.95294 -15.90240 -15.12974 -14.82520 -14.81558 -14.50828 -14.01581 -13.78936 -13.71410 -13.67838 -13.53417 -13.38342 -13.33056 -13.15316 -12.74483 -12.54323 -12.43152 -11.94729 -11.78784 -11.58789 -11.32711 -11.23255 -11.04081 -10.86215 -10.75836 -10.57833 -10.27548 -10.00050 -9.86676 -9.41595 -9.15079 -8.62679 -8.31831 -8.25480 -6.74699 -5.88037 -3.33684 1.17481 1.21739 1.66614 2.16022 2.92747 2.97356 3.31662 3.33856 3.40066 3.41678 3.58672 3.70496 4.36142 4.41326 4.51441 4.59797 4.62772 4.69487 4.91544 5.05465 5.17812 5.23954 5.29524 5.34430 5.45599 5.53698 5.69381 5.73190 5.84727 5.85762 6.00671 6.09413 6.14888 6.31242 6.35630 6.46431 6.48690 6.51077 6.65965 6.84046 6.87225 7.02659 7.23304 7.52224 7.69673 7.89881 8.32996 8.56345 9.08770 9.71581 10.28085 11.19288 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.039122 B = 0.001971 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.537884 B =14202.458615 C =14362.676633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.211 3.789 3 C 0.159 3.841 4 O -0.311 6.311 5 C 0.120 3.880 6 C -0.141 4.141 7 C -0.064 4.064 8 C -0.088 4.088 9 C -0.100 4.100 10 C 0.509 3.491 11 O -0.548 6.548 12 N -0.598 5.598 13 C 0.088 3.912 14 C 0.158 3.842 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.068 0.932 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.904 3.096 21 H -0.277 1.277 22 H -0.290 1.290 23 H -0.288 1.288 24 C 0.130 3.870 25 C 0.088 3.912 26 C -0.065 4.065 27 C -0.204 4.204 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.023 0.977 38 H 0.255 0.745 39 H 0.023 0.977 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.125 0.875 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.078 -15.093 -5.620 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.108 4.108 3 C 0.081 3.919 4 O -0.224 6.224 5 C 0.076 3.924 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.088 4.088 9 C -0.140 4.140 10 C 0.296 3.704 11 O -0.426 6.426 12 N -0.331 5.331 13 C -0.036 4.036 14 C 0.032 3.968 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.086 0.914 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.733 3.267 21 H -0.202 1.202 22 H -0.217 1.217 23 H -0.215 1.215 24 C 0.003 3.997 25 C -0.037 4.037 26 C -0.084 4.084 27 C -0.223 4.223 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -16.242 -14.616 -5.134 22.445 hybrid contribution 1.546 0.063 0.419 1.603 sum -14.696 -14.553 -4.715 21.213 Atomic orbital electron populations 1.81261 1.12470 1.06110 1.07892 1.28387 0.94266 0.94433 0.93705 1.19737 0.81902 0.89116 1.01162 1.86049 1.20616 1.39428 1.76292 1.18814 0.80495 0.95408 0.97696 1.20354 0.95125 0.96893 1.03628 1.20853 0.91958 0.97945 0.97436 1.19310 0.94206 0.95034 1.00282 1.20670 0.92681 1.02455 0.98159 1.20424 0.82081 0.79846 0.88025 1.90673 1.54819 1.53823 1.43312 1.48090 1.06111 1.57346 1.21527 1.22475 0.98318 0.96405 0.86361 1.21185 0.90751 0.90739 0.94149 1.44017 1.04253 1.67678 1.15440 1.19224 0.82071 1.06565 1.30887 0.91413 1.25092 0.97717 0.94712 1.01977 1.70025 1.34398 1.08543 1.41431 0.86214 0.84430 0.77543 0.78497 1.20183 1.21676 1.21459 1.21358 0.96303 0.91685 0.90387 1.22467 0.92029 0.99228 0.89969 1.20767 0.94237 0.97086 0.96263 1.21126 0.94318 1.00172 1.06694 0.87199 0.87136 0.85072 0.85172 0.88009 0.88269 0.92296 0.90183 0.88318 0.95885 0.93467 0.95865 0.91482 0.91570 0.90879 0.85717 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.23 18.54 42.15 0.78 -3.45 16 2 C 0.21 1.60 15.82 -20.76 -0.33 1.27 16 3 C 0.16 0.74 5.21 34.37 0.18 0.92 16 4 O -0.31 -2.61 10.09 -19.42 -0.20 -2.81 16 5 C 0.12 1.12 6.69 -39.22 -0.26 0.86 16 6 C -0.14 -1.45 9.99 -39.43 -0.39 -1.84 16 7 C -0.06 -0.69 9.69 -39.61 -0.38 -1.08 16 8 C -0.09 -0.97 4.37 -104.60 -0.46 -1.43 16 9 C -0.10 -1.10 4.17 -29.03 -0.12 -1.22 16 10 C 0.51 8.08 7.69 -10.98 -0.08 8.00 16 11 O -0.55 -10.63 15.44 5.56 0.09 -10.54 16 12 N -0.60 -10.10 2.95 -172.24 -0.51 -10.60 16 13 C 0.09 1.71 6.59 -3.60 -0.02 1.68 16 14 C 0.16 3.66 5.51 -3.60 -0.02 3.64 16 15 N -0.59 -13.90 2.96 -171.80 -0.51 -14.41 16 16 C -0.26 -6.68 9.57 -15.06 -0.14 -6.83 16 17 H 0.07 1.71 7.89 -52.48 -0.41 1.29 16 18 C 0.00 0.11 4.91 -17.44 -0.09 0.02 16 19 N -0.90 -25.32 11.20 55.49 0.62 -24.69 16 20 Si 0.90 20.82 29.59 -169.99 -5.03 15.79 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 2.42 6.70 -3.39 -0.02 2.39 16 25 C 0.09 1.30 6.52 -3.39 -0.02 1.27 16 26 C -0.07 -0.64 9.69 -39.60 -0.38 -1.02 16 27 C -0.20 -1.68 9.04 -39.43 -0.36 -2.04 16 28 H 0.11 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.11 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 32 H 0.10 0.97 7.66 -51.92 -0.40 0.57 16 33 H 0.10 0.85 7.85 -51.93 -0.41 0.45 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.08 1.58 7.00 -51.93 -0.36 1.22 16 36 H 0.10 2.55 6.00 -51.93 -0.31 2.23 16 37 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.07 0.79 5.91 -51.93 -0.31 0.48 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 44 H 0.13 0.61 6.30 -52.49 -0.33 0.28 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -33.84 371.18 -7.91 -41.75 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.83 Total: -1.26 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: -2.91 Total: 4.62 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.39 Total: -53.15 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.11 Total: -13.35 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.84 -7.91 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266659647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.263 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds