Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38843 * 125.50185 * 2 1 4 4 C 1.38701 * 107.67623 * 179.97438 * 3 2 1 5 5 N 1.34158 * 132.25470 * 179.97438 * 4 3 2 6 6 C 1.30896 * 121.17223 * 180.02562 * 5 4 3 7 7 C 1.41542 * 120.07285 * 359.96468 * 6 5 4 8 8 C 1.47604 * 120.50500 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99589 * 229.52699 * 8 7 6 10 10 N 1.34777 * 119.99813 * 49.52728 * 8 7 6 11 11 C 1.46962 * 120.59397 * 5.09891 * 10 8 7 12 12 C 1.53813 * 108.39583 * 124.76038 * 11 10 8 13 13 N 1.46967 * 108.58063 * 49.63628 * 12 11 10 14 14 C 1.36939 * 120.59403 * 124.62229 * 13 12 11 15 15 H 1.08004 * 119.99832 * 208.91473 * 14 13 12 16 16 C 1.38811 * 120.00032 * 28.92047 * 14 13 12 17 17 N 1.31621 * 119.99855 * 20.16092 * 16 14 13 18 18 Si 1.86801 * 119.99939 * 200.16641 * 16 14 13 19 19 H 1.48491 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47055 * 120.00180 * 18 16 14 21 21 H 1.48500 * 109.46680 * 239.99541 * 18 16 14 22 22 C 1.46967 * 118.80875 * 304.64753 * 13 12 11 23 23 C 1.46960 * 120.58964 * 185.37909 * 10 8 7 24 24 C 1.38076 * 118.99157 * 0.02562 * 7 6 5 25 25 C 1.50698 * 120.54947 * 180.02562 * 24 7 6 26 26 N 1.36064 * 118.88860 * 0.02562 * 24 7 6 27 27 N 1.31289 * 125.50797 * 179.69012 * 2 1 3 28 28 H 1.09006 * 109.47032 * 90.00634 * 1 2 3 29 29 H 1.08999 * 109.47212 * 209.99501 * 1 2 3 30 30 H 1.08996 * 109.47773 * 330.00362 * 1 2 3 31 31 H 1.07998 * 126.16464 * 359.94024 * 3 2 1 32 32 H 1.08001 * 119.96336 * 179.97438 * 6 5 4 33 33 H 1.08998 * 109.60631 * 244.54104 * 11 10 8 34 34 H 1.09000 * 109.61289 * 5.05571 * 11 10 8 35 35 H 1.08998 * 109.74204 * 289.84611 * 12 11 10 36 36 H 1.08998 * 109.53230 * 169.30019 * 12 11 10 37 37 H 0.96999 * 119.99761 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.61177 * 295.48091 * 22 13 12 39 39 H 1.09004 * 109.74449 * 175.05357 * 22 13 12 40 40 H 1.09007 * 109.61308 * 354.94752 * 23 10 8 41 41 H 1.08998 * 109.60822 * 115.45847 * 23 10 8 42 42 H 1.08992 * 109.47587 * 272.37745 * 25 24 7 43 43 H 1.08993 * 109.47490 * 32.39013 * 25 24 7 44 44 H 1.09008 * 109.46791 * 152.38242 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3133 1.1303 0.0000 4 6 3.6337 0.7057 0.0006 5 7 4.7965 1.3749 0.0004 6 6 5.9423 0.7421 0.0006 7 6 5.9711 -0.6730 0.0018 8 6 7.2578 -1.3963 0.0014 9 8 7.4522 -2.2906 -0.7990 10 7 8.2171 -1.0652 0.8884 11 6 7.9571 -0.0645 1.9327 12 6 8.2652 -0.6983 3.2999 13 7 9.5920 -1.3272 3.2361 14 6 10.5670 -0.9902 4.1367 15 1 11.6077 -1.0553 3.8554 16 6 10.2178 -0.5650 5.4111 17 7 9.0281 -0.8498 5.8969 18 14 11.4361 0.4116 6.4364 19 1 12.6930 0.5972 5.6679 20 1 10.8554 1.7384 6.7645 21 1 11.7284 -0.3250 7.6923 22 6 9.8537 -2.3239 2.1882 23 6 9.5438 -1.6942 0.8246 24 6 4.7772 -1.3666 0.0022 25 6 4.7669 -2.8736 0.0040 26 7 3.6104 -0.6668 0.0009 27 7 2.2695 -1.0687 0.0058 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5137 31 1 1.9735 2.1555 -0.0009 32 1 6.8668 1.3004 0.0000 33 1 8.5982 0.8030 1.7758 34 1 6.9109 0.2393 1.8960 35 1 7.5138 -1.4524 3.5338 36 1 8.2633 0.0745 4.0686 37 1 8.7842 -0.5530 6.7876 38 1 9.2153 -3.1937 2.3430 39 1 10.9001 -2.6274 2.2218 40 1 9.5458 -2.4670 0.0559 41 1 10.2952 -0.9401 0.5906 42 1 4.8074 -3.2385 -1.0222 43 1 5.6318 -3.2422 0.5552 44 1 3.8536 -3.2301 0.4805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266740419.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = 115.399508 kcal Electronic energy + Delta-G solvation = -28418.688149 eV Core-core repulsion = 24567.298795 eV Total energy + Delta-G solvation = -3851.389355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.54406 -40.07969 -38.03236 -36.96455 -35.06940 -34.02301 -32.68387 -31.43464 -30.36358 -29.82008 -28.76137 -28.49080 -26.91253 -24.30279 -23.68726 -23.19965 -22.50764 -21.13297 -20.33662 -18.98752 -18.57614 -17.54099 -16.95019 -16.45288 -16.04425 -15.82116 -15.16235 -14.92681 -14.76984 -14.14822 -13.90360 -13.81269 -13.66771 -13.50979 -13.42256 -13.34422 -13.25803 -13.17523 -12.80389 -12.56390 -12.42022 -12.27359 -11.73594 -11.47840 -11.33407 -10.93307 -10.86980 -10.76585 -10.57897 -10.39367 -10.29310 -10.09639 -9.91758 -9.67932 -9.40810 -8.70103 -8.44004 -8.03282 -6.82116 -5.94954 -3.38350 0.30505 0.53810 1.71573 2.27971 2.74438 3.11819 3.28843 3.33550 3.38335 3.40010 3.64746 3.82385 4.03658 4.37366 4.46293 4.68617 4.79751 5.07746 5.09869 5.13622 5.23313 5.26773 5.28245 5.31606 5.36194 5.45798 5.62660 5.69155 5.69844 5.77219 5.79953 5.92415 5.94700 6.03434 6.17221 6.21204 6.27515 6.37961 6.66356 6.77039 7.03230 7.24255 7.28406 7.43609 7.61071 7.68658 8.22701 8.26451 9.02164 9.65452 10.22373 11.13147 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003305 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.507633 B = 8470.287253 C = 9322.450336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.117 3.883 3 C -0.265 4.265 4 C 0.267 3.733 5 N -0.472 5.472 6 C 0.218 3.782 7 C -0.241 4.241 8 C 0.573 3.427 9 O -0.543 6.543 10 N -0.584 5.584 11 C 0.075 3.925 12 C 0.161 3.839 13 N -0.589 5.589 14 C -0.260 4.260 15 H 0.069 0.931 16 C 0.006 3.994 17 N -0.898 5.898 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.290 1.290 22 C 0.131 3.869 23 C 0.096 3.904 24 C 0.255 3.745 25 C -0.118 4.118 26 N -0.313 5.313 27 N -0.309 5.309 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.097 0.903 37 H 0.255 0.745 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.099 0.901 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.869 2.322 -12.056 17.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.295 4.295 4 C 0.042 3.958 5 N -0.183 5.183 6 C 0.033 3.967 7 C -0.251 4.251 8 C 0.359 3.641 9 O -0.421 6.421 10 N -0.315 5.315 11 C -0.049 4.049 12 C 0.034 3.966 13 N -0.312 5.312 14 C -0.389 4.389 15 H 0.087 0.913 16 C -0.193 4.193 17 N -0.541 5.541 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.217 1.217 22 C 0.004 3.996 23 C -0.027 4.027 24 C 0.136 3.864 25 C -0.175 4.175 26 N -0.083 5.083 27 N -0.134 5.134 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.181 0.819 32 H 0.201 0.799 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.156 1.528 -12.267 17.337 hybrid contribution 0.686 0.732 0.770 1.265 sum -11.469 2.259 -11.497 16.396 Atomic orbital electron populations 1.20294 0.85388 1.04036 1.03575 1.22364 0.97408 0.90103 0.94383 1.20866 0.87435 1.00314 1.20913 1.20827 0.94994 0.80141 0.99881 1.68160 0.95974 1.36370 1.17798 1.23539 0.96493 0.89995 0.86684 1.20472 0.93563 0.95463 1.15556 1.17402 0.82502 0.82827 0.81373 1.90770 1.80394 1.30897 1.40084 1.47984 1.12837 1.41274 1.29369 1.22969 0.99885 0.91336 0.90712 1.21182 0.86715 0.97160 0.91519 1.43996 1.11175 1.43219 1.32818 1.19207 0.88002 1.40521 0.91202 0.91323 1.25081 0.97030 1.01101 0.96104 1.70064 1.21085 1.46277 1.16677 0.86246 0.80750 0.79892 0.80013 1.20100 1.21393 1.21667 1.21305 0.99554 0.91488 0.87253 1.22326 0.81892 0.97957 1.00571 1.20925 0.81190 0.96081 0.88186 1.21064 1.05260 0.85771 1.05355 1.46955 1.05914 1.07217 1.48183 1.77801 0.82379 1.21436 1.31801 0.89787 0.90306 0.89655 0.81934 0.79892 0.90956 0.91357 0.95752 0.88515 0.93469 0.95770 0.91227 0.89586 0.91339 0.87888 0.88258 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.43 36.00 0.38 -0.16 16 2 C 0.12 1.40 7.16 -82.60 -0.59 0.80 16 3 C -0.26 -3.37 10.83 -39.19 -0.42 -3.80 16 4 C 0.27 4.00 7.91 -155.32 -1.23 2.78 16 5 N -0.47 -6.90 10.45 -11.91 -0.12 -7.03 16 6 C 0.22 2.92 8.81 -16.69 -0.15 2.78 16 7 C -0.24 -3.52 4.80 -104.88 -0.50 -4.03 16 8 C 0.57 9.19 6.32 -12.44 -0.08 9.11 16 9 O -0.54 -9.68 15.22 5.29 0.08 -9.60 16 10 N -0.58 -9.55 2.94 -173.42 -0.51 -10.06 16 11 C 0.08 1.25 5.57 -3.37 -0.02 1.23 16 12 C 0.16 3.49 5.54 -3.36 -0.02 3.47 16 13 N -0.59 -13.59 2.96 -171.76 -0.51 -14.10 16 14 C -0.26 -6.63 9.55 -15.06 -0.14 -6.78 16 15 H 0.07 1.72 7.91 -52.48 -0.42 1.31 16 16 C 0.01 0.17 4.82 -17.43 -0.08 0.08 16 17 N -0.90 -24.74 11.44 55.49 0.63 -24.10 16 18 Si 0.90 20.54 29.60 -169.99 -5.03 15.51 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.13 2.54 6.67 -3.60 -0.02 2.52 16 23 C 0.10 1.58 6.60 -3.60 -0.02 1.55 16 24 C 0.25 3.74 6.92 -80.78 -0.56 3.18 16 25 C -0.12 -1.51 9.07 36.00 0.33 -1.18 16 26 N -0.31 -4.74 3.88 -7.99 -0.03 -4.77 16 27 N -0.31 -4.44 12.44 33.54 0.42 -4.02 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.18 1.99 7.44 -52.49 -0.39 1.60 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 1.04 5.06 -51.93 -0.26 0.78 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 2.34 6.14 -51.93 -0.32 2.02 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.07 1.29 7.94 -51.93 -0.41 0.88 16 40 H 0.09 1.36 6.99 -51.93 -0.36 0.99 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.10 1.34 6.94 -51.93 -0.36 0.98 16 44 H 0.09 1.06 8.06 -51.92 -0.42 0.64 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -31.25 359.22 -8.68 -39.93 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.88 Total: 1.27 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -3.14 Total: 11.56 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.12 Total: -64.09 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.25 -8.68 -39.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266740419.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.331 kcal (2) G-P(sol) polarization free energy of solvation -31.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds