Wall clock time and date at job start Tue Mar 31 2020 05:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 11 11 C 1.53191 * 108.78102 * 126.41583 * 10 9 7 12 12 C 1.53038 * 109.31003 * 54.63368 * 11 10 9 13 13 C 1.53076 * 109.65976 * 298.70288 * 12 11 10 14 14 H 1.09001 * 109.38719 * 301.27578 * 13 12 11 15 15 C 1.53001 * 109.62376 * 181.17508 * 13 12 11 16 16 N 1.46495 * 109.47310 * 175.11021 * 15 13 12 17 17 C 1.34780 * 120.00174 * 180.02562 * 16 15 13 18 18 O 1.21572 * 119.99884 * 359.97438 * 17 16 15 19 19 C 1.47710 * 120.00028 * 179.97438 * 17 16 15 20 20 C 1.40247 * 119.86550 * 359.97438 * 19 17 16 21 21 C 1.36272 * 120.45793 * 180.02562 * 20 19 17 22 22 C 1.39315 * 120.14186 * 359.95212 * 21 20 19 23 23 N 1.37270 * 133.71114 * 180.02562 * 22 21 20 24 24 H 0.96995 * 126.65859 * 0.02562 * 23 22 21 25 25 N 1.40233 * 106.68165 * 180.02562 * 23 22 21 26 26 N 1.28637 * 109.51104 * 0.02562 * 25 23 22 27 27 C 1.35424 * 110.13305 * 0.02562 * 26 25 23 28 28 C 1.38891 * 119.86168 * 179.72455 * 19 17 16 29 29 C 1.46922 * 120.63040 * 331.83749 * 9 7 2 30 30 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58688 * 246.20238 * 10 9 7 32 32 H 1.09005 * 109.58350 * 6.47767 * 10 9 7 33 33 H 1.08994 * 109.50062 * 174.59023 * 11 10 9 34 34 H 1.09000 * 109.49303 * 294.68969 * 11 10 9 35 35 H 1.08994 * 109.46455 * 58.66143 * 12 11 10 36 36 H 1.08998 * 109.45845 * 178.63278 * 12 11 10 37 37 H 1.09007 * 109.46506 * 295.10432 * 15 13 12 38 38 H 1.09004 * 109.47431 * 55.10207 * 15 13 12 39 39 H 0.96995 * 120.00165 * 359.97438 * 16 15 13 40 40 H 1.08004 * 119.77899 * 359.97438 * 20 19 17 41 41 H 1.07993 * 119.92686 * 179.97438 * 21 20 19 42 42 H 1.07994 * 120.21624 * 359.97110 * 28 19 17 43 43 H 1.09003 * 109.58836 * 353.36829 * 29 9 7 44 44 H 1.08998 * 109.58900 * 113.65348 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 1.8138 -3.6528 -0.1979 11 6 2.0675 -4.6174 0.9649 12 6 0.8122 -4.7007 1.8363 13 6 0.4942 -3.3197 2.4148 14 1 1.3429 -2.9692 3.0021 15 6 -0.7439 -3.4099 3.3092 16 7 -0.9769 -2.1146 3.9528 17 6 -2.0199 -1.9568 4.7917 18 8 -2.7677 -2.8892 5.0139 19 6 -2.2544 -0.6510 5.4411 20 6 -1.3896 0.4226 5.1831 21 6 -1.5944 1.6323 5.7760 22 6 -2.6683 1.8127 6.6449 23 7 -3.1280 2.8797 7.3761 24 1 -2.7415 3.7687 7.4091 25 7 -4.2650 2.4349 8.0660 26 7 -4.4836 1.1994 7.7824 27 6 -3.5455 0.7467 6.9171 28 6 -3.3335 -0.4900 6.3006 29 6 0.2263 -2.3399 1.2680 30 1 -0.4850 0.8400 -0.0004 31 1 1.0401 -4.0605 -0.8485 32 1 2.7331 -3.5130 -0.7667 33 1 2.3043 -5.6062 0.5724 34 1 2.9024 -4.2535 1.5637 35 1 -0.0281 -5.0409 1.2311 36 1 0.9817 -5.4050 2.6508 37 1 -1.6106 -3.6759 2.7040 38 1 -0.5860 -4.1718 4.0726 39 1 -0.3800 -1.3708 3.7758 40 1 -0.5551 0.2895 4.5105 41 1 -0.9229 2.4531 5.5716 42 1 -4.0014 -1.3160 6.4951 43 1 0.0995 -1.3342 1.6688 44 1 -0.6773 -2.6380 0.7364 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267102008.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:39 Heat of formation + Delta-G solvation = 87.075626 kcal Electronic energy + Delta-G solvation = -27660.599546 eV Core-core repulsion = 23807.981976 eV Total energy + Delta-G solvation = -3852.617570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.35942 -39.85676 -37.95653 -37.17732 -34.77918 -33.89770 -33.15297 -31.37700 -30.63770 -30.27287 -29.75140 -25.96988 -25.34722 -24.17869 -23.63656 -22.57110 -22.20037 -20.96188 -20.55063 -19.20656 -18.59502 -18.01916 -16.96400 -16.61937 -16.10408 -15.96112 -15.29157 -14.97591 -14.78339 -14.35196 -14.14862 -14.01247 -13.68059 -13.48753 -13.22323 -12.93757 -12.63779 -12.43857 -12.36906 -12.28709 -12.14472 -12.02011 -11.52780 -11.29557 -11.11135 -11.09317 -10.81787 -10.54640 -10.28034 -10.24360 -10.01961 -9.92266 -9.62547 -9.49596 -9.22816 -8.88033 -8.65757 -8.57116 -6.74744 -5.88159 -3.30831 0.17854 0.63477 1.90133 2.06389 2.75583 3.23040 3.25167 3.36085 3.38135 3.63619 3.85109 4.26983 4.39639 4.49243 4.61042 4.68292 4.89586 5.04224 5.16502 5.26382 5.49248 5.52421 5.54464 5.59504 5.64937 5.75376 5.84180 5.93537 5.97671 6.06049 6.22072 6.23934 6.26132 6.35279 6.45347 6.56487 6.60226 6.64962 6.76548 6.80391 6.96255 7.22934 7.52777 7.62467 7.68206 7.70805 8.32842 8.35154 9.12060 9.75148 10.33004 11.19672 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012133 B = 0.003495 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.198928 B = 8010.140128 C = 9991.546360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.898 3.102 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.129 4.129 14 H 0.070 0.930 15 C 0.131 3.869 16 N -0.712 5.712 17 C 0.561 3.439 18 O -0.543 6.543 19 C -0.144 4.144 20 C -0.032 4.032 21 C -0.128 4.128 22 C 0.111 3.889 23 N -0.498 5.498 24 H 0.449 0.551 25 N -0.005 5.005 26 N -0.203 5.203 27 C -0.030 4.030 28 C 0.033 3.967 29 C 0.179 3.821 30 H 0.253 0.747 31 H 0.017 0.983 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.404 0.596 40 H 0.147 0.853 41 H 0.141 0.859 42 H 0.154 0.846 43 H 0.086 0.914 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.097 1.311 11.757 11.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.728 3.272 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.016 3.984 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.088 0.912 15 C 0.007 3.993 16 N -0.363 5.363 17 C 0.347 3.653 18 O -0.422 6.422 19 C -0.150 4.150 20 C -0.054 4.054 21 C -0.151 4.151 22 C -0.012 4.012 23 N -0.221 5.221 24 H 0.296 0.704 25 N 0.013 4.987 26 N -0.084 5.084 27 C -0.153 4.153 28 C 0.010 3.990 29 C 0.053 3.947 30 H 0.063 0.937 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.241 0.759 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.172 0.828 43 H 0.104 0.896 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -2.869 1.109 12.850 13.213 hybrid contribution 1.737 1.784 -0.836 2.627 sum -1.132 2.894 12.015 12.410 Atomic orbital electron populations 1.70054 1.05086 1.25324 1.54127 1.25028 0.95255 0.98247 1.01086 0.86289 0.79501 0.84101 0.77320 1.20268 1.21739 1.21606 1.19245 0.92610 0.84754 1.41348 0.91665 1.44044 1.35936 1.01670 1.49847 1.20939 0.97558 0.86927 0.92949 1.21980 0.97367 0.98966 0.98872 1.21334 0.98340 0.95683 0.98487 1.22157 0.95870 0.98437 0.98473 0.91186 1.21437 0.98839 0.83735 0.95291 1.45941 1.29414 1.15364 1.45569 1.17925 0.81061 0.87102 0.79169 1.90771 1.46483 1.41689 1.63262 1.19771 0.98151 0.95026 1.02069 1.21082 0.97617 0.91008 0.95682 1.19759 0.97194 0.99305 0.98802 1.19528 0.97346 0.88483 0.95872 1.47713 1.24295 1.12923 1.37133 0.70443 1.81579 0.98860 1.05382 1.12880 1.74870 1.19822 1.03098 1.10608 1.19804 0.96095 0.96109 1.03318 1.20559 0.94544 0.94138 0.89767 1.20795 0.88867 0.97507 0.87565 0.93688 0.96475 0.92914 0.93033 0.92425 0.92429 0.93342 0.91407 0.92016 0.75902 0.83562 0.84103 0.82809 0.89551 0.96250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.10 11.20 55.49 0.62 -23.48 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 20.00 29.59 -169.99 -5.03 14.97 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.25 -6.39 9.58 -15.06 -0.14 -6.53 16 8 H 0.07 1.66 7.89 -52.49 -0.41 1.25 16 9 N -0.59 -13.76 3.00 -172.32 -0.52 -14.27 16 10 C 0.14 2.82 6.52 -3.71 -0.02 2.79 16 11 C -0.13 -2.13 6.09 -26.61 -0.16 -2.29 16 12 C -0.10 -1.54 5.17 -26.67 -0.14 -1.68 16 13 C -0.13 -2.14 2.38 -90.48 -0.22 -2.35 16 14 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 15 C 0.13 2.00 5.08 -4.04 -0.02 1.98 16 16 N -0.71 -10.39 5.28 -61.29 -0.32 -10.71 16 17 C 0.56 8.50 7.76 -12.39 -0.10 8.40 16 18 O -0.54 -9.79 16.31 5.30 0.09 -9.70 16 19 C -0.14 -1.84 5.87 -105.03 -0.62 -2.46 16 20 C -0.03 -0.34 9.46 -39.53 -0.37 -0.72 16 21 C -0.13 -1.23 10.00 -39.89 -0.40 -1.63 16 22 C 0.11 1.20 7.35 -84.10 -0.62 0.58 16 23 N -0.50 -4.58 7.54 32.39 0.24 -4.33 16 24 H 0.45 2.32 8.96 -182.50 -1.64 0.69 16 25 N -0.01 -0.06 13.82 60.35 0.83 0.77 16 26 N -0.20 -2.76 12.40 32.15 0.40 -2.36 16 27 C -0.03 -0.38 7.26 -84.76 -0.62 -1.00 16 28 C 0.03 0.42 9.64 -38.76 -0.37 0.05 16 29 C 0.18 3.79 4.38 -3.71 -0.02 3.78 16 30 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.40 5.53 5.69 -40.82 -0.23 5.30 16 40 H 0.15 1.44 6.36 -52.48 -0.33 1.10 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.15 1.94 7.62 -52.49 -0.40 1.54 16 43 H 0.09 1.97 5.26 -51.93 -0.27 1.70 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -31.10 361.27 -9.20 -40.30 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.06 Total: 4.48 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -3.90 Total: -1.10 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 1.26 Total: -54.38 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.03 Total: 14.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.10 -9.20 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267102008.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.374 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds