Wall clock time and date at job start Tue Mar 31 2020 05:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30899 * 119.96770 * 2 1 4 4 C 1.34146 * 121.16912 * 179.97438 * 3 2 1 5 5 C 1.38706 * 132.24361 * 179.97438 * 4 3 2 6 6 C 1.38845 * 107.67394 * 179.97438 * 5 4 3 7 7 N 1.31285 * 108.99338 * 0.02562 * 6 5 4 8 8 N 1.37264 * 120.90887 * 0.02562 * 4 3 2 9 9 C 1.36076 * 119.96684 * 359.97438 * 8 4 3 10 10 C 1.50709 * 120.55334 * 180.02562 * 9 8 4 11 11 C 1.38058 * 118.89423 * 0.02562 * 9 8 4 12 12 C 1.47606 * 120.50715 * 180.02562 * 11 9 8 13 13 O 1.21590 * 119.99696 * 269.97856 * 12 11 9 14 14 N 1.34771 * 120.00008 * 89.97315 * 12 11 9 15 15 C 1.46966 * 120.59413 * 359.72358 * 14 12 11 16 16 C 1.53810 * 108.39784 * 124.76038 * 15 14 12 17 17 N 1.46968 * 108.58196 * 49.63441 * 16 15 14 18 18 C 1.36936 * 120.59464 * 124.62807 * 17 16 15 19 19 H 1.08001 * 120.00021 * 207.37188 * 18 17 16 20 20 C 1.38811 * 120.00128 * 27.36049 * 18 17 16 21 21 N 1.31620 * 120.00504 * 215.24971 * 20 18 17 22 22 Si 1.86801 * 119.99768 * 35.24981 * 20 18 17 23 23 H 1.48497 * 109.47334 * 95.36854 * 22 20 18 24 24 H 1.48499 * 109.47218 * 215.37281 * 22 20 18 25 25 H 1.48504 * 109.47005 * 335.36826 * 22 20 18 26 26 C 1.46964 * 118.81064 * 304.64980 * 17 16 15 27 27 C 1.46970 * 120.59450 * 180.02562 * 14 12 11 28 28 H 1.08999 * 109.46982 * 90.00499 * 1 2 3 29 29 H 1.09005 * 109.47192 * 210.00012 * 1 2 3 30 30 H 1.08997 * 109.47210 * 330.00013 * 1 2 3 31 31 H 1.08001 * 126.16300 * 359.73834 * 5 4 3 32 32 H 1.08002 * 125.50516 * 179.97438 * 6 5 4 33 33 H 1.09000 * 109.46803 * 269.98261 * 10 9 8 34 34 H 1.08996 * 109.46901 * 29.97376 * 10 9 8 35 35 H 1.08993 * 109.47288 * 149.98132 * 10 9 8 36 36 H 1.09005 * 109.60750 * 244.54110 * 15 14 12 37 37 H 1.09000 * 109.61207 * 5.05422 * 15 14 12 38 38 H 1.09004 * 109.74159 * 289.85014 * 16 15 14 39 39 H 1.08995 * 109.53596 * 169.30392 * 16 15 14 40 40 H 0.96998 * 120.00457 * 180.02562 * 21 20 18 41 41 H 1.09000 * 109.61210 * 295.47561 * 26 17 16 42 42 H 1.08997 * 109.60669 * 174.96860 * 26 17 16 43 43 H 1.09007 * 109.60429 * 354.94812 * 27 14 12 44 44 H 1.08996 * 109.60743 * 115.28322 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1609 1.1340 0.0000 4 6 3.5020 1.1621 0.0005 5 6 4.4128 2.2083 0.0002 6 6 5.6874 1.6576 0.0016 7 7 5.5872 0.3485 0.0023 8 7 4.2317 -0.0006 0.0005 9 6 3.5944 -1.2029 0.0005 10 6 4.3824 -2.4876 0.0011 11 6 2.2141 -1.2263 0.0000 12 6 1.4864 -2.5105 0.0006 13 8 1.1868 -3.0399 -1.0522 14 7 1.1542 -3.0963 1.1680 15 6 1.5153 -2.4709 2.4480 16 6 0.2347 -2.2985 3.2823 17 7 -0.4898 -3.5771 3.2981 18 6 -0.8266 -4.1728 4.4842 19 1 -0.9401 -5.2455 4.5367 20 6 -1.0218 -3.3978 5.6192 21 7 -0.6657 -3.8581 6.7998 22 14 -1.7901 -1.7016 5.4711 23 1 -3.2501 -1.7955 5.7255 24 1 -1.1718 -0.7895 6.4666 25 1 -1.5591 -1.1712 4.1034 26 6 -0.8459 -4.2052 2.0180 27 6 0.4303 -4.3752 1.1838 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 4.1736 3.2615 -0.0046 32 1 6.6119 2.2158 0.0014 33 1 4.5725 -2.7976 -1.0264 34 1 5.3310 -2.3317 0.5149 35 1 3.8138 -3.2624 0.5152 36 1 2.2194 -3.1096 2.9815 37 1 1.9680 -1.4966 2.2644 38 1 -0.3940 -1.5274 2.8368 39 1 0.4988 -2.0151 4.3011 40 1 -0.8025 -3.3168 7.5929 41 1 -1.5514 -3.5699 1.4825 42 1 -1.2952 -5.1811 2.2019 43 1 0.1664 -4.6587 0.1649 44 1 1.0602 -5.1467 1.6266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270440665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:23 Heat of formation + Delta-G solvation = 124.919754 kcal Electronic energy + Delta-G solvation = -29195.388624 eV Core-core repulsion = 25344.412098 eV Total energy + Delta-G solvation = -3850.976526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.59850 -40.25702 -38.17482 -37.12613 -35.31692 -34.10116 -32.53039 -31.61757 -30.81665 -30.38148 -28.80369 -28.11546 -27.20223 -24.58998 -23.37762 -23.33991 -22.32225 -21.25789 -20.96511 -19.31740 -18.74137 -17.85385 -16.75583 -16.53685 -16.09490 -15.89419 -15.29220 -15.00287 -14.71036 -14.44649 -14.33101 -13.96106 -13.83543 -13.77320 -13.61374 -13.41131 -13.30055 -12.94921 -12.71491 -12.55765 -12.40452 -12.26254 -12.10069 -11.93047 -11.51878 -11.21530 -11.03842 -10.93405 -10.58533 -10.53853 -10.29509 -10.26758 -9.82955 -9.57578 -9.47913 -8.91078 -8.39744 -8.08034 -7.13282 -6.17609 -3.40748 0.24801 0.52622 1.66715 2.34733 2.48627 2.96480 3.16698 3.28777 3.41018 3.46014 3.53082 3.75662 3.88496 4.33598 4.43184 4.70632 4.72384 4.87226 4.90432 4.99105 5.07889 5.13652 5.22730 5.37413 5.38838 5.40969 5.45085 5.50867 5.62972 5.63692 5.70205 5.75347 5.89700 5.92522 5.94765 6.06525 6.14146 6.28953 6.37817 6.45059 6.61272 6.69426 7.16988 7.40882 7.45735 7.77711 8.06973 8.15918 8.77668 9.56623 9.94868 10.96659 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014822 B = 0.004172 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.584883 B = 6709.572698 C = 7297.364893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.247 3.753 3 N -0.472 5.472 4 C 0.270 3.730 5 C -0.270 4.270 6 C 0.095 3.905 7 N -0.313 5.313 8 N -0.314 5.314 9 C 0.236 3.764 10 C -0.123 4.123 11 C -0.227 4.227 12 C 0.578 3.422 13 O -0.534 6.534 14 N -0.586 5.586 15 C 0.085 3.915 16 C 0.133 3.867 17 N -0.598 5.598 18 C -0.278 4.278 19 H 0.084 0.916 20 C 0.041 3.959 21 N -0.880 5.880 22 Si 0.835 3.165 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.255 1.255 26 C 0.132 3.868 27 C 0.094 3.906 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.163 0.837 32 H 0.199 0.801 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.264 0.736 41 H 0.029 0.971 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.160 7.513 -13.651 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.083 3.917 3 N -0.185 5.185 4 C 0.044 3.956 5 C -0.301 4.301 6 C -0.084 4.084 7 N -0.137 5.137 8 N -0.085 5.085 9 C 0.118 3.882 10 C -0.180 4.180 11 C -0.237 4.237 12 C 0.362 3.638 13 O -0.411 6.411 14 N -0.317 5.317 15 C -0.040 4.040 16 C 0.006 3.994 17 N -0.321 5.321 18 C -0.405 4.405 19 H 0.101 0.899 20 C -0.161 4.161 21 N -0.519 5.519 22 Si 0.662 3.338 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.180 1.180 26 C 0.006 3.994 27 C -0.029 4.029 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.181 0.819 32 H 0.216 0.784 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.492 7.063 -13.970 18.307 hybrid contribution -0.457 1.245 0.275 1.354 sum 9.035 8.308 -13.695 18.391 Atomic orbital electron populations 1.20951 0.86438 1.05167 1.04559 1.21869 0.97730 0.85722 0.86424 1.68000 1.03859 1.27885 1.18802 1.20822 0.88102 0.86914 0.99735 1.20977 0.89582 0.98687 1.20855 1.23899 0.98961 0.90987 0.94592 1.77841 0.89186 1.15463 1.31175 1.47017 1.07682 1.05523 1.48283 1.20856 0.90601 0.86573 0.90180 1.21085 1.00837 0.90863 1.05189 1.20359 0.91538 0.97036 1.14737 1.17407 0.79309 0.82880 0.84187 1.90797 1.55364 1.64138 1.30836 1.48078 1.55074 1.23191 1.05375 1.22655 1.00223 0.97127 0.83954 1.21821 0.90144 0.88941 0.98517 1.44274 1.63077 1.22807 1.01989 1.18766 1.45105 0.92349 0.84262 0.89854 1.25233 0.98838 0.97222 0.94795 1.70075 1.43751 1.39068 0.99013 0.87639 0.81179 0.86420 0.78585 1.21815 1.22024 1.18011 1.21366 0.92831 0.98444 0.86782 1.22367 0.95154 0.83589 1.01801 0.88582 0.89378 0.88863 0.81943 0.78392 0.88160 0.88602 0.88569 0.90396 0.91572 0.94600 0.90376 0.92614 0.95327 0.90378 0.89277 0.90927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.82 36.01 0.35 -1.03 16 2 C 0.25 3.49 6.77 -81.73 -0.55 2.94 16 3 N -0.47 -6.98 10.37 -8.17 -0.08 -7.07 16 4 C 0.27 3.91 7.91 -155.33 -1.23 2.68 16 5 C -0.27 -3.17 10.91 -39.18 -0.43 -3.60 16 6 C 0.09 0.98 11.94 -17.56 -0.21 0.77 16 7 N -0.31 -4.10 12.49 30.49 0.38 -3.72 16 8 N -0.31 -4.46 3.88 -7.99 -0.03 -4.49 16 9 C 0.24 3.21 6.92 -80.77 -0.56 2.65 16 10 C -0.12 -1.35 9.71 36.01 0.35 -1.00 16 11 C -0.23 -3.24 3.61 -104.88 -0.38 -3.62 16 12 C 0.58 8.75 4.20 -12.44 -0.05 8.70 16 13 O -0.53 -9.26 16.51 5.29 0.09 -9.17 16 14 N -0.59 -8.91 2.94 -173.39 -0.51 -9.42 16 15 C 0.08 1.35 6.53 -3.37 -0.02 1.33 16 16 C 0.13 2.57 4.53 -3.37 -0.02 2.55 16 17 N -0.60 -12.72 2.70 -171.75 -0.46 -13.18 16 18 C -0.28 -7.09 9.86 -15.06 -0.15 -7.24 16 19 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 20 C 0.04 1.09 4.85 -17.43 -0.08 1.01 16 21 N -0.88 -25.20 13.97 55.49 0.78 -24.42 16 22 Si 0.83 19.91 26.43 -169.99 -4.49 15.42 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.26 -5.67 4.82 56.52 0.27 -5.39 16 26 C 0.13 2.31 6.67 -3.58 -0.02 2.29 16 27 C 0.09 1.43 6.59 -3.58 -0.02 1.40 16 28 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.09 1.16 7.13 -51.93 -0.37 0.79 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.16 1.54 8.06 -52.49 -0.42 1.11 16 32 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 0.98 8.11 -51.93 -0.42 0.55 16 35 H 0.10 1.05 7.12 -51.93 -0.37 0.68 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 0.98 6.24 -51.93 -0.32 0.65 16 38 H 0.04 0.70 6.69 -51.93 -0.35 0.35 16 39 H 0.08 1.66 5.59 -51.93 -0.29 1.37 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.08 1.33 7.93 -51.93 -0.41 0.92 16 43 H 0.09 1.29 6.99 -51.93 -0.36 0.92 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 356.31 15.07 5.37 5.37 Total: -1.00 -31.67 356.31 -7.96 -39.63 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.97 Total: 1.23 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -3.02 Total: 9.83 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.07 Total: -62.31 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.17 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.49 Total: 15.42 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.67 -7.96 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270440665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.550 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds