Wall clock time and date at job start Tue Mar 31 2020 04:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42898 * 109.47251 * 183.24811 * 3 2 1 5 5 C 1.35902 * 116.99804 * 180.02562 * 4 3 2 6 6 C 1.38748 * 120.05772 * 0.02562 * 5 4 3 7 7 C 1.38129 * 119.94111 * 180.02562 * 6 5 4 8 8 C 1.38288 * 120.05560 * 0.02562 * 7 6 5 9 9 C 1.38237 * 120.11298 * 359.97438 * 8 7 6 10 10 C 1.50698 * 119.97455 * 179.97438 * 9 8 7 11 11 C 1.50707 * 109.47106 * 89.99674 * 10 9 8 12 12 O 1.21275 * 120.00197 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99596 * 180.02562 * 11 10 9 14 14 C 1.46969 * 120.59184 * 179.97438 * 13 11 10 15 15 C 1.53365 * 108.63823 * 235.24762 * 14 13 11 16 16 N 1.46971 * 108.63406 * 310.57818 * 15 14 13 17 17 C 1.36933 * 120.58954 * 235.20080 * 16 15 14 18 18 H 1.08004 * 119.99676 * 151.84704 * 17 16 15 19 19 C 1.38804 * 120.00274 * 331.57456 * 17 16 15 20 20 N 1.31613 * 120.00257 * 342.82344 * 19 17 16 21 21 Si 1.86809 * 120.00042 * 162.81945 * 19 17 16 22 22 H 1.48504 * 109.46931 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46750 * 119.99895 * 21 19 17 24 24 H 1.48498 * 109.47076 * 239.99975 * 21 19 17 25 25 C 1.46964 * 118.81046 * 55.47559 * 16 15 14 26 26 C 1.46965 * 120.59893 * 0.02562 * 13 11 10 27 27 C 1.38165 * 120.05932 * 0.22895 * 9 8 7 28 28 H 1.09003 * 109.47044 * 63.24831 * 3 2 1 29 29 H 1.09004 * 109.47239 * 303.25258 * 3 2 1 30 30 H 1.07996 * 120.02715 * 0.04123 * 6 5 4 31 31 H 1.07999 * 119.96815 * 179.97438 * 7 6 5 32 32 H 1.07996 * 119.94191 * 179.97438 * 8 7 6 33 33 H 1.09008 * 109.47104 * 329.99990 * 10 9 8 34 34 H 1.08996 * 109.47686 * 210.00189 * 10 9 8 35 35 H 1.09001 * 109.60759 * 115.50025 * 14 13 11 36 36 H 1.08997 * 109.60686 * 354.99512 * 14 13 11 37 37 H 1.08993 * 109.61301 * 190.83327 * 15 14 13 38 38 H 1.09004 * 109.75220 * 70.40370 * 15 14 13 39 39 H 0.97004 * 120.00510 * 180.02562 * 20 19 17 40 40 H 1.08995 * 109.60931 * 64.27031 * 25 16 15 41 41 H 1.09004 * 109.60392 * 184.78099 * 25 16 15 42 42 H 1.09002 * 109.60509 * 244.49992 * 26 13 11 43 43 H 1.09000 * 109.60856 * 4.83277 * 26 13 11 44 44 H 1.07994 * 120.03496 * 179.74304 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0837 1.3460 0.0763 5 6 4.4310 1.5243 0.0859 6 6 5.2777 0.4270 0.0225 7 6 6.6466 0.6110 0.0329 8 6 7.1733 1.8875 0.1069 9 6 6.3318 2.9824 0.1701 10 6 6.9092 4.3720 0.2513 11 6 7.1025 4.9177 -1.1401 12 8 6.8007 4.2447 -2.1028 13 7 7.6108 6.1537 -1.3146 14 6 7.8053 6.6986 -2.6656 15 6 9.2711 7.1242 -2.8160 16 7 9.6412 7.9510 -1.6587 17 6 10.1584 9.2064 -1.8361 18 1 10.0120 9.9627 -1.0790 19 6 10.8757 9.5054 -2.9862 20 7 11.3502 8.5342 -3.7370 21 14 11.1676 11.2865 -3.4684 22 1 10.5363 12.1808 -2.4649 23 1 12.6277 11.5526 -3.5189 24 1 10.5714 11.5417 -4.8043 25 6 9.4519 7.4039 -0.3079 26 6 7.9814 6.9803 -0.1573 27 6 4.9618 2.8035 0.1643 28 1 2.9715 -0.4618 -0.9177 29 1 2.9716 -0.5627 0.8594 30 1 4.8668 -0.5701 -0.0351 31 1 7.3061 -0.2429 -0.0160 32 1 8.2439 2.0292 0.1153 33 1 7.8702 4.3368 0.7645 34 1 6.2261 5.0177 0.8032 35 1 7.1569 7.5631 -2.8082 36 1 7.5684 5.9345 -3.4058 37 1 9.3920 7.7022 -3.7321 38 1 9.9090 6.2412 -2.8537 39 1 11.8518 8.7431 -4.5406 40 1 10.1003 6.5389 -0.1694 41 1 9.6922 8.1668 0.4327 42 1 7.3455 7.8649 -0.1210 43 1 7.8579 6.4032 0.7590 44 1 4.3048 3.6589 0.2179 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270515523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:57 Heat of formation + Delta-G solvation = 20.852146 kcal Electronic energy + Delta-G solvation = -26933.117006 eV Core-core repulsion = 23045.335019 eV Total energy + Delta-G solvation = -3887.781987 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64521 -39.66807 -38.07413 -36.86555 -36.60658 -33.92531 -32.81197 -31.20836 -31.07083 -30.36633 -28.71227 -27.94161 -26.57001 -23.70923 -22.98972 -22.74955 -21.91787 -20.48023 -18.77968 -18.67490 -17.97599 -17.20541 -16.72171 -16.27103 -16.16047 -15.94341 -15.43000 -14.89669 -14.80687 -14.39547 -14.00107 -13.78918 -13.70407 -13.55497 -13.46181 -13.34161 -13.31506 -13.11205 -12.70982 -12.53450 -12.40159 -11.91317 -11.76468 -11.62497 -11.36950 -11.26844 -11.06708 -10.85531 -10.75422 -10.57293 -10.27104 -9.99610 -9.86197 -9.48864 -8.93353 -8.62044 -8.43314 -8.25209 -6.74238 -5.87555 -3.33116 1.11902 1.27698 1.67783 2.17755 2.93779 2.97259 3.32212 3.33459 3.40644 3.42268 3.59259 3.70611 4.36092 4.41861 4.51846 4.52326 4.64377 4.83370 4.90003 5.01350 5.16331 5.23553 5.28246 5.30164 5.46127 5.52117 5.69745 5.73745 5.84448 5.85778 6.02628 6.12198 6.24210 6.31494 6.36156 6.42417 6.48345 6.51002 6.66337 6.84443 6.89015 7.04753 7.23652 7.52627 7.70277 7.89414 8.33526 8.55466 9.09285 9.72082 10.28565 11.19778 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.028406 B = 0.002115 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.471516 B =13237.456895 C =13527.202610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.211 3.789 3 C 0.160 3.840 4 O -0.310 6.310 5 C 0.125 3.875 6 C -0.210 4.210 7 C -0.078 4.078 8 C -0.134 4.134 9 C -0.017 4.017 10 C -0.105 4.105 11 C 0.511 3.489 12 O -0.547 6.547 13 N -0.597 5.597 14 C 0.088 3.912 15 C 0.158 3.842 16 N -0.591 5.591 17 C -0.257 4.257 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.288 1.288 25 C 0.130 3.870 26 C 0.087 3.913 27 C -0.130 4.130 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.129 0.871 31 H 0.127 0.873 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.023 0.977 39 H 0.255 0.745 40 H 0.024 0.976 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.486 -16.062 10.982 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.077 5.077 2 C -0.108 4.108 3 C 0.081 3.919 4 O -0.223 6.223 5 C 0.081 3.919 6 C -0.229 4.229 7 C -0.096 4.096 8 C -0.153 4.153 9 C -0.018 4.018 10 C -0.145 4.145 11 C 0.298 3.702 12 O -0.425 6.425 13 N -0.330 5.330 14 C -0.036 4.036 15 C 0.032 3.968 16 N -0.314 5.314 17 C -0.387 4.387 18 H 0.086 0.914 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.733 3.267 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.215 1.215 25 C 0.003 3.997 26 C -0.038 4.038 27 C -0.149 4.149 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.147 0.853 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.117 0.883 38 H 0.041 0.959 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.353 -16.211 10.321 22.845 hybrid contribution 0.829 0.796 -0.347 1.200 sum -11.524 -15.415 9.974 21.677 Atomic orbital electron populations 1.81263 1.12463 1.05456 1.08480 1.28381 0.94265 0.94711 0.93476 1.19729 0.81932 0.84923 1.05272 1.86061 1.20558 1.26197 1.89486 1.18722 0.80554 0.94375 0.98287 1.21160 0.94568 0.97566 1.09560 1.20877 0.94236 0.97219 0.97301 1.20985 0.99977 0.92022 1.02284 1.19121 0.92173 0.94250 0.96255 1.20748 1.03415 0.93775 0.96517 1.20309 0.77766 0.81439 0.90691 1.90680 1.51523 1.58035 1.42286 1.48077 1.61517 1.14810 1.08592 1.22495 1.00994 0.97747 0.82320 1.21188 0.88130 0.94376 0.93120 1.44019 1.73007 1.15232 0.99142 1.19222 1.27555 0.86741 1.05159 0.91414 1.25093 0.97041 0.97509 0.99900 1.70025 1.37385 1.30311 1.16691 0.86212 0.77517 0.84612 0.78334 1.20187 1.21682 1.21454 1.21357 0.91523 0.97153 0.89670 1.22479 0.99591 0.94621 0.87068 1.20202 0.94544 0.94777 1.05341 0.87175 0.87218 0.85347 0.85536 0.85725 0.87617 0.87949 0.92230 0.90153 0.88300 0.95872 0.93476 0.95855 0.91462 0.91513 0.90871 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.35 18.54 42.15 0.78 -3.57 16 2 C 0.21 1.66 15.82 -20.76 -0.33 1.33 16 3 C 0.16 0.77 5.21 34.37 0.18 0.95 16 4 O -0.31 -2.77 10.09 -19.43 -0.20 -2.97 16 5 C 0.12 1.23 6.69 -39.21 -0.26 0.97 16 6 C -0.21 -1.67 9.04 -39.43 -0.36 -2.03 16 7 C -0.08 -0.69 10.04 -39.60 -0.40 -1.09 16 8 C -0.13 -1.44 9.70 -39.56 -0.38 -1.82 16 9 C -0.02 -0.20 4.37 -104.65 -0.46 -0.66 16 10 C -0.10 -1.20 4.17 -29.03 -0.12 -1.32 16 11 C 0.51 8.31 7.69 -10.98 -0.08 8.22 16 12 O -0.55 -10.81 15.44 5.56 0.09 -10.73 16 13 N -0.60 -10.26 2.95 -172.24 -0.51 -10.77 16 14 C 0.09 1.73 6.59 -3.60 -0.02 1.70 16 15 C 0.16 3.68 5.51 -3.60 -0.02 3.66 16 16 N -0.59 -13.98 2.96 -171.80 -0.51 -14.49 16 17 C -0.26 -6.69 9.57 -15.06 -0.14 -6.84 16 18 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 19 C 0.00 0.10 4.91 -17.44 -0.09 0.01 16 20 N -0.90 -25.37 11.20 55.49 0.62 -24.75 16 21 Si 0.90 20.94 29.59 -169.99 -5.03 15.91 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.13 2.44 6.70 -3.39 -0.02 2.42 16 26 C 0.09 1.31 6.52 -3.39 -0.02 1.29 16 27 C -0.13 -1.48 9.64 -39.43 -0.38 -1.86 16 28 H 0.11 0.29 7.66 -51.93 -0.40 -0.11 16 29 H 0.11 0.20 7.67 -51.93 -0.40 -0.20 16 30 H 0.13 0.56 6.30 -52.49 -0.33 0.23 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 32 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.11 1.02 7.67 -51.92 -0.40 0.62 16 34 H 0.10 0.94 7.85 -51.93 -0.41 0.54 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.08 1.60 6.99 -51.93 -0.36 1.24 16 37 H 0.10 2.56 6.00 -51.93 -0.31 2.25 16 38 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.62 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 1.19 7.93 -51.93 -0.41 0.77 16 42 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.81 5.91 -51.93 -0.31 0.50 16 44 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 371.17 15.07 5.59 5.59 Total: -1.00 -34.06 371.17 -7.90 -41.97 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.83 Total: -1.14 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -2.91 Total: 4.93 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.39 Total: -53.57 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.11 Total: -13.69 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.06 -7.90 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270515523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.817 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds