Wall clock time and date at job start Tue Mar 31 2020 05:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47157 * 180.29452 * 3 2 1 5 5 C 1.36938 * 120.00544 * 264.23255 * 4 3 2 6 6 H 1.07997 * 120.00652 * 196.86760 * 5 4 3 7 7 C 1.38816 * 119.99637 * 16.86416 * 5 4 3 8 8 N 1.31620 * 119.99962 * 22.14976 * 7 5 4 9 9 Si 1.86794 * 120.00181 * 202.14919 * 7 5 4 10 10 H 1.48505 * 109.46788 * 60.00083 * 9 7 5 11 11 H 1.48497 * 109.47333 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47301 * 300.00374 * 9 7 5 13 13 C 1.46502 * 119.99956 * 84.22450 * 4 3 2 14 14 C 1.52998 * 109.47766 * 270.00631 * 13 4 3 15 15 C 1.50699 * 109.47362 * 180.02562 * 14 13 4 16 16 O 1.21236 * 119.99946 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99834 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99835 * 179.97438 * 17 15 14 19 19 O 1.21537 * 120.00089 * 359.97438 * 18 17 15 20 20 N 1.34781 * 119.99779 * 179.97438 * 18 17 15 21 21 C 1.46498 * 119.99825 * 180.02562 * 20 18 17 22 22 C 1.50699 * 109.47094 * 180.02562 * 21 20 18 23 23 C 1.38236 * 119.99862 * 89.99947 * 22 21 20 24 24 C 1.38238 * 119.99792 * 179.97438 * 23 22 21 25 25 C 1.38232 * 120.00400 * 359.97438 * 24 23 22 26 26 C 1.38236 * 119.99586 * 0.27314 * 25 24 23 27 27 C 1.38229 * 120.00117 * 269.97952 * 22 21 20 28 28 H 4.40635 * 5.51378 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47312 * 60.29733 * 3 2 1 30 30 H 1.08999 * 109.47731 * 300.29636 * 3 2 1 31 31 H 0.96996 * 120.00172 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.46938 * 150.00197 * 13 4 3 33 33 H 1.09005 * 109.46790 * 30.00862 * 13 4 3 34 34 H 1.08993 * 109.46807 * 59.99504 * 14 13 4 35 35 H 1.09001 * 109.46684 * 300.00073 * 14 13 4 36 36 H 0.97002 * 120.00430 * 0.02562 * 17 15 14 37 37 H 0.96996 * 120.00024 * 0.02562 * 20 18 17 38 38 H 1.08995 * 109.47247 * 59.99661 * 21 20 18 39 39 H 1.09001 * 109.47309 * 299.99912 * 21 20 18 40 40 H 1.07999 * 120.00193 * 359.97438 * 23 22 21 41 41 H 1.08003 * 120.00080 * 180.02562 * 24 23 22 42 42 H 1.07999 * 120.00704 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.00296 * 179.73070 * 26 25 24 44 44 H 1.08000 * 120.00116 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3821 0.0071 5 6 3.4740 1.9942 -1.1696 6 1 4.0785 2.8891 -1.1578 7 6 3.0421 1.4643 -2.3778 8 7 1.9890 0.6756 -2.4115 9 14 3.9556 1.8707 -3.9557 10 1 5.3633 1.4109 -3.8451 11 1 3.2997 1.1850 -5.0980 12 1 3.9304 3.3386 -4.1783 13 6 3.2572 2.1088 1.2732 14 6 1.9469 2.8402 1.5714 15 6 2.0742 3.5883 2.8735 16 8 3.1103 3.5406 3.5011 17 7 1.0362 4.3101 3.3401 18 6 1.1499 4.9787 4.5049 19 8 2.1883 4.9302 5.1345 20 7 0.1120 5.7011 4.9713 21 6 0.2357 6.4282 6.2370 22 6 -1.0547 7.1492 6.5304 23 6 -2.0487 6.5195 7.2560 24 6 -3.2322 7.1810 7.5256 25 6 -3.4215 8.4723 7.0701 26 6 -2.4296 9.1001 6.3402 27 6 -1.2443 8.4402 6.0744 28 1 -1.0502 -0.0004 0.0002 29 1 3.0095 -0.5084 -0.8926 30 1 3.0096 -0.5176 0.8873 31 1 1.6869 0.3057 -3.2558 32 1 4.0687 2.8328 1.1989 33 1 3.4712 1.4044 2.0770 34 1 1.1355 2.1163 1.6456 35 1 1.7329 3.5446 0.7676 36 1 0.2070 4.3480 2.8382 37 1 -0.7169 5.7394 4.4690 38 1 1.0477 7.1515 6.1626 39 1 0.4490 5.7241 7.0413 40 1 -1.9006 5.5108 7.6123 41 1 -4.0086 6.6892 8.0928 42 1 -4.3460 8.9893 7.2810 43 1 -2.5791 10.1074 5.9805 44 1 -0.4674 8.9324 5.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281379889.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:54 Heat of formation + Delta-G solvation = 46.351361 kcal Electronic energy + Delta-G solvation = -26352.291621 eV Core-core repulsion = 22465.615363 eV Total energy + Delta-G solvation = -3886.676258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99593 -39.73139 -38.26555 -36.18335 -35.08269 -34.35715 -32.06450 -31.59881 -31.57478 -31.33668 -29.56067 -26.73401 -26.06771 -24.65173 -23.01202 -22.37430 -21.58199 -20.68416 -20.10607 -18.85383 -17.51099 -17.34246 -16.88359 -16.33831 -16.18189 -15.57978 -15.52268 -15.41876 -14.80147 -14.59096 -14.48694 -13.89135 -13.85617 -13.56901 -13.33687 -13.25667 -12.95783 -12.91520 -12.83020 -12.09135 -11.53596 -11.50006 -11.46538 -11.39648 -11.19870 -10.79041 -10.75641 -10.40163 -10.27917 -9.95546 -9.88848 -9.51627 -9.37811 -9.28953 -9.20903 -8.94113 -8.82222 -8.45459 -7.07328 -5.83393 -3.23854 0.78151 0.96208 2.34642 2.46414 3.35721 3.36801 3.43132 3.43254 3.45382 3.99339 4.13609 4.22923 4.33231 4.43056 4.50596 4.57922 4.70128 4.95372 5.00514 5.05118 5.29331 5.29641 5.30419 5.56176 5.61468 5.66545 5.75073 5.78952 5.95480 5.98929 6.07644 6.12711 6.15580 6.19502 6.32290 6.53491 6.61910 6.66063 6.68212 6.90863 7.21387 7.37863 7.49737 7.73287 8.23345 8.31910 8.40955 9.06166 9.13360 9.73462 10.19451 11.20172 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018349 B = 0.002055 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.571620 B =13618.866898 C =13688.032271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.091 4.091 3 C 0.263 3.737 4 N -0.584 5.584 5 C -0.266 4.266 6 H 0.076 0.924 7 C 0.004 3.996 8 N -0.889 5.889 9 Si 0.901 3.099 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.164 3.836 14 C -0.158 4.158 15 C 0.519 3.481 16 O -0.474 6.474 17 N -0.695 5.695 18 C 0.692 3.308 19 O -0.534 6.534 20 N -0.739 5.739 21 C 0.178 3.822 22 C -0.108 4.108 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.113 4.113 26 C -0.123 4.123 27 C -0.099 4.099 28 H 0.190 0.810 29 H 0.098 0.902 30 H 0.039 0.961 31 H 0.255 0.745 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.409 0.591 37 H 0.399 0.601 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.955 12.594 16.719 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.326 4.326 2 C -0.093 4.093 3 C 0.137 3.863 4 N -0.303 5.303 5 C -0.395 4.395 6 H 0.094 0.906 7 C -0.196 4.196 8 N -0.532 5.532 9 Si 0.731 3.269 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.036 3.964 14 C -0.201 4.201 15 C 0.306 3.694 16 O -0.343 6.343 17 N -0.361 5.361 18 C 0.393 3.607 19 O -0.406 6.406 20 N -0.397 5.397 21 C 0.054 3.946 22 C -0.109 4.109 23 C -0.118 4.118 24 C -0.141 4.141 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.118 4.118 28 H 0.207 0.793 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.112 0.888 35 H 0.116 0.884 36 H 0.243 0.757 37 H 0.233 0.767 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.285 12.400 17.511 24.244 hybrid contribution -1.274 0.505 -1.586 2.096 sum -12.559 12.905 15.925 24.039 Atomic orbital electron populations 1.24161 0.95285 1.04711 1.08403 1.24350 0.95292 0.96122 0.93586 1.17888 0.82832 0.86025 0.99527 1.44246 1.74387 1.09322 1.02331 1.19215 1.26417 1.10794 0.83099 0.90598 1.24910 0.96453 1.00335 0.97852 1.70110 1.21473 1.36204 1.25399 0.86391 0.79795 0.77818 0.82925 1.20952 1.21776 1.21022 1.20711 0.92769 0.94683 0.88218 1.22713 1.05496 1.00313 0.91598 1.21733 0.82084 0.77709 0.87864 1.90774 1.27186 1.58270 1.58029 1.44534 1.19349 1.49306 1.22901 1.16266 0.84135 0.78985 0.81339 1.91055 1.27447 1.64429 1.57695 1.45328 1.16007 1.53094 1.25313 1.20059 0.94198 0.94943 0.85380 1.19896 0.95916 0.95020 1.00068 1.21159 0.93085 0.99893 0.97628 1.21196 0.97515 0.95102 1.00268 1.21249 0.99107 0.95179 0.97577 1.21200 0.93747 1.00189 0.98939 1.21162 0.97610 0.94210 0.98777 0.79325 0.88396 0.94290 0.93440 0.92287 0.93159 0.88831 0.88362 0.75671 0.76738 0.90461 0.90473 0.85687 0.85816 0.85958 0.85812 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.49 19.25 29.55 0.57 -5.92 16 2 C -0.09 -2.07 10.54 -37.13 -0.39 -2.47 16 3 C 0.26 6.03 5.45 -6.83 -0.04 5.99 16 4 N -0.58 -13.79 2.50 -176.57 -0.44 -14.23 16 5 C -0.27 -6.89 9.66 -15.06 -0.15 -7.04 16 6 H 0.08 1.95 7.90 -52.49 -0.41 1.53 16 7 C 0.00 0.10 4.85 -17.43 -0.08 0.01 16 8 N -0.89 -24.22 9.50 55.49 0.53 -23.69 16 9 Si 0.90 20.99 29.61 -169.99 -5.03 15.95 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.16 3.37 4.99 -4.04 -0.02 3.35 16 14 C -0.16 -2.79 5.88 -27.88 -0.16 -2.95 16 15 C 0.52 8.94 7.77 -10.99 -0.09 8.85 16 16 O -0.47 -10.19 14.38 -18.21 -0.26 -10.45 16 17 N -0.69 -9.19 5.24 -15.78 -0.08 -9.28 16 18 C 0.69 9.93 8.50 -86.91 -0.74 9.19 16 19 O -0.53 -10.41 14.74 -18.47 -0.27 -10.68 16 20 N -0.74 -7.14 5.55 -66.43 -0.37 -7.51 16 21 C 0.18 1.60 5.80 -5.20 -0.03 1.57 16 22 C -0.11 -0.80 5.25 -104.63 -0.55 -1.35 16 23 C -0.10 -0.68 9.70 -39.58 -0.38 -1.06 16 24 C -0.12 -0.76 10.05 -39.58 -0.40 -1.15 16 25 C -0.11 -0.67 10.05 -39.58 -0.40 -1.07 16 26 C -0.12 -0.76 10.05 -39.58 -0.40 -1.16 16 27 C -0.10 -0.69 9.70 -39.58 -0.38 -1.07 16 28 H 0.19 3.31 7.80 -54.08 -0.42 2.89 16 29 H 0.10 2.46 6.42 -51.93 -0.33 2.13 16 30 H 0.04 0.80 7.98 -51.93 -0.41 0.38 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.25 7.98 -51.93 -0.41 0.83 16 33 H 0.05 1.00 7.91 -51.93 -0.41 0.59 16 34 H 0.09 1.65 7.20 -51.93 -0.37 1.27 16 35 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.41 3.71 8.71 -40.82 -0.36 3.36 16 37 H 0.40 2.77 8.48 -40.82 -0.35 2.42 16 38 H 0.08 0.74 8.09 -51.93 -0.42 0.32 16 39 H 0.08 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.55 8.06 -52.48 -0.42 0.12 16 42 H 0.12 0.50 8.06 -52.49 -0.42 0.07 16 43 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -34.54 383.62 -9.79 -44.32 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.00 Total: 6.06 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -3.64 Total: 3.72 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.37 Total: -54.71 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -0.53 Total: -21.13 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.54 -9.79 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281379889.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.674 kcal (2) G-P(sol) polarization free energy of solvation -34.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds