Wall clock time and date at job start Tue Mar 31 2020 05:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47267 * 229.17275 * 3 2 1 5 5 C 1.36938 * 120.00288 * 263.91782 * 4 3 2 6 6 H 1.07992 * 119.99991 * 199.38895 * 5 4 3 7 7 C 1.38813 * 119.99921 * 19.39055 * 5 4 3 8 8 N 1.31619 * 120.00093 * 22.27616 * 7 5 4 9 9 Si 1.86801 * 119.99865 * 202.28327 * 7 5 4 10 10 H 1.48496 * 109.47095 * 59.99805 * 9 7 5 11 11 H 1.48496 * 109.47214 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46988 * 299.99833 * 9 7 5 13 13 C 1.46500 * 119.99465 * 83.91786 * 4 3 2 14 14 C 1.50697 * 109.47189 * 90.00359 * 13 4 3 15 15 O 1.21276 * 120.00180 * 359.97438 * 14 13 4 16 16 N 1.34780 * 120.00001 * 180.02562 * 14 13 4 17 17 C 1.46497 * 120.00030 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.47055 * 324.99817 * 17 16 14 19 19 C 1.50700 * 109.47534 * 84.99509 * 17 16 14 20 20 O 1.21282 * 119.99801 * 0.02562 * 19 17 16 21 21 N 1.34769 * 120.00135 * 179.72515 * 19 17 16 22 22 C 1.46507 * 119.99898 * 180.02562 * 21 19 17 23 23 C 1.50704 * 109.47198 * 204.99712 * 17 16 14 24 24 C 1.38238 * 119.99574 * 319.72684 * 23 17 16 25 25 C 1.38234 * 119.99182 * 179.80906 * 24 23 17 26 26 C 1.38234 * 120.00669 * 0.39862 * 25 24 23 27 27 C 1.38234 * 119.99485 * 359.85296 * 26 25 24 28 28 C 1.38230 * 119.99833 * 139.99413 * 23 17 16 29 29 H 4.40642 * 5.51388 * 179.97438 * 4 1 2 30 30 H 1.09007 * 109.46890 * 109.17426 * 3 2 1 31 31 H 1.09003 * 109.47118 * 349.18221 * 3 2 1 32 32 H 0.96998 * 119.99716 * 179.97438 * 8 7 5 33 33 H 1.09002 * 109.47511 * 329.99691 * 13 4 3 34 34 H 1.09003 * 109.47040 * 210.00007 * 13 4 3 35 35 H 0.97002 * 120.00161 * 359.97438 * 16 14 13 36 36 H 0.96999 * 120.00425 * 359.97438 * 21 19 17 37 37 H 1.08992 * 109.47079 * 300.00109 * 22 21 19 38 38 H 1.09006 * 109.47097 * 60.00344 * 22 21 19 39 39 H 1.09001 * 109.47089 * 179.97438 * 22 21 19 40 40 H 1.07994 * 120.00223 * 359.97438 * 24 23 17 41 41 H 1.08001 * 119.99623 * 180.22808 * 25 24 23 42 42 H 1.07994 * 120.00414 * 179.83855 * 26 25 24 43 43 H 1.08003 * 119.99635 * 179.97438 * 27 26 25 44 44 H 1.08004 * 120.00577 * 359.97438 * 28 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9039 1.0451 5 6 3.4802 2.1910 0.7310 6 1 4.1183 2.7557 1.3943 7 6 3.0107 2.7698 -0.4401 8 7 1.9265 2.2985 -1.0185 9 14 3.9180 4.2176 -1.1953 10 1 5.3075 3.8123 -1.5273 11 1 3.2196 4.6485 -2.4328 12 1 3.9486 5.3425 -0.2263 13 6 3.2516 0.4300 2.4264 14 6 4.6241 -0.1537 2.6421 15 8 5.4251 -0.1724 1.7316 16 7 4.9613 -0.6558 3.8465 17 6 6.2953 -1.2236 4.0561 18 1 6.6261 -1.7204 3.1439 19 6 7.2613 -0.1213 4.4062 20 8 6.8735 1.0258 4.4746 21 7 8.5549 -0.4108 4.6494 22 6 9.4938 0.6609 4.9904 23 6 6.2444 -2.2236 5.1825 24 6 5.4878 -1.9581 6.3086 25 6 5.4381 -2.8771 7.3400 26 6 6.1513 -4.0577 7.2490 27 6 6.9120 -4.3207 6.1252 28 6 6.9587 -3.4035 5.0919 29 1 -1.0501 0.0000 -0.0003 30 1 3.0092 0.3384 -0.9707 31 1 3.0098 -1.0086 0.1929 32 1 1.5983 2.7032 -1.8367 33 1 2.4980 -0.3349 2.6135 34 1 3.1000 1.2645 3.1110 35 1 4.3206 -0.6411 4.5747 36 1 8.8642 -1.3288 4.5994 37 1 9.5343 1.3818 4.1740 38 1 9.1603 1.1604 5.9001 39 1 10.4853 0.2377 5.1514 40 1 4.9336 -1.0341 6.3813 41 1 4.8440 -2.6714 8.2182 42 1 6.1145 -4.7744 8.0560 43 1 7.4696 -5.2429 6.0543 44 1 7.5530 -3.6092 4.2138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281497229.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:54 Heat of formation + Delta-G solvation = 52.466164 kcal Electronic energy + Delta-G solvation = -27808.547960 eV Core-core repulsion = 23922.136859 eV Total energy + Delta-G solvation = -3886.411100 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.59816 -38.93446 -38.49092 -35.72362 -34.63344 -34.50201 -31.72461 -31.49535 -31.21738 -30.93936 -28.36675 -27.15095 -25.91839 -25.26643 -23.03860 -22.16908 -21.88744 -20.39177 -19.77461 -17.70161 -17.56418 -17.39897 -16.45626 -16.38996 -16.05266 -15.47565 -15.31764 -14.93574 -14.83569 -14.41948 -14.36941 -13.77414 -13.64696 -13.49232 -13.34950 -13.09992 -13.02455 -12.82106 -12.46308 -12.41036 -12.23639 -11.47056 -11.41431 -11.29156 -11.19927 -10.87324 -10.62425 -10.24213 -10.18708 -9.93168 -9.37949 -9.24618 -9.18621 -9.06409 -8.90205 -8.67185 -8.65980 -8.35938 -6.94027 -5.71485 -3.12478 0.95473 1.07839 2.67425 2.95273 3.35063 3.47913 3.52343 3.53131 3.58059 3.77091 4.23077 4.32768 4.42686 4.56432 4.63230 4.67349 4.80075 4.84177 5.11396 5.12293 5.18871 5.29606 5.40969 5.44012 5.59698 5.63829 5.70187 5.70882 5.79611 5.91700 6.11565 6.17635 6.19560 6.20997 6.32642 6.35358 6.63837 6.68368 6.77189 7.28457 7.40708 7.45620 7.84519 7.94064 8.24070 8.33613 8.94234 9.16093 9.23754 9.81657 10.26257 11.32341 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013974 B = 0.003441 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.205631 B = 8135.754899 C = 9597.613233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.096 4.096 3 C 0.271 3.729 4 N -0.559 5.559 5 C -0.259 4.259 6 H 0.072 0.928 7 C 0.007 3.993 8 N -0.887 5.887 9 Si 0.900 3.100 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.135 3.865 14 C 0.488 3.512 15 O -0.519 6.519 16 N -0.722 5.722 17 C 0.171 3.829 18 H 0.118 0.882 19 C 0.506 3.494 20 O -0.515 6.515 21 N -0.736 5.736 22 C 0.089 3.911 23 C -0.088 4.088 24 C -0.105 4.105 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.108 4.108 29 H 0.191 0.809 30 H 0.094 0.906 31 H 0.037 0.963 32 H 0.254 0.746 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.399 0.601 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 -14.898 17.496 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.099 4.099 3 C 0.146 3.854 4 N -0.276 5.276 5 C -0.388 4.388 6 H 0.090 0.910 7 C -0.192 4.192 8 N -0.530 5.530 9 Si 0.730 3.270 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.003 3.997 14 C 0.273 3.727 15 O -0.392 6.392 16 N -0.378 5.378 17 C 0.061 3.939 18 H 0.135 0.865 19 C 0.290 3.710 20 O -0.389 6.389 21 N -0.389 5.389 22 C -0.055 4.055 23 C -0.089 4.089 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.127 4.127 29 H 0.208 0.792 30 H 0.112 0.888 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.233 0.767 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 11.054 -13.903 16.622 24.326 hybrid contribution 0.190 0.507 -0.080 0.548 sum 11.244 -13.395 16.542 24.073 Atomic orbital electron populations 1.24160 0.95267 1.07293 1.05005 1.24244 0.95208 0.94218 0.96186 1.17668 0.82651 0.90655 0.94447 1.43553 1.73417 1.09812 1.00831 1.19094 1.24288 0.89004 1.06381 0.90996 1.24859 0.96109 0.98435 0.99780 1.70129 1.19290 1.43153 1.20444 0.86400 0.79831 0.82207 0.78599 1.20979 1.21740 1.20937 1.20642 0.90495 0.98760 0.89802 1.23313 0.92700 0.75982 0.80663 1.90625 1.52253 1.54094 1.42182 1.46157 1.12469 1.64318 1.14842 1.19504 0.85780 0.90798 0.97813 0.86470 1.21095 0.82803 0.90708 0.76430 1.90742 1.77452 1.21277 1.49384 1.45737 1.09264 1.11168 1.72766 1.21503 0.91816 0.91083 1.01087 1.19685 0.99072 0.95139 0.95028 1.21030 0.98593 0.99665 0.93090 1.21159 0.99300 0.94050 0.98690 1.21216 0.97026 0.97224 0.98106 1.21133 0.99284 0.99246 0.93727 1.21032 0.99340 0.93121 0.99201 0.79206 0.88803 0.94498 0.93518 0.91195 0.89874 0.76676 0.76823 0.92136 0.92411 0.90879 0.85677 0.85712 0.85957 0.85713 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.86 19.25 29.55 0.57 -6.29 16 2 C -0.10 -2.38 11.50 -37.12 -0.43 -2.81 16 3 C 0.27 6.80 5.41 -6.83 -0.04 6.77 16 4 N -0.56 -14.43 1.98 -177.95 -0.35 -14.79 16 5 C -0.26 -7.44 9.63 -15.06 -0.14 -7.58 16 6 H 0.07 2.11 7.92 -52.49 -0.42 1.69 16 7 C 0.01 0.21 4.82 -17.43 -0.08 0.12 16 8 N -0.89 -26.03 9.61 55.49 0.53 -25.50 16 9 Si 0.90 22.95 29.61 -169.99 -5.03 17.92 16 10 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 12 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.14 2.82 6.15 -5.20 -0.03 2.79 16 14 C 0.49 9.81 7.73 -10.99 -0.08 9.72 16 15 O -0.52 -12.56 16.09 5.56 0.09 -12.47 16 16 N -0.72 -10.99 4.56 -56.07 -0.26 -11.25 16 17 C 0.17 2.28 2.58 -70.23 -0.18 2.10 16 18 H 0.12 1.62 7.44 -51.93 -0.39 1.24 16 19 C 0.51 7.61 7.17 -10.99 -0.08 7.53 16 20 O -0.52 -10.16 16.32 5.56 0.09 -10.07 16 21 N -0.74 -8.10 5.61 -67.07 -0.38 -8.48 16 22 C 0.09 0.88 10.70 59.85 0.64 1.52 16 23 C -0.09 -0.89 4.73 -104.62 -0.49 -1.38 16 24 C -0.11 -1.00 9.05 -39.58 -0.36 -1.36 16 25 C -0.11 -0.90 10.05 -39.58 -0.40 -1.29 16 26 C -0.12 -0.83 10.05 -39.58 -0.40 -1.23 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.11 -0.87 9.49 -39.58 -0.38 -1.25 16 29 H 0.19 3.64 7.80 -54.09 -0.42 3.22 16 30 H 0.09 2.59 6.59 -51.93 -0.34 2.25 16 31 H 0.04 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 34 H 0.08 1.69 8.04 -51.93 -0.42 1.27 16 35 H 0.40 4.99 6.89 -40.82 -0.28 4.71 16 36 H 0.40 3.13 8.53 -40.82 -0.35 2.78 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.13 1.16 6.93 -52.49 -0.36 0.80 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 43 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 44 H 0.13 0.80 8.04 -52.48 -0.42 0.37 16 LS Contribution 384.73 15.07 5.80 5.80 Total: -1.00 -37.84 384.73 -7.70 -45.54 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.91 Total: 7.13 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: -2.28 Total: 6.16 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.45 Total: -60.01 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.18 Total: -22.54 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.84 -7.70 -45.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281497229.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.008 kcal (2) G-P(sol) polarization free energy of solvation -37.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds