Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47285 * 177.14524 * 3 2 1 5 5 C 1.36940 * 119.99663 * 270.00044 * 4 3 2 6 6 H 1.07998 * 119.99791 * 207.89473 * 5 4 3 7 7 C 1.38811 * 120.00222 * 27.89561 * 5 4 3 8 8 N 1.31620 * 120.00067 * 6.95778 * 7 5 4 9 9 Si 1.86803 * 120.00226 * 186.95683 * 7 5 4 10 10 H 1.48497 * 109.46915 * 90.00049 * 9 7 5 11 11 H 1.48500 * 109.47070 * 210.00154 * 9 7 5 12 12 H 1.48500 * 109.46975 * 330.00233 * 9 7 5 13 13 C 1.46497 * 120.00289 * 89.99588 * 4 3 2 14 14 C 1.50698 * 109.47439 * 271.34814 * 13 4 3 15 15 O 1.21277 * 119.99823 * 0.02562 * 14 13 4 16 16 N 1.34773 * 120.00480 * 179.97438 * 14 13 4 17 17 C 1.39437 * 120.00314 * 183.34843 * 16 14 13 18 18 C 1.39131 * 119.92821 * 324.21962 * 17 16 14 19 19 C 1.37667 * 120.07001 * 180.02562 * 18 17 16 20 20 C 1.39747 * 119.93186 * 0.02562 * 19 18 17 21 21 C 1.47598 * 120.07533 * 179.97438 * 20 19 18 22 22 O 1.21585 * 119.99509 * 335.43493 * 21 20 19 23 23 N 1.34770 * 119.99999 * 155.16599 * 21 20 19 24 24 C 1.46500 * 120.00177 * 174.92572 * 23 21 20 25 25 C 1.46503 * 120.00076 * 354.92169 * 23 21 20 26 26 C 1.39744 * 119.85008 * 0.24788 * 20 19 18 27 27 C 1.37672 * 119.92561 * 359.49371 * 26 20 19 28 28 H 4.40638 * 5.51482 * 179.97438 * 4 1 2 29 29 H 1.09001 * 109.47205 * 57.14012 * 3 2 1 30 30 H 1.09006 * 109.47374 * 297.14329 * 3 2 1 31 31 H 0.96996 * 120.00299 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47227 * 151.34831 * 13 4 3 33 33 H 1.09004 * 109.47042 * 31.35070 * 13 4 3 34 34 H 0.97008 * 119.99462 * 3.35951 * 16 14 13 35 35 H 1.08000 * 119.96436 * 359.97438 * 18 17 16 36 36 H 1.08004 * 120.03244 * 179.97438 * 19 18 17 37 37 H 1.08997 * 109.47376 * 89.99524 * 24 23 21 38 38 H 1.09002 * 109.47398 * 209.99648 * 24 23 21 39 39 H 1.09000 * 109.46795 * 329.99967 * 24 23 21 40 40 H 1.09002 * 109.46936 * 96.36104 * 25 23 21 41 41 H 1.09000 * 109.47006 * 216.35650 * 25 23 21 42 42 H 1.09002 * 109.47207 * 336.36024 * 25 23 21 43 43 H 1.08009 * 120.03955 * 179.74931 * 26 20 19 44 44 H 1.08001 * 119.96545 * 180.24808 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1337 1.3803 -0.0688 5 6 3.3616 1.9661 -1.2854 6 1 4.1025 2.7463 -1.3788 7 6 2.6405 1.5569 -2.3987 8 7 1.6453 0.7065 -2.2622 9 14 3.0825 2.2134 -4.0909 10 1 4.0868 1.3197 -4.7216 11 1 1.8629 2.2625 -4.9368 12 1 3.6490 3.5797 -3.9593 13 6 3.3774 2.1335 1.1639 14 6 2.1121 2.8376 1.5810 15 8 1.1056 2.7214 0.9145 16 7 2.0986 3.5957 2.6953 17 6 0.9109 4.1904 3.1196 18 6 -0.0023 4.6629 2.1823 19 6 -1.1756 5.2511 2.5980 20 6 -1.4485 5.3739 3.9630 21 6 -2.7052 6.0044 4.4122 22 8 -3.2811 6.7945 3.6894 23 7 -3.2170 5.7004 5.6213 24 6 -4.4019 6.4072 6.1140 25 6 -2.5885 4.6631 6.4431 26 6 -0.5265 4.9034 4.9018 27 6 0.6425 4.3114 4.4794 28 1 -1.0502 -0.0004 -0.0002 29 1 3.0095 -0.5568 -0.8632 30 1 3.0095 -0.4680 0.9145 31 1 1.1411 0.4209 -3.0400 32 1 4.1626 2.8694 0.9908 33 1 3.6890 1.4485 1.9526 34 1 2.9152 3.7276 3.2020 35 1 0.2098 4.5688 1.1275 36 1 -1.8839 5.6180 1.8699 37 1 -5.2994 5.8730 5.8022 38 1 -4.3687 6.4575 7.2023 39 1 -4.4192 7.4170 5.7039 40 1 -1.9108 5.1279 7.1592 41 1 -3.3584 4.1080 6.9790 42 1 -2.0287 3.9817 5.8024 43 1 -0.7325 5.0004 5.9576 44 1 1.3537 3.9440 5.2044 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281516698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = 81.902300 kcal Electronic energy + Delta-G solvation = -27597.983824 eV Core-core repulsion = 23712.849170 eV Total energy + Delta-G solvation = -3885.134654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60280 -39.60626 -37.76692 -35.86841 -35.68001 -34.19843 -31.50509 -31.20895 -31.04667 -30.19922 -28.12034 -27.27432 -26.28041 -25.79791 -23.26288 -22.69363 -21.73315 -19.91434 -19.83832 -17.62802 -17.41233 -17.29897 -16.69834 -16.40038 -16.08649 -15.76877 -15.02365 -14.84736 -14.69331 -14.25049 -14.03412 -13.63729 -13.57459 -13.36518 -13.24071 -13.17240 -12.97364 -12.66276 -12.39419 -12.37629 -12.32266 -11.82554 -11.44563 -11.34717 -11.09270 -10.91956 -10.81435 -10.29745 -10.13700 -10.07104 -9.85873 -9.16550 -8.97153 -8.87154 -8.79509 -8.46054 -8.21017 -7.90337 -6.95281 -5.69591 -3.35782 0.94289 1.47017 2.73763 2.83487 3.33049 3.39563 3.42254 3.44151 3.49563 3.95670 4.35043 4.43066 4.57580 4.66227 4.80248 4.90065 4.95791 5.00879 5.08189 5.29518 5.31735 5.38551 5.42391 5.49184 5.54140 5.59573 5.62795 5.81469 5.96652 6.06083 6.08908 6.16422 6.17577 6.20677 6.47647 6.51628 6.70630 6.74035 7.14167 7.18588 7.19686 7.64467 7.69773 7.83102 8.04998 8.29027 8.88417 9.07635 9.61123 9.69147 10.15404 11.22446 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.002817 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.571916 B = 9938.379865 C =10248.081482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.079 4.079 3 C 0.277 3.723 4 N -0.557 5.557 5 C -0.279 4.279 6 H 0.073 0.927 7 C 0.019 3.981 8 N -0.870 5.870 9 Si 0.906 3.094 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.279 1.279 13 C 0.131 3.869 14 C 0.460 3.540 15 O -0.466 6.466 16 N -0.693 5.693 17 C 0.195 3.805 18 C -0.132 4.132 19 C -0.037 4.037 20 C -0.173 4.173 21 C 0.564 3.436 22 O -0.540 6.540 23 N -0.622 5.622 24 C 0.087 3.913 25 C 0.065 3.935 26 C -0.084 4.084 27 C -0.171 4.171 28 H 0.179 0.821 29 H 0.085 0.915 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.404 0.596 35 H 0.147 0.853 36 H 0.131 0.869 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.142 0.858 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.858 5.595 20.231 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.082 4.082 3 C 0.153 3.847 4 N -0.275 5.275 5 C -0.408 4.408 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.510 5.510 9 Si 0.735 3.265 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.205 1.205 13 C -0.001 4.001 14 C 0.245 3.755 15 O -0.333 6.333 16 N -0.341 5.341 17 C 0.097 3.903 18 C -0.153 4.153 19 C -0.057 4.057 20 C -0.177 4.177 21 C 0.354 3.646 22 O -0.418 6.418 23 N -0.356 5.356 24 C -0.055 4.055 25 C -0.078 4.078 26 C -0.103 4.103 27 C -0.192 4.192 28 H 0.196 0.804 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.089 0.911 34 H 0.239 0.761 35 H 0.164 0.836 36 H 0.149 0.851 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.159 0.841 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.922 5.730 19.059 20.115 hybrid contribution -0.097 0.569 -0.619 0.847 sum -3.019 6.299 18.440 19.718 Atomic orbital electron populations 1.23776 0.94951 1.03824 1.08970 1.23438 0.94612 0.96866 0.93319 1.17680 0.83828 0.85205 0.98034 1.44008 1.74289 1.08584 1.00575 1.19092 1.16411 1.20971 0.84295 0.90961 1.25311 0.95151 0.98881 0.98971 1.69941 1.19252 1.33655 1.28125 0.86263 0.77249 0.78758 0.84184 1.21274 1.21675 1.20461 1.21186 0.92483 0.95389 0.91078 1.24046 0.94530 0.78309 0.78643 1.90783 1.34375 1.58281 1.49886 1.44453 1.09375 1.50668 1.29561 1.18186 0.88381 0.91284 0.92410 1.21361 0.94329 0.98289 1.01290 1.21108 0.96131 0.94321 0.94119 1.19638 0.96015 1.07442 0.94620 1.18422 0.84448 0.81232 0.80459 1.90764 1.61687 1.35825 1.53514 1.47592 1.30428 1.39229 1.18360 1.21614 0.86891 0.97982 0.99021 1.22428 0.98727 0.91037 0.95577 1.21650 0.92922 0.95940 0.99768 1.20854 0.98706 1.05531 0.94064 0.80358 0.89726 0.94797 0.93269 0.90072 0.91059 0.76102 0.83583 0.85086 0.92732 0.91265 0.90576 0.92116 0.91398 0.88865 0.84115 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.46 18.58 29.55 0.55 -6.91 16 2 C -0.08 -2.00 9.29 -37.13 -0.34 -2.35 16 3 C 0.28 6.43 5.51 -6.83 -0.04 6.40 16 4 N -0.56 -12.99 2.07 -177.96 -0.37 -13.35 16 5 C -0.28 -7.24 9.61 -15.06 -0.14 -7.39 16 6 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 7 C 0.02 0.50 5.18 -17.43 -0.09 0.41 16 8 N -0.87 -24.81 8.55 55.49 0.47 -24.33 16 9 Si 0.91 21.57 29.56 -169.99 -5.02 16.55 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.13 2.35 6.19 -5.20 -0.03 2.32 16 14 C 0.46 8.72 7.72 -10.99 -0.08 8.64 16 15 O -0.47 -11.25 12.04 5.56 0.07 -11.19 16 16 N -0.69 -9.85 5.31 -9.86 -0.05 -9.90 16 17 C 0.19 2.90 6.28 -83.74 -0.53 2.37 16 18 C -0.13 -2.28 8.65 -39.46 -0.34 -2.62 16 19 C -0.04 -0.60 9.58 -39.23 -0.38 -0.97 16 20 C -0.17 -2.43 5.49 -104.95 -0.58 -3.00 16 21 C 0.56 8.09 7.48 -12.44 -0.09 8.00 16 22 O -0.54 -9.60 16.23 5.29 0.09 -9.51 16 23 N -0.62 -6.58 3.27 -190.74 -0.62 -7.21 16 24 C 0.09 0.74 10.43 59.85 0.62 1.36 16 25 C 0.06 0.46 8.70 59.85 0.52 0.98 16 26 C -0.08 -0.93 7.50 -39.23 -0.29 -1.22 16 27 C -0.17 -1.97 9.95 -39.46 -0.39 -2.36 16 28 H 0.18 4.07 7.80 -54.08 -0.42 3.65 16 29 H 0.08 2.10 7.17 -51.93 -0.37 1.73 16 30 H 0.03 0.67 7.91 -51.93 -0.41 0.25 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 33 H 0.07 1.04 7.91 -51.93 -0.41 0.63 16 34 H 0.40 4.04 8.82 -40.82 -0.36 3.68 16 35 H 0.15 2.96 6.30 -52.49 -0.33 2.62 16 36 H 0.13 2.13 7.84 -52.48 -0.41 1.72 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 39 H 0.08 0.74 7.50 -51.93 -0.39 0.35 16 40 H 0.06 0.31 7.16 -51.93 -0.37 -0.07 16 41 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.09 0.75 5.08 -51.93 -0.26 0.48 16 43 H 0.14 1.10 4.48 -52.48 -0.24 0.87 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 369.02 15.07 5.56 5.56 Total: -1.00 -36.04 369.02 -7.15 -43.19 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.63 Total: 6.54 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.64 Total: 3.65 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.57 Total: -54.79 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.15 Total: -20.70 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.04 -7.15 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281516698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.094 kcal (2) G-P(sol) polarization free energy of solvation -36.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds