Wall clock time and date at job start Tue Mar 31 2020 04:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47456 * 351.61207 * 3 2 1 5 5 C 1.37093 * 120.00074 * 264.14251 * 4 3 2 6 6 H 1.08003 * 120.00154 * 197.43574 * 5 4 3 7 7 C 1.38948 * 119.99890 * 17.42753 * 5 4 3 8 8 N 1.31415 * 120.00087 * 21.53413 * 7 5 4 9 9 Si 1.86802 * 119.99878 * 201.52449 * 7 5 4 10 10 H 1.48500 * 109.46970 * 90.00892 * 9 7 5 11 11 H 1.48504 * 109.46899 * 210.00320 * 9 7 5 12 12 H 1.48494 * 109.47412 * 330.00305 * 9 7 5 13 13 C 1.34773 * 119.99997 * 84.13624 * 4 3 2 14 14 O 1.21296 * 120.00158 * 179.97438 * 13 4 3 15 15 C 1.50708 * 120.00265 * 0.02562 * 13 4 3 16 16 N 1.46497 * 109.47460 * 179.97438 * 15 13 4 17 17 C 1.34770 * 120.00219 * 179.97438 * 16 15 13 18 18 O 1.21589 * 119.99787 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00250 * 180.02562 * 17 16 15 20 20 C 1.46497 * 120.00268 * 180.02562 * 19 17 16 21 21 C 1.50702 * 109.47591 * 179.97438 * 20 19 17 22 22 C 1.38229 * 119.99696 * 89.99802 * 21 20 19 23 23 C 1.38237 * 119.99923 * 179.73138 * 22 21 20 24 24 C 1.38240 * 119.99900 * 0.25472 * 23 22 21 25 25 C 1.50697 * 120.00072 * 180.02562 * 24 23 22 26 26 C 1.38240 * 119.99849 * 0.02562 * 24 23 22 27 27 C 1.38236 * 120.00065 * 359.96155 * 26 24 23 28 28 H 4.40644 * 5.51405 * 180.02562 * 4 1 2 29 29 H 1.08997 * 109.47126 * 231.60622 * 3 2 1 30 30 H 1.09002 * 109.46790 * 111.61499 * 3 2 1 31 31 H 0.96996 * 120.00167 * 179.97438 * 8 7 5 32 32 H 1.08997 * 109.46764 * 59.99759 * 15 13 4 33 33 H 1.09001 * 109.46796 * 299.99751 * 15 13 4 34 34 H 0.97006 * 119.99859 * 0.02562 * 16 15 13 35 35 H 0.96999 * 120.00222 * 0.02562 * 19 17 16 36 36 H 1.09004 * 109.46976 * 60.00087 * 20 19 17 37 37 H 1.09001 * 109.47261 * 300.00292 * 20 19 17 38 38 H 1.08000 * 120.00224 * 0.02562 * 22 21 20 39 39 H 1.08000 * 120.00364 * 180.27842 * 23 22 21 40 40 H 1.08997 * 109.47166 * 89.99828 * 25 24 23 41 41 H 1.08996 * 109.47058 * 209.99995 * 25 24 23 42 42 H 1.09000 * 109.47038 * 329.99632 * 25 24 23 43 43 H 1.08001 * 119.99995 * 179.97438 * 26 24 23 44 44 H 1.07995 * 120.00240 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3655 0.2015 5 6 3.4779 -1.7925 1.4583 6 1 4.0909 -2.6732 1.5809 7 6 3.0371 -1.0920 2.5743 8 7 1.9853 -0.3091 2.4856 9 14 3.9393 -1.2633 4.2010 10 1 5.0070 -0.2346 4.2855 11 1 2.9816 -1.0756 5.3204 12 1 4.5464 -2.6155 4.2904 13 6 3.2476 -2.2027 -0.8487 14 8 3.6529 -3.3337 -0.6820 15 6 2.8710 -1.7333 -2.2304 16 7 3.0821 -2.8200 -3.1899 17 6 2.8099 -2.6284 -4.4958 18 8 2.3896 -1.5533 -4.8778 19 7 3.0036 -3.6283 -5.3784 20 6 2.7083 -3.4198 -6.7981 21 6 3.0087 -4.6821 -7.5645 22 6 2.0239 -5.6365 -7.7375 23 6 2.2979 -6.7919 -8.4453 24 6 3.5583 -6.9952 -8.9755 25 6 3.8568 -8.2545 -9.7475 26 6 4.5448 -6.0434 -8.7974 27 6 4.2707 -4.8878 -8.0899 28 1 -1.0498 -0.0004 -0.0001 29 1 3.0090 0.6390 0.8054 30 1 3.0091 0.3794 -0.9554 31 1 1.6773 0.1796 3.2648 32 1 3.4912 -0.8803 -2.5059 33 1 1.8218 -1.4380 -2.2404 34 1 3.4171 -3.6779 -2.8851 35 1 3.3386 -4.4861 -5.0737 36 1 3.3247 -2.6068 -7.1818 37 1 1.6552 -3.1644 -6.9164 38 1 1.0390 -5.4774 -7.3238 39 1 1.5272 -7.5356 -8.5844 40 1 3.6379 -8.0940 -10.8032 41 1 4.9094 -8.5119 -9.6298 42 1 3.2391 -9.0684 -9.3680 43 1 5.5296 -6.2023 -9.2113 44 1 5.0412 -4.1440 -7.9511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282033536.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:53 Heat of formation + Delta-G solvation = 26.941542 kcal Electronic energy + Delta-G solvation = -26366.513928 eV Core-core repulsion = 22478.995997 eV Total energy + Delta-G solvation = -3887.517931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -40.11481 -39.46697 -38.55131 -35.53517 -35.17633 -33.85063 -32.72521 -32.13585 -31.27954 -31.22466 -28.89176 -27.31921 -26.32947 -24.76568 -23.91437 -23.01292 -21.08438 -20.70306 -19.43122 -18.42417 -17.94803 -16.71808 -16.54477 -16.00784 -15.96753 -15.68022 -15.29256 -15.21453 -14.63549 -14.46728 -14.32312 -14.09490 -13.85666 -13.71795 -13.52750 -13.26166 -12.85800 -12.78224 -12.41240 -12.33377 -12.24996 -12.02724 -11.76177 -11.60044 -11.34059 -11.25271 -11.05881 -10.53814 -10.39034 -10.06404 -9.38832 -9.35220 -9.22223 -9.12713 -8.94726 -8.89062 -8.60847 -8.53291 -7.96890 -6.40517 -3.94005 0.92132 1.11819 2.87451 3.10431 3.22538 3.26728 3.43684 3.51064 3.61183 3.84707 4.04374 4.13787 4.40850 4.50575 4.56056 4.62944 4.73594 4.87054 4.90323 4.98748 5.16895 5.22602 5.30005 5.42316 5.44024 5.48446 5.57859 5.66951 5.79542 5.80429 5.88842 6.05792 6.09115 6.28273 6.28576 6.33820 6.50447 6.69718 6.70143 6.76331 7.01159 7.13185 7.49690 7.93452 8.26995 8.31947 8.80210 8.83067 9.01957 9.25262 9.75935 10.59795 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.002065 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.296663 B =13553.159804 C =14241.667200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.118 4.118 3 C 0.228 3.772 4 N -0.430 5.430 5 C -0.318 4.318 6 H 0.106 0.894 7 C 0.033 3.967 8 N -0.857 5.857 9 Si 0.924 3.076 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.439 3.561 14 O -0.585 6.585 15 C 0.128 3.872 16 N -0.725 5.725 17 C 0.705 3.295 18 O -0.597 6.597 19 N -0.746 5.746 20 C 0.183 3.817 21 C -0.112 4.112 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.116 4.116 26 C -0.124 4.124 27 C -0.095 4.095 28 H 0.200 0.800 29 H 0.113 0.887 30 H 0.066 0.934 31 H 0.270 0.730 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.406 0.594 35 H 0.397 0.603 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.122 0.878 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.001 -8.196 -20.260 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.120 4.120 3 C 0.105 3.895 4 N -0.147 5.147 5 C -0.445 4.445 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.227 3.773 14 O -0.471 6.471 15 C -0.001 4.001 16 N -0.383 5.383 17 C 0.405 3.595 18 O -0.476 6.476 19 N -0.402 5.402 20 C 0.059 3.941 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.082 4.082 25 C -0.173 4.173 26 C -0.142 4.142 27 C -0.113 4.113 28 H 0.217 0.783 29 H 0.130 0.870 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.243 0.757 35 H 0.231 0.769 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.143 0.857 39 H 0.141 0.859 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.140 0.860 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.727 -7.599 -20.338 21.780 hybrid contribution 0.211 -0.693 1.288 1.477 sum 1.939 -8.292 -19.051 20.867 Atomic orbital electron populations 1.24283 0.95394 1.01483 1.06058 1.23070 0.94287 0.98913 0.95689 1.18336 0.84467 0.86005 1.00739 1.43640 1.55008 1.09220 1.06858 1.19683 1.30418 1.13925 0.80453 0.87597 1.25337 0.95066 0.97175 0.99682 1.70101 1.19353 1.28688 1.31277 0.85961 0.79130 0.79052 0.80791 1.20229 1.21065 1.19371 1.19920 0.85357 0.85944 0.86032 1.90495 1.51969 1.19449 1.85148 1.20899 1.02356 0.89287 0.87508 1.44803 1.70639 1.17690 1.05138 1.15844 0.78878 0.83978 0.80845 1.90907 1.52849 1.25104 1.78771 1.45099 1.72735 1.15436 1.06966 1.19963 1.01613 0.93850 0.78704 1.19924 0.94349 0.96506 1.00423 1.21132 0.99216 0.93269 0.97711 1.21051 0.96428 0.97864 0.98841 1.19998 0.93830 0.96383 0.97991 1.20815 1.02382 0.94516 0.99565 1.21047 0.99149 0.94084 0.99922 1.21124 0.96064 0.97394 0.96758 0.78320 0.86965 0.91594 0.91948 0.90146 0.89709 0.75674 0.76888 0.90854 0.90848 0.85688 0.85948 0.91113 0.91468 0.91465 0.85955 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.30 19.25 29.55 0.57 -4.73 16 2 C -0.12 -2.65 10.88 -37.12 -0.40 -3.05 16 3 C 0.23 4.98 4.91 -6.83 -0.03 4.94 16 4 N -0.43 -10.57 2.60 -117.93 -0.31 -10.87 16 5 C -0.32 -8.47 9.33 -14.94 -0.14 -8.61 16 6 H 0.11 2.97 7.38 -52.48 -0.39 2.58 16 7 C 0.03 0.83 4.87 -17.47 -0.08 0.74 16 8 N -0.86 -22.02 9.48 55.50 0.53 -21.49 16 9 Si 0.92 19.98 29.60 -169.99 -5.03 14.95 16 10 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 13 C 0.44 10.33 7.63 -10.98 -0.08 10.25 16 14 O -0.59 -15.18 15.31 5.54 0.08 -15.09 16 15 C 0.13 2.51 4.76 -5.19 -0.02 2.48 16 16 N -0.73 -12.76 5.53 -66.41 -0.37 -13.13 16 17 C 0.70 11.87 8.57 -86.93 -0.74 11.13 16 18 O -0.60 -12.00 16.34 5.29 0.09 -11.91 16 19 N -0.75 -9.44 5.55 -66.41 -0.37 -9.81 16 20 C 0.18 2.02 5.80 -5.19 -0.03 1.99 16 21 C -0.11 -1.05 5.25 -104.62 -0.55 -1.60 16 22 C -0.09 -0.84 9.70 -39.58 -0.38 -1.22 16 23 C -0.12 -1.00 9.70 -39.58 -0.38 -1.38 16 24 C -0.08 -0.64 5.88 -104.62 -0.62 -1.25 16 25 C -0.12 -0.63 10.01 36.00 0.36 -0.27 16 26 C -0.12 -0.99 9.70 -39.58 -0.38 -1.37 16 27 C -0.09 -0.83 9.70 -39.58 -0.38 -1.21 16 28 H 0.20 3.41 7.80 -54.10 -0.42 2.99 16 29 H 0.11 2.56 6.44 -51.93 -0.33 2.22 16 30 H 0.07 1.22 6.69 -51.93 -0.35 0.87 16 31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.08 1.48 7.42 -51.93 -0.39 1.10 16 33 H 0.08 1.72 7.51 -51.93 -0.39 1.33 16 34 H 0.41 6.92 7.45 -40.82 -0.30 6.62 16 35 H 0.40 4.33 8.48 -40.82 -0.35 3.98 16 36 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -32.33 381.87 -8.78 -41.12 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: -5.84 Total: 13.67 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -3.32 Total: 6.82 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: -0.52 Total: -55.31 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: 0.17 Total: -27.01 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.33 -8.78 -41.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282033536.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.059 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds