Wall clock time and date at job start Tue Mar 31 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35121 * 125.55331 * 2 1 4 4 C 1.40986 * 108.24065 * 179.97438 * 3 2 1 5 5 N 1.33300 * 126.35517 * 180.02562 * 4 3 2 6 6 C 1.32906 * 120.00645 * 359.97438 * 5 4 3 7 7 O 1.21594 * 119.99528 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00668 * 180.02562 * 6 5 4 9 9 H 1.09013 * 109.50604 * 299.99498 * 8 6 5 10 10 C 1.53143 * 109.51365 * 179.90258 * 8 6 5 11 11 C 1.53264 * 109.49842 * 170.58090 * 10 8 6 12 12 N 1.46470 * 108.79371 * 50.37725 * 11 10 8 13 13 C 1.36312 * 127.77787 * 162.84554 * 12 11 10 14 14 C 1.34858 * 106.69151 * 180.08516 * 13 12 11 15 15 N 1.34291 * 108.06960 * 359.97438 * 14 13 12 16 16 C 1.30097 * 109.21309 * 359.97438 * 15 14 13 17 17 C 1.51063 * 127.37302 * 180.15154 * 16 15 14 18 18 N 1.37282 * 107.28538 * 359.75313 * 4 3 2 19 19 H 0.97000 * 126.35315 * 180.25610 * 18 4 3 20 20 N 1.36338 * 125.54414 * 179.97438 * 2 1 3 21 21 C 1.46491 * 125.86933 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.46957 * 84.99981 * 21 20 2 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99698 * 0.28408 * 24 22 21 26 26 Si 1.86794 * 119.99837 * 180.27476 * 24 22 21 27 27 H 1.48501 * 109.47188 * 90.00793 * 26 24 22 28 28 H 1.48501 * 109.47085 * 210.00372 * 26 24 22 29 29 H 1.48498 * 109.47634 * 330.00608 * 26 24 22 30 30 H 1.09004 * 109.46885 * 270.02275 * 1 2 3 31 31 H 1.09005 * 109.47210 * 30.02378 * 1 2 3 32 32 H 1.08999 * 109.47394 * 150.02364 * 1 2 3 33 33 H 1.07996 * 125.87630 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.47010 * 290.58970 * 10 8 6 35 35 H 1.09003 * 109.47042 * 50.57149 * 10 8 6 36 36 H 1.09002 * 109.58609 * 170.17117 * 11 10 8 37 37 H 1.09004 * 109.58324 * 290.44533 * 11 10 8 38 38 H 1.08001 * 126.65785 * 0.10657 * 13 12 11 39 39 H 1.07996 * 125.97181 * 180.02562 * 14 13 12 40 40 H 1.08997 * 109.76311 * 44.34391 * 17 16 15 41 41 H 1.08999 * 109.68499 * 283.69268 * 17 16 15 42 42 H 1.09004 * 109.47166 * 325.00247 * 21 20 2 43 43 H 1.08994 * 109.47507 * 204.99953 * 21 20 2 44 44 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0993 0.0000 4 6 3.6386 0.6798 0.0006 5 7 4.7125 1.4695 0.0013 6 6 4.5661 2.7905 0.0009 7 8 3.4524 3.2786 -0.0005 8 6 5.7800 3.6833 0.0011 9 1 6.3773 3.4853 0.8912 10 6 5.3369 5.1492 -0.0019 11 6 6.5529 6.0517 0.2347 12 7 7.6158 5.6648 -0.6958 13 6 8.7185 6.3839 -1.0497 14 6 9.4069 5.6292 -1.9300 15 7 8.7372 4.4785 -2.1055 16 6 7.6643 4.4912 -1.3697 17 6 6.6207 3.4054 -1.2514 18 7 3.6380 -0.6931 0.0066 19 1 4.4189 -1.2684 0.0119 20 7 2.2995 -1.1093 0.0005 21 6 1.8326 -2.4978 0.0016 22 6 1.5546 -2.9355 -1.4134 23 1 1.7106 -2.2482 -2.2318 24 6 1.1071 -4.2154 -1.6638 25 7 0.9175 -5.0524 -0.6673 26 14 0.7699 -4.7602 -3.4184 27 1 2.0044 -5.3447 -4.0012 28 1 -0.3096 -5.7801 -3.4213 29 1 0.3467 -3.5893 -4.2278 30 1 -0.3633 0.0004 1.0277 31 1 -0.3634 0.8898 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.9487 2.1230 -0.0004 34 1 4.8871 5.3909 -0.9649 35 1 4.6060 5.3094 0.7907 36 1 6.2756 7.0914 0.0608 37 1 6.9016 5.9333 1.2606 38 1 8.9886 7.3671 -0.6937 39 1 10.3353 5.9021 -2.4096 40 1 7.1077 2.4346 -1.1599 41 1 5.9800 3.4143 -2.1332 42 1 0.9191 -2.5735 0.5915 43 1 2.5997 -3.1388 0.4361 44 1 0.6023 -5.9528 -0.8435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328989352.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:25 Heat of formation + Delta-G solvation = 116.856484 kcal Electronic energy + Delta-G solvation = -27141.010919 eV Core-core repulsion = 23289.684744 eV Total energy + Delta-G solvation = -3851.326175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28742 -41.03284 -38.95565 -36.13814 -34.39375 -33.27024 -33.17693 -32.33358 -30.77792 -29.77172 -28.70917 -27.60879 -26.82457 -24.69913 -23.66735 -22.78956 -21.49220 -21.17852 -19.76552 -19.19351 -18.75877 -17.20953 -17.06864 -16.82984 -15.95042 -15.80064 -15.23919 -15.13005 -14.83861 -14.61896 -14.18193 -14.06395 -13.81538 -13.69951 -13.34703 -13.03800 -12.86969 -12.81579 -12.73603 -12.38175 -12.14710 -11.93993 -11.88100 -11.69209 -11.34773 -11.10319 -11.07439 -11.03195 -10.55883 -10.40810 -9.92622 -9.59295 -9.51688 -9.35865 -8.96851 -8.94484 -8.43145 -8.32542 -7.06118 -6.55567 -4.70986 1.54118 1.96109 2.04778 2.75368 2.85090 3.02960 3.11381 3.15033 3.17396 3.97530 4.04998 4.15636 4.38919 4.45743 4.53339 4.68292 4.76491 4.89183 4.94622 5.14377 5.19199 5.22626 5.35425 5.42356 5.49802 5.62991 5.70980 5.76300 5.78502 5.87235 6.04953 6.08339 6.16015 6.19953 6.32709 6.42061 6.45918 6.52662 6.69234 6.76581 7.16527 7.32226 7.40568 7.45879 7.56312 7.89017 8.14670 8.23424 8.38270 9.00014 9.27068 10.47608 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020389 B = 0.002368 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.930070 B =11820.162588 C =12663.107389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.471 3.529 5 N -0.699 5.699 6 C 0.501 3.499 7 O -0.586 6.586 8 C -0.083 4.083 9 H 0.094 0.906 10 C -0.118 4.118 11 C 0.104 3.896 12 N -0.457 5.457 13 C -0.063 4.063 14 C -0.034 4.034 15 N -0.493 5.493 16 C 0.218 3.782 17 C -0.014 4.014 18 N -0.464 5.464 19 H 0.446 0.554 20 N -0.336 5.336 21 C 0.253 3.747 22 C -0.558 4.558 23 H 0.070 0.930 24 C 0.071 3.929 25 N -0.885 5.885 26 Si 0.909 3.091 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.269 1.269 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.184 0.816 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.171 0.829 39 H 0.167 0.833 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.525 15.750 3.976 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.063 3.937 3 C -0.364 4.364 4 C 0.223 3.777 5 N -0.464 5.464 6 C 0.286 3.714 7 O -0.469 6.469 8 C -0.105 4.105 9 H 0.112 0.888 10 C -0.156 4.156 11 C -0.018 4.018 12 N -0.140 5.140 13 C -0.196 4.196 14 C -0.182 4.182 15 N -0.212 5.212 16 C -0.045 4.045 17 C -0.053 4.053 18 N -0.185 5.185 19 H 0.294 0.706 20 N -0.122 5.122 21 C 0.136 3.864 22 C -0.596 4.596 23 H 0.088 0.912 24 C -0.134 4.134 25 N -0.522 5.522 26 Si 0.735 3.265 27 H -0.201 1.201 28 H -0.206 1.206 29 H -0.194 1.194 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.201 0.799 34 H 0.096 0.904 35 H 0.116 0.884 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.189 0.811 39 H 0.184 0.816 40 H 0.125 0.875 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.830 14.557 3.631 16.096 hybrid contribution -0.301 0.275 -0.350 0.538 sum 5.529 14.832 3.281 16.166 Atomic orbital electron populations 1.20665 0.86316 1.05149 1.03679 1.21394 0.94591 0.85577 0.92125 1.22262 0.91171 1.00292 1.22706 1.19187 0.91697 0.82096 0.84756 1.68692 1.28050 1.05280 1.44362 1.20326 0.88362 0.86488 0.76249 1.90540 1.27001 1.79220 1.50102 1.20938 0.96294 0.93692 0.99553 0.88795 1.21752 0.95755 0.93079 1.04987 1.22058 0.86750 1.00323 0.92697 1.45486 1.19035 1.15125 1.34355 1.22511 0.91169 1.00463 1.05482 1.22348 1.01891 0.91923 1.02069 1.70085 1.05440 1.22717 1.22926 1.23497 0.97443 0.88712 0.94810 1.20030 0.92340 0.95055 0.97881 1.44572 0.98959 1.05331 1.69655 0.70649 1.47995 0.92765 1.08342 1.63080 1.20080 0.96545 0.70055 0.99673 1.21364 1.47985 0.98690 0.91539 0.91216 1.24949 0.94186 0.95765 0.98507 1.69896 1.43945 1.06896 1.31454 0.86296 0.78409 0.78764 0.82999 1.20139 1.20644 1.19379 0.89773 0.89271 0.88928 0.79949 0.90350 0.88413 0.89193 0.89753 0.81125 0.81567 0.87526 0.89463 0.91363 0.93023 0.91781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.92 36.00 0.36 -0.97 16 2 C 0.19 3.24 6.93 -81.70 -0.57 2.67 16 3 C -0.33 -6.04 9.40 -39.65 -0.37 -6.42 16 4 C 0.47 8.81 8.07 -155.19 -1.25 7.56 16 5 N -0.70 -12.95 10.38 -11.59 -0.12 -13.07 16 6 C 0.50 8.80 7.02 -11.82 -0.08 8.72 16 7 O -0.59 -11.34 12.73 5.28 0.07 -11.27 16 8 C -0.08 -1.14 2.62 -91.50 -0.24 -1.37 16 9 H 0.09 1.23 8.12 -51.92 -0.42 0.80 16 10 C -0.12 -1.33 4.67 -26.52 -0.12 -1.45 16 11 C 0.10 0.94 6.98 -3.92 -0.03 0.91 16 12 N -0.46 -5.42 3.13 -113.74 -0.36 -5.78 16 13 C -0.06 -0.68 11.64 -16.76 -0.20 -0.87 16 14 C -0.03 -0.43 11.87 -17.68 -0.21 -0.64 16 15 N -0.49 -7.74 11.24 -10.61 -0.12 -7.86 16 16 C 0.22 3.14 7.65 -155.22 -1.19 1.96 16 17 C -0.01 -0.20 5.54 -27.50 -0.15 -0.35 16 18 N -0.46 -8.12 7.37 31.32 0.23 -7.89 16 19 H 0.45 6.85 8.96 -182.55 -1.64 5.22 16 20 N -0.34 -6.16 3.63 -58.03 -0.21 -6.37 16 21 C 0.25 5.14 5.71 -5.20 -0.03 5.11 16 22 C -0.56 -12.90 9.39 -34.44 -0.32 -13.23 16 23 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 24 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 25 N -0.89 -21.97 13.29 55.43 0.74 -21.23 16 26 Si 0.91 18.92 29.54 -169.99 -5.02 13.90 16 27 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 28 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 29 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 1.34 7.80 -51.93 -0.40 0.93 16 33 H 0.18 3.42 5.77 -52.49 -0.30 3.12 16 34 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 35 H 0.10 1.08 7.79 -51.93 -0.40 0.68 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 40 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.09 1.29 8.11 -51.93 -0.42 0.87 16 42 H 0.07 1.39 7.88 -51.93 -0.41 0.99 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 LS Contribution 369.15 15.07 5.56 5.56 Total: -1.00 -29.86 369.15 -11.08 -40.94 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.35 Total: 9.84 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -4.50 Total: 3.22 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.16 Total: -62.19 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.86 -11.08 -40.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328989352.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.797 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds