Wall clock time and date at job start Tue Mar 31 2020 05:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35127 * 125.55316 * 2 1 4 4 C 1.40975 * 108.24264 * 180.26050 * 3 2 1 5 5 N 1.33304 * 126.35832 * 179.73485 * 4 3 2 6 6 C 1.32903 * 120.00080 * 0.02562 * 5 4 3 7 7 O 1.21588 * 120.00225 * 359.97438 * 6 5 4 8 8 C 1.50709 * 120.00127 * 180.02562 * 6 5 4 9 9 H 1.09001 * 109.49100 * 299.92748 * 8 6 5 10 10 C 1.53120 * 109.49633 * 179.83478 * 8 6 5 11 11 C 1.53264 * 109.71452 * 170.15225 * 10 8 6 12 12 N 1.46469 * 108.70551 * 50.73688 * 11 10 8 13 13 C 1.34412 * 128.44613 * 162.68902 * 12 11 10 14 14 N 1.30787 * 108.55088 * 180.21792 * 13 12 11 15 15 C 1.34419 * 109.32281 * 359.93582 * 14 13 12 16 16 C 1.33861 * 107.80001 * 359.97438 * 15 14 13 17 17 C 1.50711 * 128.68140 * 180.13110 * 16 15 14 18 18 N 1.37288 * 107.28730 * 359.73791 * 4 3 2 19 19 H 0.96994 * 126.34930 * 180.02562 * 18 4 3 20 20 N 1.36334 * 125.55348 * 179.80182 * 2 1 3 21 21 C 1.46506 * 125.86244 * 0.02562 * 20 2 1 22 22 C 1.50696 * 109.46871 * 84.71403 * 21 20 2 23 23 H 1.07999 * 120.00319 * 0.02562 * 22 21 20 24 24 C 1.37885 * 119.99717 * 180.02562 * 22 21 20 25 25 N 1.31516 * 119.99913 * 180.02562 * 24 22 21 26 26 Si 1.86798 * 119.99766 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47353 * 269.99586 * 26 24 22 28 28 H 1.48501 * 109.47293 * 30.00037 * 26 24 22 29 29 H 1.48504 * 109.46680 * 149.99835 * 26 24 22 30 30 H 1.08990 * 109.47202 * 270.19653 * 1 2 3 31 31 H 1.09003 * 109.46640 * 30.19999 * 1 2 3 32 32 H 1.08998 * 109.47027 * 150.19700 * 1 2 3 33 33 H 1.08001 * 125.87735 * 359.97438 * 3 2 1 34 34 H 1.09008 * 109.42749 * 290.20513 * 10 8 6 35 35 H 1.08997 * 109.43791 * 50.05972 * 10 8 6 36 36 H 1.08996 * 109.56224 * 290.98651 * 11 10 8 37 37 H 1.09008 * 109.75816 * 170.59739 * 11 10 8 38 38 H 1.08000 * 125.72043 * 0.20253 * 13 12 11 39 39 H 1.08003 * 126.09918 * 179.97438 * 15 14 13 40 40 H 1.09000 * 109.74843 * 44.62772 * 17 16 15 41 41 H 1.09004 * 109.78510 * 283.93186 * 17 16 15 42 42 H 1.09005 * 109.46943 * 324.71723 * 21 20 2 43 43 H 1.09002 * 109.47064 * 204.71986 * 21 20 2 44 44 H 0.97001 * 119.99646 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0994 0.0000 4 6 3.6386 0.6799 -0.0061 5 7 4.7125 1.4697 -0.0129 6 6 4.5659 2.7906 -0.0140 7 8 3.4523 3.2788 -0.0092 8 6 5.7800 3.6835 -0.0224 9 1 6.3818 3.4873 0.8650 10 6 5.3365 5.1490 -0.0261 11 6 6.5483 6.0565 0.2123 12 7 7.6102 5.6775 -0.7226 13 6 8.6967 6.3817 -1.0835 14 7 9.3826 5.6762 -1.9450 15 6 8.7584 4.5050 -2.1581 16 6 7.6527 4.4874 -1.4038 17 6 6.6142 3.4023 -1.2797 18 7 3.6380 -0.6930 -0.0037 19 1 4.4190 -1.2682 -0.0063 20 7 2.2997 -1.1092 0.0038 21 6 1.8328 -2.4978 0.0081 22 6 1.5492 -2.9367 -1.4053 23 1 1.7019 -2.2502 -2.2249 24 6 1.0947 -4.2149 -1.6523 25 7 0.8477 -4.5981 -2.8859 26 14 0.8300 -5.4021 -0.2346 27 1 2.0811 -6.1622 0.0148 28 1 0.4614 -4.6411 0.9862 29 1 -0.2631 -6.3469 -0.5778 30 1 -0.3633 0.0035 1.0276 31 1 -0.3633 0.8882 -0.5170 32 1 -0.3633 -0.8917 -0.5108 33 1 1.9488 2.1231 -0.0004 34 1 4.8877 5.3896 -0.9899 35 1 4.6031 5.3081 0.7644 36 1 6.9012 5.9328 1.2361 37 1 6.2683 7.0967 0.0453 38 1 8.9590 7.3653 -0.7227 39 1 9.0898 3.7185 -2.8199 40 1 7.1038 2.4328 -1.1876 41 1 5.9690 3.4069 -2.1582 42 1 0.9216 -2.5729 0.6016 43 1 2.6017 -3.1383 0.4402 44 1 0.5283 -5.4974 -3.0595 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329038461.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:32 Heat of formation + Delta-G solvation = 122.775003 kcal Electronic energy + Delta-G solvation = -27170.367745 eV Core-core repulsion = 23319.298216 eV Total energy + Delta-G solvation = -3851.069529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.31875 -41.13072 -39.00694 -36.21397 -34.45392 -33.21066 -33.04710 -32.42525 -31.09679 -30.45313 -28.25208 -27.68719 -27.10998 -24.67826 -23.52530 -22.54730 -21.54083 -21.25160 -19.84149 -19.33914 -18.76312 -17.52602 -17.21202 -17.03491 -15.98908 -15.85803 -15.26702 -15.16122 -14.70224 -14.59573 -14.15500 -14.00897 -13.95916 -13.67796 -13.14352 -13.11933 -13.08744 -13.05730 -12.92479 -12.63810 -12.35541 -12.09893 -12.00539 -11.75503 -11.49018 -11.09789 -11.04934 -10.97757 -10.76262 -10.11405 -10.00207 -9.62473 -9.53952 -9.37728 -9.11796 -9.02755 -8.48954 -8.31271 -7.08598 -6.58712 -4.67982 1.44791 1.83709 2.06267 2.75122 2.78967 2.90017 2.94453 3.01942 3.16649 3.90361 3.94497 4.13691 4.34919 4.48608 4.61836 4.65340 4.69060 4.84144 4.87457 4.99126 5.19127 5.21050 5.36050 5.41578 5.42937 5.56784 5.69191 5.70229 5.75789 5.87872 5.91971 5.98942 6.03661 6.14073 6.15131 6.18795 6.38347 6.43201 6.58836 6.75663 6.84630 7.19788 7.27598 7.45013 7.73507 7.95096 8.05633 8.17451 8.44410 8.93173 9.21181 10.52622 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023718 B = 0.002331 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.235889 B =12010.146742 C =12720.199506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.195 3.805 3 C -0.330 4.330 4 C 0.474 3.526 5 N -0.698 5.698 6 C 0.500 3.500 7 O -0.585 6.585 8 C -0.082 4.082 9 H 0.091 0.909 10 C -0.117 4.117 11 C 0.104 3.896 12 N -0.456 5.456 13 C 0.174 3.826 14 N -0.499 5.499 15 C -0.031 4.031 16 C -0.012 4.012 17 C -0.027 4.027 18 N -0.464 5.464 19 H 0.446 0.554 20 N -0.336 5.336 21 C 0.227 3.773 22 C -0.565 4.565 23 H 0.086 0.914 24 C 0.085 3.915 25 N -0.873 5.873 26 Si 0.873 3.127 27 H -0.270 1.270 28 H -0.263 1.263 29 H -0.276 1.276 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.185 0.815 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.202 0.798 39 H 0.168 0.832 40 H 0.099 0.901 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 13.460 8.713 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.068 3.932 3 C -0.361 4.361 4 C 0.225 3.775 5 N -0.462 5.462 6 C 0.285 3.715 7 O -0.468 6.468 8 C -0.103 4.103 9 H 0.110 0.890 10 C -0.155 4.155 11 C -0.018 4.018 12 N -0.141 5.141 13 C -0.108 4.108 14 N -0.217 5.217 15 C -0.178 4.178 16 C -0.126 4.126 17 C -0.065 4.065 18 N -0.185 5.185 19 H 0.294 0.706 20 N -0.122 5.122 21 C 0.109 3.891 22 C -0.603 4.603 23 H 0.104 0.896 24 C -0.122 4.122 25 N -0.508 5.508 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.188 1.188 29 H -0.201 1.201 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.202 0.798 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.218 0.782 39 H 0.186 0.814 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.063 0.937 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.765 13.201 8.319 16.635 hybrid contribution -0.921 -1.074 0.915 1.685 sum 4.844 12.127 9.234 15.994 Atomic orbital electron populations 1.20695 0.86212 1.05491 1.03613 1.21387 0.94585 0.85356 0.91862 1.22291 0.91166 1.00326 1.22357 1.19194 0.91744 0.82028 0.84490 1.68709 1.27984 1.05356 1.44169 1.20448 0.88562 0.86468 0.76005 1.90538 1.27137 1.79226 1.49873 1.20925 0.96147 0.93469 0.99808 0.89047 1.21714 0.95806 0.93165 1.04788 1.22057 0.86867 1.00328 0.92538 1.45484 1.19986 1.14625 1.33965 1.24715 0.86522 0.99996 0.99555 1.70461 1.29841 1.05130 1.16309 1.21819 0.94408 0.97382 1.04158 1.21327 1.01092 0.89715 1.00509 1.20071 0.93532 0.95478 0.97438 1.44493 0.98641 1.05362 1.70043 0.70610 1.47450 0.93039 1.07621 1.64112 1.20370 0.95967 0.72376 1.00396 1.21195 1.48472 0.99993 0.90622 0.89633 1.24817 0.93960 0.97512 0.95881 1.69852 1.42384 1.19545 1.19065 0.86923 0.79190 0.81777 0.82301 1.19521 1.18803 1.20117 0.89778 0.89027 0.88802 0.79817 0.90494 0.88687 0.89774 0.89000 0.78187 0.81433 0.88270 0.90120 0.91776 0.93718 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 9.93 36.00 0.36 -0.95 16 2 C 0.19 3.21 6.93 -81.70 -0.57 2.64 16 3 C -0.33 -5.86 9.40 -39.65 -0.37 -6.24 16 4 C 0.47 8.64 8.07 -155.18 -1.25 7.39 16 5 N -0.70 -12.58 10.38 -11.59 -0.12 -12.70 16 6 C 0.50 8.63 7.02 -11.81 -0.08 8.54 16 7 O -0.59 -11.21 12.72 5.29 0.07 -11.14 16 8 C -0.08 -1.09 2.62 -91.45 -0.24 -1.33 16 9 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 10 C -0.12 -1.30 4.66 -26.53 -0.12 -1.42 16 11 C 0.10 0.89 7.00 -3.92 -0.03 0.86 16 12 N -0.46 -5.12 3.13 -114.09 -0.36 -5.48 16 13 C 0.17 1.95 12.66 -90.71 -1.15 0.81 16 14 N -0.50 -7.03 11.27 -14.87 -0.17 -7.20 16 15 C -0.03 -0.42 11.84 -17.96 -0.21 -0.63 16 16 C -0.01 -0.15 6.57 -81.73 -0.54 -0.69 16 17 C -0.03 -0.35 5.51 -27.62 -0.15 -0.50 16 18 N -0.46 -7.81 7.37 31.32 0.23 -7.57 16 19 H 0.45 6.48 8.96 -182.56 -1.64 4.84 16 20 N -0.34 -5.92 3.63 -58.02 -0.21 -6.13 16 21 C 0.23 4.22 4.78 -5.19 -0.02 4.19 16 22 C -0.57 -13.21 9.94 -34.44 -0.34 -13.55 16 23 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 24 C 0.09 2.06 5.47 -17.82 -0.10 1.96 16 25 N -0.87 -23.24 13.96 55.43 0.77 -22.47 16 26 Si 0.87 17.34 27.47 -169.99 -4.67 12.67 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 H -0.26 -4.79 6.54 56.52 0.37 -4.42 16 29 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.32 7.80 -51.93 -0.41 0.91 16 33 H 0.18 3.39 5.77 -52.49 -0.30 3.08 16 34 H 0.08 0.95 8.11 -51.92 -0.42 0.53 16 35 H 0.09 1.05 7.77 -51.93 -0.40 0.65 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.17 1.96 8.06 -52.48 -0.42 1.54 16 40 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.11 8.11 -51.93 -0.42 0.69 16 42 H 0.06 1.11 6.95 -51.93 -0.36 0.75 16 43 H 0.04 0.79 7.57 -51.93 -0.39 0.40 16 44 H 0.27 6.77 8.31 -40.82 -0.34 6.44 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -31.17 365.44 -11.08 -42.26 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -7.32 Total: 11.16 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -4.82 Total: 1.09 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.15 Total: -61.54 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -4.67 Total: 12.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.17 -11.08 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329038461.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.030 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds