Wall clock time and date at job start Tue Mar 31 2020 05:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35124 * 125.55450 * 2 1 4 4 C 1.40979 * 108.23963 * 179.97438 * 3 2 1 5 5 N 1.33309 * 126.35720 * 179.97438 * 4 3 2 6 6 C 1.32910 * 119.99796 * 0.03467 * 5 4 3 7 7 O 1.21598 * 119.99832 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00173 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.50018 * 59.99465 * 8 6 5 10 10 C 1.53113 * 109.50053 * 180.02562 * 8 6 5 11 11 C 1.53271 * 109.70900 * 189.82910 * 10 8 6 12 12 N 1.46471 * 108.71562 * 309.27393 * 11 10 8 13 13 C 1.34408 * 128.44119 * 197.34536 * 12 11 10 14 14 N 1.30787 * 108.55059 * 179.76953 * 13 12 11 15 15 C 1.34420 * 109.32165 * 0.06508 * 14 13 12 16 16 C 1.33863 * 107.79792 * 0.02562 * 15 14 13 17 17 C 1.50712 * 128.68055 * 179.90436 * 16 15 14 18 18 N 1.37281 * 107.28928 * 359.77834 * 4 3 2 19 19 H 0.96998 * 126.35575 * 180.24172 * 18 4 3 20 20 N 1.36338 * 125.54380 * 179.97438 * 2 1 3 21 21 C 1.46491 * 125.86933 * 359.97438 * 20 2 1 22 22 C 1.50702 * 109.46957 * 84.99981 * 21 20 2 23 23 H 1.08002 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.37884 * 119.99942 * 179.72213 * 22 21 20 25 25 N 1.31514 * 119.99698 * 0.28408 * 24 22 21 26 26 Si 1.86794 * 119.99837 * 180.27476 * 24 22 21 27 27 H 1.48501 * 109.47188 * 90.00793 * 26 24 22 28 28 H 1.48501 * 109.47085 * 210.00372 * 26 24 22 29 29 H 1.48498 * 109.47634 * 330.00608 * 26 24 22 30 30 H 1.09001 * 109.47245 * 270.02569 * 1 2 3 31 31 H 1.09003 * 109.46897 * 30.01860 * 1 2 3 32 32 H 1.09002 * 109.47304 * 150.01679 * 1 2 3 33 33 H 1.07996 * 125.87801 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.43077 * 309.92656 * 10 8 6 35 35 H 1.09004 * 109.43526 * 69.78895 * 10 8 6 36 36 H 1.09008 * 109.60431 * 189.49659 * 11 10 8 37 37 H 1.08996 * 109.70229 * 69.11432 * 11 10 8 38 38 H 1.08003 * 125.72332 * 359.76262 * 13 12 11 39 39 H 1.08001 * 126.10172 * 180.02562 * 15 14 13 40 40 H 1.09010 * 109.74293 * 76.05038 * 17 16 15 41 41 H 1.08999 * 109.78669 * 315.35397 * 17 16 15 42 42 H 1.09004 * 109.47166 * 325.00247 * 21 20 2 43 43 H 1.08994 * 109.47507 * 204.99953 * 21 20 2 44 44 H 0.97005 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2927 1.0993 0.0000 4 6 3.6386 0.6797 0.0006 5 7 4.7126 1.4695 0.0003 6 6 4.5661 2.7905 0.0001 7 8 3.4524 3.2786 -0.0004 8 6 5.7801 3.6833 0.0003 9 1 6.3779 3.4848 -0.8892 10 6 5.3367 5.1488 0.0006 11 6 6.5479 6.0553 -0.2455 12 7 7.6134 5.6793 0.6866 13 6 8.7010 6.3850 1.0411 14 7 9.3903 5.6824 1.9024 15 6 8.7672 4.5117 2.1215 16 6 7.6588 4.4915 1.3712 17 6 6.6197 3.4060 1.2550 18 7 3.6380 -0.6931 0.0060 19 1 4.4189 -1.2684 0.0110 20 7 2.2996 -1.1093 0.0005 21 6 1.8326 -2.4978 0.0016 22 6 1.5546 -2.9355 -1.4134 23 1 1.7106 -2.2482 -2.2318 24 6 1.1071 -4.2154 -1.6638 25 7 0.9175 -5.0524 -0.6673 26 14 0.7699 -4.7602 -3.4184 27 1 2.0044 -5.3447 -4.0012 28 1 -0.3096 -5.7801 -3.4213 29 1 0.3467 -3.5893 -4.2278 30 1 -0.3634 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8901 -0.5136 33 1 1.9488 2.1231 0.0004 34 1 4.6003 5.3050 -0.7877 35 1 4.8918 5.3929 0.9653 36 1 6.2664 7.0951 -0.0788 37 1 6.8978 5.9310 -1.2702 38 1 8.9619 7.3674 0.6760 39 1 9.1012 3.7274 2.7846 40 1 5.9783 3.4143 2.1363 41 1 7.1083 2.4358 1.1643 42 1 0.9191 -2.5735 0.5915 43 1 2.5997 -3.1388 0.4361 44 1 0.6023 -5.9528 -0.8435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329038462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:36 Heat of formation + Delta-G solvation = 116.034095 kcal Electronic energy + Delta-G solvation = -27116.195776 eV Core-core repulsion = 23264.833939 eV Total energy + Delta-G solvation = -3851.361837 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.32477 -41.04851 -38.96037 -36.19334 -34.41131 -33.23706 -33.05401 -32.34917 -30.76830 -30.45231 -28.16020 -27.61813 -26.77136 -24.68097 -23.65588 -22.76806 -21.53511 -21.21302 -19.78862 -19.32416 -18.74685 -17.22191 -17.19129 -16.86567 -15.95139 -15.81479 -15.20775 -15.11396 -14.73903 -14.54083 -14.16744 -14.00181 -13.95810 -13.67923 -13.15793 -13.10508 -13.02581 -12.88648 -12.83345 -12.45210 -12.17110 -11.99181 -11.91767 -11.71594 -11.35677 -11.12433 -11.04138 -10.96322 -10.58080 -10.43047 -10.00679 -9.54587 -9.53418 -9.33418 -8.98959 -8.96258 -8.44072 -8.32003 -7.07634 -6.57484 -4.73057 1.52821 1.94413 2.05685 2.74949 2.84208 3.00513 3.09096 3.12413 3.15576 3.97154 4.05987 4.16866 4.38945 4.50839 4.62243 4.65208 4.74449 4.87943 4.92854 5.00443 5.20728 5.22289 5.37713 5.42161 5.48262 5.67543 5.72031 5.75021 5.77273 5.87873 6.03386 6.03811 6.15545 6.19272 6.38443 6.40901 6.45412 6.51201 6.67696 6.74656 7.19183 7.30108 7.38977 7.43984 7.54779 7.87442 8.04730 8.22455 8.36103 8.97871 9.26281 10.45640 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.025045 B = 0.002227 C = 0.002173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.703769 B =12568.999414 C =12882.029720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.470 3.530 5 N -0.700 5.700 6 C 0.499 3.501 7 O -0.587 6.587 8 C -0.082 4.082 9 H 0.091 0.909 10 C -0.116 4.116 11 C 0.104 3.896 12 N -0.456 5.456 13 C 0.174 3.826 14 N -0.499 5.499 15 C -0.031 4.031 16 C -0.012 4.012 17 C -0.026 4.026 18 N -0.464 5.464 19 H 0.446 0.554 20 N -0.336 5.336 21 C 0.253 3.747 22 C -0.558 4.558 23 H 0.069 0.931 24 C 0.071 3.929 25 N -0.885 5.885 26 Si 0.909 3.091 27 H -0.276 1.276 28 H -0.281 1.281 29 H -0.270 1.270 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.202 0.798 39 H 0.168 0.832 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 14.127 1.708 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.464 5.464 6 C 0.284 3.716 7 O -0.470 6.470 8 C -0.104 4.104 9 H 0.109 0.891 10 C -0.154 4.154 11 C -0.018 4.018 12 N -0.140 5.140 13 C -0.108 4.108 14 N -0.218 5.218 15 C -0.178 4.178 16 C -0.127 4.127 17 C -0.064 4.064 18 N -0.186 5.186 19 H 0.293 0.707 20 N -0.122 5.122 21 C 0.136 3.864 22 C -0.596 4.596 23 H 0.087 0.913 24 C -0.134 4.134 25 N -0.521 5.521 26 Si 0.735 3.265 27 H -0.202 1.202 28 H -0.206 1.206 29 H -0.194 1.194 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.103 0.897 38 H 0.218 0.782 39 H 0.185 0.815 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.499 13.824 2.029 15.016 hybrid contribution -0.936 -0.737 -1.392 1.832 sum 4.563 13.088 0.637 13.875 Atomic orbital electron populations 1.20666 0.86312 1.05131 1.03706 1.21396 0.94593 0.85575 0.92103 1.22260 0.91187 1.00287 1.22732 1.19201 0.91727 0.82090 0.84761 1.68705 1.28011 1.05318 1.44416 1.20425 0.88508 0.86507 0.76133 1.90538 1.27120 1.79240 1.50100 1.20923 0.96201 0.93483 0.99795 0.89053 1.21712 0.95800 0.93200 1.04723 1.22068 0.86773 1.00365 0.92628 1.45485 1.19853 1.14698 1.33962 1.24716 0.86443 0.99999 0.99619 1.70459 1.29844 1.05212 1.16253 1.21809 0.94380 0.97398 1.04257 1.21331 1.01064 0.89798 1.00462 1.20064 0.93452 0.95463 0.97449 1.44564 0.98954 1.05318 1.69727 0.70683 1.47993 0.92761 1.08335 1.63121 1.20079 0.96560 0.70054 0.99659 1.21358 1.48031 0.98680 0.91532 0.91259 1.24951 0.94197 0.95772 0.98502 1.69895 1.43892 1.06900 1.31446 0.86296 0.78406 0.78755 0.82997 1.20162 1.20618 1.19414 0.89749 0.89284 0.88928 0.79976 0.88664 0.90548 0.89023 0.89711 0.78183 0.81470 0.90224 0.88298 0.91351 0.93016 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.32 9.92 36.01 0.36 -0.97 16 2 C 0.19 3.23 6.93 -81.70 -0.57 2.66 16 3 C -0.33 -6.04 9.40 -39.65 -0.37 -6.41 16 4 C 0.47 8.74 8.07 -155.19 -1.25 7.49 16 5 N -0.70 -12.83 10.38 -11.59 -0.12 -12.95 16 6 C 0.50 8.74 7.02 -11.81 -0.08 8.66 16 7 O -0.59 -11.41 12.72 5.28 0.07 -11.34 16 8 C -0.08 -1.11 2.62 -91.46 -0.24 -1.35 16 9 H 0.09 1.21 8.12 -51.93 -0.42 0.79 16 10 C -0.12 -1.31 4.66 -26.53 -0.12 -1.43 16 11 C 0.10 0.90 7.00 -3.92 -0.03 0.87 16 12 N -0.46 -5.11 3.13 -114.09 -0.36 -5.46 16 13 C 0.17 1.95 12.66 -90.71 -1.15 0.80 16 14 N -0.50 -6.96 11.27 -14.87 -0.17 -7.13 16 15 C -0.03 -0.42 11.84 -17.96 -0.21 -0.63 16 16 C -0.01 -0.15 6.57 -81.73 -0.54 -0.69 16 17 C -0.03 -0.33 5.51 -27.62 -0.15 -0.48 16 18 N -0.46 -8.04 7.37 31.32 0.23 -7.81 16 19 H 0.45 6.75 8.96 -182.55 -1.64 5.11 16 20 N -0.34 -6.12 3.63 -58.03 -0.21 -6.33 16 21 C 0.25 5.11 5.71 -5.20 -0.03 5.08 16 22 C -0.56 -12.81 9.39 -34.44 -0.32 -13.13 16 23 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16 24 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 25 N -0.88 -21.83 13.29 55.43 0.74 -21.09 16 26 Si 0.91 18.73 29.54 -169.99 -5.02 13.71 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 29 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.33 7.80 -51.93 -0.40 0.92 16 33 H 0.18 3.42 5.77 -52.49 -0.30 3.12 16 34 H 0.09 1.09 7.77 -51.93 -0.40 0.68 16 35 H 0.08 0.94 8.11 -51.93 -0.42 0.51 16 36 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.20 1.43 8.06 -52.48 -0.42 1.01 16 39 H 0.17 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.08 1.05 8.11 -51.92 -0.42 0.63 16 41 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.39 7.88 -51.93 -0.41 0.98 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.27 6.41 8.31 -40.82 -0.34 6.08 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -29.65 369.03 -11.44 -41.08 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.35 Total: 9.71 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -4.81 Total: 2.05 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: 0.11 Total: -60.77 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.65 -11.44 -41.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329038462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.118 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds