Wall clock time and date at job start Tue Mar 31 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00163 * 2 1 4 4 H 1.48506 * 109.47352 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47354 * 299.99796 * 3 2 1 6 6 H 1.48504 * 109.47178 * 60.00243 * 3 2 1 7 7 C 1.38814 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00376 * 163.06365 * 7 2 1 9 9 N 1.36945 * 119.99706 * 343.06023 * 7 2 1 10 10 C 1.46924 * 120.62993 * 331.84227 * 9 7 2 11 11 C 1.53195 * 108.77488 * 233.62759 * 10 9 7 12 12 C 1.53042 * 109.31095 * 305.36671 * 11 10 9 13 13 C 1.53002 * 109.45605 * 181.38703 * 12 11 10 14 14 N 1.46501 * 109.46796 * 174.97767 * 13 12 11 15 15 C 1.34777 * 119.99579 * 180.02562 * 14 13 12 16 16 O 1.21696 * 120.00289 * 359.97438 * 15 14 13 17 17 C 1.46680 * 119.99656 * 179.97438 * 15 14 13 18 18 C 1.40327 * 126.56273 * 359.96557 * 17 15 14 19 19 N 1.31000 * 108.78135 * 180.02562 * 18 17 15 20 20 N 1.39898 * 109.55815 * 0.02562 * 19 18 17 21 21 N 1.40018 * 132.51719 * 180.02562 * 20 19 18 22 22 C 1.30837 * 120.65765 * 179.97438 * 21 20 19 23 23 C 1.39733 * 120.97541 * 0.26330 * 22 21 20 24 24 C 1.36563 * 119.93752 * 359.49696 * 23 22 21 25 25 C 1.36764 * 107.87355 * 0.02562 * 20 19 18 26 26 C 1.53036 * 109.52761 * 61.37223 * 12 11 10 27 27 C 1.46923 * 120.63142 * 151.86155 * 9 7 2 28 28 H 0.97005 * 120.00028 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.58685 * 113.84021 * 10 9 7 30 30 H 1.08997 * 109.70615 * 353.49116 * 10 9 7 31 31 H 1.08999 * 109.49283 * 185.41735 * 11 10 9 32 32 H 1.08994 * 109.49533 * 65.31661 * 11 10 9 33 33 H 1.09001 * 109.45842 * 301.35489 * 12 11 10 34 34 H 1.08991 * 109.47571 * 54.97428 * 13 12 11 35 35 H 1.09001 * 109.46796 * 294.97146 * 13 12 11 36 36 H 0.96999 * 120.00411 * 359.97438 * 14 13 12 37 37 H 1.08009 * 125.60778 * 0.02562 * 18 17 15 38 38 H 1.08000 * 119.51008 * 179.97438 * 22 21 20 39 39 H 1.07999 * 120.03150 * 179.73754 * 23 22 21 40 40 H 1.08000 * 120.43854 * 180.27189 * 24 23 22 41 41 H 1.09002 * 109.49589 * 58.57442 * 26 12 11 42 42 H 1.09002 * 109.49833 * 178.67247 * 26 12 11 43 43 H 1.08998 * 109.58750 * 246.16204 * 27 9 7 44 44 H 1.09004 * 109.58442 * 6.44241 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2730 9 7 1.3700 -2.3625 0.3445 10 6 0.2263 -2.3408 1.2665 11 6 0.4983 -3.3200 2.4128 12 6 0.8133 -4.7014 1.8343 13 6 1.0516 -5.6903 2.9773 14 7 1.2344 -7.0362 2.4284 15 6 1.4594 -8.0763 3.2554 16 8 1.5110 -7.8975 4.4580 17 6 1.6419 -9.4240 2.7058 18 6 1.6090 -9.7855 1.3503 19 7 1.8122 -11.0760 1.2530 20 7 1.9865 -11.6203 2.5299 21 7 2.2291 -12.9247 2.9775 22 6 2.3566 -13.1789 4.2545 23 6 2.2492 -12.1601 5.2048 24 6 2.0179 -10.8754 4.8035 25 6 1.8815 -10.6029 3.4378 26 6 2.0685 -4.6171 0.9630 27 6 1.8141 -3.6529 -0.1999 28 1 -0.4850 0.8401 0.0004 29 1 -0.6769 -2.6416 0.7355 30 1 0.0965 -1.3356 1.6675 31 1 -0.3821 -3.3853 3.0520 32 1 1.3480 -2.9682 2.9978 33 1 -0.0269 -5.0418 1.2290 34 1 0.1922 -5.6849 3.6476 35 1 1.9450 -5.3987 3.5296 36 1 1.1929 -7.1788 1.4698 37 1 1.4433 -9.1108 0.5234 38 1 2.5431 -14.1919 4.5793 39 1 2.3529 -12.3878 6.2554 40 1 1.9378 -10.0810 5.5308 41 1 2.9033 -4.2529 1.5618 42 1 2.3059 -5.6058 0.5703 43 1 1.0405 -4.0607 -0.8505 44 1 2.7333 -3.5126 -0.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333204620.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:27 Heat of formation + Delta-G solvation = 119.929500 kcal Electronic energy + Delta-G solvation = -27039.100417 eV Core-core repulsion = 23187.907497 eV Total energy + Delta-G solvation = -3851.192920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -42.26305 -39.56062 -38.29506 -37.71592 -34.96902 -33.65145 -32.92189 -31.63717 -30.89382 -30.01987 -29.55545 -26.86131 -25.23346 -24.47242 -23.44132 -22.76960 -22.13311 -21.03955 -20.33008 -19.14304 -18.54657 -17.86422 -17.12584 -16.70601 -16.34751 -16.31063 -15.61716 -15.11654 -14.81938 -14.61200 -14.04942 -13.94350 -13.87527 -13.56851 -13.45171 -13.17121 -13.06955 -12.94182 -12.34908 -12.31899 -11.88971 -11.85763 -11.34384 -11.28217 -10.99067 -10.91713 -10.73312 -10.49706 -10.24718 -10.19501 -10.14565 -10.06305 -9.87844 -9.54883 -9.43633 -9.06068 -8.53400 -8.46797 -6.66294 -5.78634 -3.20934 -0.24707 0.51597 0.93569 1.74975 2.51607 3.16974 3.31019 3.37357 3.45504 3.47609 3.71893 3.88469 4.05352 4.07890 4.41772 4.50167 4.66227 4.77279 4.95091 5.13439 5.23701 5.35099 5.38134 5.41544 5.45149 5.57724 5.61444 5.79268 5.87173 5.95095 6.05710 6.14983 6.32678 6.42608 6.47247 6.60705 6.69416 6.76954 6.81919 6.84182 6.94296 6.98729 7.37218 7.51844 7.66631 7.80518 8.20157 8.45903 9.22171 9.85733 10.42254 11.29862 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034519 B = 0.002076 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.944174 B =13484.529790 C =13844.414612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.091 4.091 13 C 0.126 3.874 14 N -0.718 5.718 15 C 0.594 3.406 16 O -0.553 6.553 17 C -0.266 4.266 18 C 0.097 3.903 19 N -0.252 5.252 20 N -0.174 5.174 21 N -0.216 5.216 22 C 0.118 3.882 23 C -0.160 4.160 24 C -0.024 4.024 25 C 0.105 3.895 26 C -0.127 4.127 27 C 0.145 3.855 28 H 0.253 0.747 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.209 0.791 38 H 0.208 0.792 39 H 0.161 0.839 40 H 0.172 0.828 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -25.117 10.025 27.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.172 4.172 12 C -0.110 4.110 13 C 0.003 3.997 14 N -0.368 5.368 15 C 0.381 3.619 16 O -0.432 6.432 17 C -0.282 4.282 18 C -0.084 4.084 19 N -0.076 5.076 20 N -0.040 5.040 21 N -0.029 5.029 22 C -0.075 4.075 23 C -0.185 4.185 24 C -0.052 4.052 25 C -0.021 4.021 26 C -0.167 4.167 27 C 0.018 3.982 28 H 0.063 0.937 29 H 0.036 0.964 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.234 0.766 37 H 0.226 0.774 38 H 0.224 0.776 39 H 0.179 0.821 40 H 0.189 0.811 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.773 -26.307 9.038 27.954 hybrid contribution 0.259 1.886 0.749 2.046 sum 3.032 -24.421 9.787 26.483 Atomic orbital electron populations 1.70037 1.05248 1.25364 1.54103 1.25042 0.95293 0.98417 1.00995 0.86244 0.79386 0.84016 0.77258 1.20278 1.21769 1.21565 1.19224 0.92548 0.84830 1.41426 0.91718 1.44057 1.35908 1.01535 1.50048 1.20761 0.88607 0.98164 0.87914 1.22176 1.00366 0.94626 1.00080 1.21322 0.98797 0.95394 0.95442 1.21597 1.01629 0.79772 0.96714 1.45826 1.72863 1.07937 1.10173 1.16847 0.76301 0.82732 0.85989 1.90759 1.52523 1.85331 1.14602 1.19891 1.22117 0.93636 0.92602 1.24363 0.94944 0.92340 0.96761 1.77730 1.26219 1.09791 0.93887 1.50972 1.44737 1.03031 1.05257 1.75892 1.15723 0.94024 1.17221 1.24333 0.93108 1.02110 0.87909 1.21766 1.01956 0.92383 1.02411 1.21227 0.92314 0.98515 0.93114 1.19771 1.00627 0.89792 0.91910 1.22078 0.97021 0.98720 0.98841 1.20893 0.97534 0.87024 0.92710 0.93705 0.96449 0.89428 0.93045 0.92379 0.91233 0.91645 0.91462 0.76603 0.77435 0.77577 0.82134 0.81093 0.92141 0.93445 0.96577 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.19 55.49 0.62 -25.36 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.80 9.58 -15.05 -0.14 -6.94 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.46 2.99 -172.32 -0.52 -14.98 16 10 C 0.17 3.95 5.30 -3.71 -0.02 3.93 16 11 C -0.13 -2.39 5.36 -26.61 -0.14 -2.53 16 12 C -0.09 -1.37 2.19 -90.58 -0.20 -1.56 16 13 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 14 N -0.72 -8.47 5.26 -61.62 -0.32 -8.79 16 15 C 0.59 7.83 7.79 -12.85 -0.10 7.73 16 16 O -0.55 -8.77 15.77 5.19 0.08 -8.69 16 17 C -0.27 -3.13 6.16 -104.73 -0.65 -3.78 16 18 C 0.10 1.00 11.44 -17.12 -0.20 0.80 16 19 N -0.25 -3.16 12.61 30.75 0.39 -2.78 16 20 N -0.17 -2.11 5.25 32.44 0.17 -1.94 16 21 N -0.22 -2.13 11.96 30.60 0.37 -1.77 16 22 C 0.12 0.60 11.28 -17.42 -0.20 0.40 16 23 C -0.16 -0.77 10.04 -39.63 -0.40 -1.17 16 24 C -0.02 -0.20 9.75 -39.55 -0.39 -0.59 16 25 C 0.11 1.21 6.83 -84.06 -0.57 0.63 16 26 C -0.13 -2.01 5.25 -26.61 -0.14 -2.15 16 27 C 0.14 2.89 6.52 -3.71 -0.02 2.86 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 2.29 6.06 -51.93 -0.31 1.98 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 3.78 6.57 -40.82 -0.27 3.51 16 37 H 0.21 1.31 7.46 -52.48 -0.39 0.92 16 38 H 0.21 0.03 8.06 -52.49 -0.42 -0.40 16 39 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 40 H 0.17 1.41 7.18 -52.49 -0.38 1.03 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.61 7.15 -51.93 -0.37 0.24 16 43 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 363.21 15.07 5.47 5.47 Total: -1.00 -35.45 363.21 -7.95 -43.40 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -5.91 Total: -0.39 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -3.27 Total: -0.74 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.71 Total: -55.61 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.08 Total: -8.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.45 -7.95 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333204620.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.330 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds