Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46505 * 119.99770 * 2 1 4 4 C 1.34776 * 119.99851 * 180.02562 * 2 1 3 5 5 O 1.21587 * 120.00116 * 12.60834 * 4 2 1 6 6 N 1.34776 * 119.99675 * 192.60071 * 4 2 1 7 7 C 1.46966 * 120.59224 * 18.53604 * 6 4 2 8 8 C 1.53366 * 108.63765 * 124.74983 * 7 6 4 9 9 N 1.46968 * 108.63607 * 49.41911 * 8 7 6 10 10 C 1.34776 * 120.59455 * 124.79948 * 9 8 7 11 11 O 1.21277 * 119.99869 * 174.25774 * 10 9 8 12 12 C 1.50699 * 119.99805 * 354.25804 * 10 9 8 13 13 S 1.81004 * 109.46773 * 179.97438 * 12 10 9 14 14 C 1.76205 * 99.99830 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99988 * 0.02562 * 14 13 12 16 16 C 1.38802 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99908 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99697 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47004 * 90.00044 * 18 16 14 20 20 H 1.48502 * 109.47197 * 210.00154 * 18 16 14 21 21 H 1.48503 * 109.47173 * 330.00483 * 18 16 14 22 22 C 1.46971 * 118.81291 * 304.77407 * 9 8 7 23 23 C 1.52995 * 109.61010 * 174.96987 * 22 9 8 24 24 C 1.52995 * 109.61067 * 295.31526 * 22 9 8 25 25 C 1.46962 * 120.59598 * 198.24857 * 6 4 2 26 26 H 1.08998 * 109.46762 * 89.99717 * 1 2 3 27 27 H 1.08991 * 109.47127 * 329.99980 * 1 2 3 28 28 H 1.08994 * 109.46757 * 209.99949 * 1 2 3 29 29 H 1.08999 * 109.46724 * 84.78475 * 3 2 1 30 30 H 1.08994 * 109.46737 * 204.78871 * 3 2 1 31 31 H 1.08997 * 109.47003 * 324.78454 * 3 2 1 32 32 H 1.09006 * 109.60469 * 244.48794 * 7 6 4 33 33 H 1.08993 * 109.61435 * 4.99909 * 7 6 4 34 34 H 1.08997 * 109.61489 * 169.16579 * 8 7 6 35 35 H 1.09004 * 109.60716 * 289.67687 * 8 7 6 36 36 H 1.08997 * 109.46813 * 299.99608 * 12 10 9 37 37 H 1.09002 * 109.47119 * 60.00334 * 12 10 9 38 38 H 0.97000 * 119.99919 * 179.97438 * 17 16 14 39 39 H 1.09004 * 109.47031 * 65.73292 * 23 22 9 40 40 H 1.08998 * 109.47255 * 185.73584 * 23 22 9 41 41 H 1.09005 * 109.47376 * 305.73476 * 23 22 9 42 42 H 1.08998 * 109.47787 * 59.99480 * 24 22 9 43 43 H 1.09001 * 109.47453 * 179.97438 * 24 22 9 44 44 H 1.09001 * 109.47097 * 299.99196 * 24 22 9 45 45 H 1.09009 * 109.60836 * 355.00197 * 25 6 4 46 46 H 1.09001 * 109.61181 * 115.50431 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5530 -2.2074 -0.2308 6 7 3.4623 -1.1813 0.2541 7 6 4.1082 -0.0410 0.9192 8 6 4.8434 -0.5521 2.1644 9 7 5.6663 -1.7083 1.7825 10 6 6.9895 -1.7229 2.0380 11 8 7.6394 -2.7220 1.8139 12 6 7.6615 -0.4976 2.6022 13 16 9.4257 -0.8297 2.8335 14 6 9.9468 0.7234 3.4825 15 1 9.2295 1.5187 3.6212 16 6 11.2790 0.9241 3.8165 17 7 12.1531 -0.0455 3.6480 18 14 11.8313 2.5703 4.5053 19 1 11.7210 2.5495 5.9861 20 1 13.2427 2.8208 4.1175 21 1 10.9691 3.6495 3.9599 22 6 5.0203 -2.8487 1.1175 23 6 6.0814 -3.8705 0.7041 24 6 4.0223 -3.5034 2.0747 25 6 4.2842 -2.3399 -0.1227 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3633 0.8899 0.5138 28 1 -0.3632 -0.8900 0.5138 29 1 2.2983 1.6301 1.0234 30 1 3.1871 1.1170 -0.4309 31 1 1.6521 2.0032 -0.5926 32 1 4.8215 0.4235 0.2383 33 1 3.3524 0.6869 1.2137 34 1 5.4825 0.2366 2.5615 35 1 4.1176 -0.8532 2.9199 36 1 7.5358 0.3361 1.9115 37 1 7.2107 -0.2455 3.5621 38 1 13.0841 0.0950 3.8811 39 1 6.5428 -4.2959 1.5954 40 1 5.6138 -4.6649 0.1226 41 1 6.8438 -3.3785 0.1000 42 1 3.2641 -2.7753 2.3629 43 1 3.5443 -4.3484 1.5791 44 1 4.5472 -3.8527 2.9638 45 1 3.6444 -3.1298 -0.5163 46 1 5.0102 -2.0428 -0.8795 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336366722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = 2.779664 kcal Electronic energy + Delta-G solvation = -27448.891632 eV Core-core repulsion = 23695.769914 eV Total energy + Delta-G solvation = -3753.121717 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27991 -39.81735 -37.19617 -36.17671 -34.30837 -33.78067 -32.45934 -29.72683 -28.78745 -28.31200 -27.37668 -26.91167 -25.50749 -25.16429 -23.02323 -21.25213 -20.28183 -18.55949 -17.78412 -17.11556 -16.89360 -16.54041 -16.23760 -15.81812 -15.55310 -14.83624 -14.80994 -14.52059 -14.38224 -14.17678 -13.86718 -13.56066 -13.39664 -13.26725 -13.07228 -12.78823 -12.58884 -12.39906 -12.27957 -12.01104 -11.96826 -11.67415 -11.55951 -11.37401 -11.16650 -11.08755 -11.04505 -10.94867 -10.78408 -10.30489 -9.82922 -9.36313 -9.09553 -8.94374 -8.69541 -8.25408 -8.23702 -6.52895 -6.24589 -3.95177 2.23225 2.78404 2.86717 3.03893 3.19598 3.21997 3.27265 3.40824 3.54843 4.17241 4.38757 4.54887 4.58373 4.77617 4.82656 4.88900 4.89829 5.03333 5.04866 5.10717 5.12229 5.19237 5.26930 5.32519 5.39948 5.47216 5.52833 5.60207 5.64871 5.68036 5.81712 5.82282 5.93160 5.98369 6.06394 6.07838 6.26179 6.31068 6.49250 6.61232 6.82561 7.50714 7.56022 7.59321 8.25050 8.31799 8.57033 9.20738 10.82776 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018438 B = 0.003100 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.214506 B = 9031.102019 C =10246.317451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.641 5.641 3 C 0.070 3.930 4 C 0.712 3.288 5 O -0.583 6.583 6 N -0.627 5.627 7 C 0.064 3.936 8 C 0.093 3.907 9 N -0.613 5.613 10 C 0.535 3.465 11 O -0.505 6.505 12 C -0.152 4.152 13 S -0.059 6.059 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.918 3.082 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 C 0.159 3.841 23 C -0.131 4.131 24 C -0.147 4.147 25 C 0.127 3.873 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.268 0.732 39 H 0.085 0.915 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.528 2.795 -6.495 23.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.380 5.380 3 C -0.072 4.072 4 C 0.415 3.585 5 O -0.460 6.460 6 N -0.364 5.364 7 C -0.059 4.059 8 C -0.031 4.031 9 N -0.349 5.349 10 C 0.323 3.677 11 O -0.379 6.379 12 C -0.303 4.303 13 S 0.167 5.833 14 C -0.684 4.684 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.744 3.256 19 H -0.203 1.203 20 H -0.208 1.208 21 H -0.197 1.197 22 C 0.073 3.927 23 C -0.188 4.188 24 C -0.206 4.206 25 C 0.003 3.997 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.699 0.676 -6.954 22.796 hybrid contribution -0.383 2.555 0.814 2.709 sum -22.082 3.231 -6.141 23.147 Atomic orbital electron populations 1.21482 0.77705 1.02729 1.01750 1.46927 1.07034 1.04936 1.79069 1.22320 0.98210 0.85607 1.01064 1.15853 0.81173 0.83614 0.77887 1.90904 1.67309 1.31316 1.56443 1.47088 1.06368 1.19728 1.63207 1.23179 0.98481 0.89561 0.94630 1.22139 0.95143 0.89444 0.96415 1.48156 1.07481 1.18048 1.61249 1.20305 0.80716 0.89475 0.77200 1.90744 1.63839 1.32975 1.50354 1.23605 1.05410 0.98271 1.03005 1.85409 0.93726 1.20468 1.83669 1.22847 0.96743 0.99251 1.49521 0.91004 1.24988 0.95536 0.97797 0.95241 1.70012 1.03204 1.31883 1.45125 0.86180 0.77997 0.82213 0.79171 1.20280 1.20760 1.19702 1.20904 0.93453 0.86604 0.91703 1.22211 0.96534 0.96756 1.03324 1.22053 0.98474 1.00517 0.99509 1.21926 0.93568 0.88140 0.96047 0.92934 0.91365 0.90802 0.91863 0.89835 0.91313 0.90676 0.86416 0.88090 0.91177 0.89441 0.89491 0.92167 0.89668 0.93882 0.91060 0.92745 0.91527 0.92213 0.88137 0.91196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.74 10.38 59.85 0.62 1.36 16 2 N -0.64 -5.52 3.25 -197.94 -0.64 -6.17 16 3 C 0.07 0.37 8.56 59.85 0.51 0.88 16 4 C 0.71 8.45 7.90 -86.92 -0.69 7.76 16 5 O -0.58 -8.98 15.64 5.29 0.08 -8.90 16 6 N -0.63 -6.72 2.53 -178.49 -0.45 -7.17 16 7 C 0.06 0.54 4.58 -3.60 -0.02 0.53 16 8 C 0.09 0.96 6.09 -3.60 -0.02 0.94 16 9 N -0.61 -8.41 2.67 -157.96 -0.42 -8.83 16 10 C 0.53 9.58 7.54 -10.99 -0.08 9.50 16 11 O -0.51 -10.64 11.38 5.56 0.06 -10.57 16 12 C -0.15 -2.92 4.51 36.01 0.16 -2.76 16 13 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 14 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 15 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 16 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -25.74 13.22 55.49 0.73 -25.00 16 18 Si 0.92 20.93 29.55 -169.99 -5.02 15.91 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C 0.16 2.05 1.04 -131.60 -0.14 1.92 16 23 C -0.13 -1.87 6.88 37.16 0.26 -1.61 16 24 C -0.15 -1.81 8.42 37.16 0.31 -1.50 16 25 C 0.13 1.50 5.25 -3.83 -0.02 1.48 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 28 H 0.07 0.61 7.63 -51.93 -0.40 0.22 16 29 H 0.06 0.24 6.64 -51.93 -0.34 -0.11 16 30 H 0.08 0.47 5.38 -51.93 -0.28 0.19 16 31 H 0.07 0.26 8.11 -51.93 -0.42 -0.16 16 32 H 0.08 0.61 7.70 -51.93 -0.40 0.21 16 33 H 0.12 0.71 3.54 -55.12 -0.19 0.52 16 34 H 0.10 0.98 5.91 -51.93 -0.31 0.67 16 35 H 0.07 0.69 7.40 -51.93 -0.38 0.31 16 36 H 0.09 1.54 7.95 -51.92 -0.41 1.12 16 37 H 0.09 1.55 7.68 -51.91 -0.40 1.15 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.08 1.41 6.64 -51.93 -0.34 1.06 16 40 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.15 6.85 -51.93 -0.36 0.79 16 42 H 0.05 0.68 7.04 -51.93 -0.37 0.31 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.25 7.06 -51.92 -0.37 0.88 16 46 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -35.39 366.65 -8.29 -43.68 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.05 Total: -0.63 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 1.10 Total: 5.93 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.78 Total: -47.17 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.15 Total: -19.47 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.39 -8.29 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336366722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.464 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds