Wall clock time and date at job start Tue Mar 31 2020 05:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47358 * 269.99964 * 3 2 1 5 5 H 1.48498 * 109.47273 * 30.00689 * 3 2 1 6 6 H 1.48505 * 109.46671 * 150.00078 * 3 2 1 7 7 C 1.38802 * 119.99688 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00332 * 0.02562 * 7 2 1 9 9 S 1.76196 * 119.99637 * 179.97438 * 7 2 1 10 10 C 1.81003 * 99.99843 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46851 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00042 * 359.72049 * 11 10 9 13 13 N 1.34777 * 119.99766 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00266 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47425 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46965 * 180.02562 * 15 14 13 17 17 N 1.46905 * 109.46980 * 180.02562 * 16 15 14 18 18 C 1.46838 * 111.00092 * 66.04120 * 17 16 15 19 19 C 1.53043 * 109.52431 * 185.84077 * 18 17 16 20 20 C 1.53120 * 109.27576 * 300.82133 * 19 18 17 21 21 C 1.53118 * 109.16118 * 57.65246 * 20 19 18 22 22 H 1.09006 * 109.50411 * 62.28897 * 21 20 19 23 23 C 1.50701 * 109.50301 * 182.36225 * 21 20 19 24 24 N 1.34778 * 120.00085 * 300.00141 * 23 21 20 25 25 O 1.21283 * 119.99918 * 120.00229 * 23 21 20 26 26 C 1.46851 * 110.99706 * 190.25243 * 17 16 15 27 27 H 0.97002 * 120.00245 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47363 * 60.00062 * 10 9 7 29 29 H 1.09001 * 109.47208 * 299.99509 * 10 9 7 30 30 H 0.96999 * 120.00043 * 0.02562 * 13 11 10 31 31 H 1.09004 * 109.47212 * 300.00463 * 14 13 11 32 32 H 1.09000 * 109.46684 * 60.00307 * 14 13 11 33 33 H 1.09000 * 109.46497 * 300.00014 * 15 14 13 34 34 H 1.08987 * 109.47025 * 60.00130 * 15 14 13 35 35 H 1.09004 * 109.46976 * 299.99579 * 16 15 14 36 36 H 1.09004 * 109.47878 * 59.99710 * 16 15 14 37 37 H 1.08996 * 109.46632 * 305.85488 * 18 17 16 38 38 H 1.09005 * 109.46601 * 65.83733 * 18 17 16 39 39 H 1.09000 * 109.50149 * 60.76282 * 19 18 17 40 40 H 1.08997 * 109.50701 * 180.84056 * 19 18 17 41 41 H 1.08997 * 109.51940 * 177.55695 * 20 19 18 42 42 H 1.08992 * 109.52523 * 297.74607 * 20 19 18 43 43 H 0.96996 * 119.99791 * 359.97438 * 24 23 21 44 44 H 0.97000 * 119.99774 * 180.02562 * 24 23 21 45 45 H 1.08996 * 109.46533 * 294.17276 * 26 17 16 46 46 H 1.09000 * 109.46336 * 54.14728 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 16 3.7722 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5730 -3.2326 -0.0026 12 8 6.3439 -2.2964 -0.0070 13 7 6.0457 -4.4948 -0.0030 14 6 7.4906 -4.7359 -0.0037 15 6 7.7563 -6.2427 -0.0047 16 6 9.2654 -6.4944 -0.0048 17 7 9.5205 -7.9411 -0.0063 18 6 9.0639 -8.5547 -1.2598 19 6 9.2109 -10.0753 -1.1683 20 6 10.6789 -10.4266 -0.9114 21 6 11.1435 -9.7361 0.3739 22 1 10.5610 -10.1070 1.2173 23 6 12.6037 -10.0296 0.6032 24 7 13.0203 -11.3031 0.7494 25 8 13.4041 -9.1199 0.6561 26 6 10.9405 -8.2253 0.2376 27 1 -0.4850 0.8400 0.0004 28 1 3.6433 -3.4311 -0.8926 29 1 3.6440 -3.4323 0.8874 30 1 5.4290 -5.2435 -0.0036 31 1 7.9332 -4.2887 -0.8938 32 1 7.9339 -4.2890 0.8862 33 1 7.3137 -6.6901 0.8852 34 1 7.3131 -6.6891 -0.8947 35 1 9.7084 -6.0468 -0.8945 36 1 9.7084 -6.0479 0.8855 37 1 8.0174 -8.3006 -1.4285 38 1 9.6664 -8.1809 -2.0878 39 1 8.5979 -10.4515 -0.3492 40 1 8.8859 -10.5293 -2.1043 41 1 10.7813 -11.5062 -0.8023 42 1 11.2872 -10.0849 -1.7488 43 1 12.3801 -12.0305 0.7074 44 1 13.9601 -11.4919 0.8974 45 1 11.5340 -7.8530 -0.5973 46 1 11.2569 -7.7321 1.1566 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354942964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:10 Heat of formation + Delta-G solvation = -92.361836 kcal Electronic energy + Delta-G solvation = -24720.159527 eV Core-core repulsion = 20962.912165 eV Total energy + Delta-G solvation = -3757.247362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66366 -39.31556 -38.70751 -35.83617 -34.48991 -33.70506 -32.42721 -31.58383 -31.23535 -29.12236 -25.96344 -25.56048 -24.83403 -23.30146 -21.99431 -20.99031 -20.26734 -20.11843 -18.01728 -17.84230 -17.25520 -16.45386 -16.34255 -16.08026 -15.75120 -15.36066 -15.16082 -14.94588 -14.83067 -14.63982 -14.28099 -13.92195 -13.80723 -13.54930 -13.18481 -13.15224 -12.78839 -12.68609 -12.14683 -12.05525 -11.87318 -11.76289 -11.52230 -11.25807 -11.23516 -10.99847 -10.94665 -10.91091 -10.58682 -10.29776 -10.22454 -9.84469 -9.50689 -9.00566 -8.93927 -8.75980 -8.48511 -6.90415 -6.27874 -3.99449 2.12254 2.75686 2.88637 3.00537 3.30304 3.34852 3.51894 3.53710 3.72974 4.06232 4.19976 4.29209 4.34496 4.55884 4.65185 4.67889 4.72483 4.80445 4.86779 4.92032 4.99733 5.11264 5.12304 5.15903 5.29214 5.33294 5.35449 5.37355 5.42286 5.52908 5.56187 5.60765 5.75641 5.77905 5.89588 5.96628 6.03249 6.22704 6.53475 6.63317 6.63788 6.77188 7.63934 7.73234 7.95199 8.42629 8.51978 9.18434 10.81338 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.040496 B = 0.001579 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.259789 B =17730.889271 C =18204.693916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.520 6.520 13 N -0.737 5.737 14 C 0.122 3.878 15 C -0.127 4.127 16 C 0.060 3.940 17 N -0.538 5.538 18 C 0.047 3.953 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.105 4.105 22 H 0.108 0.892 23 C 0.523 3.477 24 N -0.856 5.856 25 O -0.542 6.542 26 C 0.075 3.925 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.402 0.598 44 H 0.401 0.599 45 H 0.043 0.957 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.598 -28.549 -0.852 36.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.315 3.685 12 O -0.395 6.395 13 N -0.391 5.391 14 C -0.003 4.003 15 C -0.165 4.165 16 C -0.068 4.068 17 N -0.262 5.262 18 C -0.081 4.081 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.127 4.127 22 H 0.126 0.874 23 C 0.307 3.693 24 N -0.419 5.419 25 O -0.418 6.418 26 C -0.053 4.053 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.233 0.767 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.053 0.947 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.232 0.768 45 H 0.061 0.939 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 23.826 -26.354 -0.469 35.531 hybrid contribution -0.553 -0.902 -0.629 1.231 sum 23.272 -27.257 -1.098 35.857 Atomic orbital electron populations 1.69941 1.05915 1.27752 1.48119 1.24711 0.94445 0.98957 0.93168 0.86732 0.81911 0.83268 0.79931 1.19219 1.19941 1.15917 1.22324 0.88299 0.97539 1.58750 0.89390 1.84796 1.09242 1.00167 1.97424 1.23281 0.94065 1.04312 1.05800 1.20281 0.90577 0.82322 0.75273 1.90699 1.58813 1.42246 1.47742 1.45936 1.07471 1.08036 1.77664 1.21206 0.81573 0.95090 1.02413 1.21782 0.96088 0.95121 1.03479 1.21978 0.95987 0.87121 1.01759 1.61855 1.17776 1.11827 1.34784 1.22219 1.01183 0.94570 0.90153 1.21580 0.95678 0.95471 1.02580 1.21588 0.97388 0.99913 0.96105 1.21334 0.92356 0.98128 1.00883 0.87362 1.20644 0.91006 0.82668 0.74991 1.43885 1.13302 1.08199 1.76541 1.90771 1.56302 1.44830 1.49904 1.21794 0.87791 0.93461 1.02259 0.91957 0.88510 0.88449 0.76659 0.91758 0.91501 0.90220 0.91192 0.94220 0.90067 0.89921 0.94698 0.90602 0.90912 0.91216 0.91576 0.76994 0.76805 0.93885 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.91 27.74 -169.99 -4.71 17.20 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.46 7.85 -10.98 -0.09 9.37 16 12 O -0.52 -11.40 15.86 5.56 0.09 -11.31 16 13 N -0.74 -9.24 5.56 -60.29 -0.33 -9.58 16 14 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 15 C -0.13 -0.96 5.26 -26.73 -0.14 -1.10 16 16 C 0.06 0.45 4.96 -3.82 -0.02 0.43 16 17 N -0.54 -3.80 4.65 -234.67 -1.09 -4.90 16 18 C 0.05 0.28 5.29 -3.84 -0.02 0.26 16 19 C -0.12 -0.49 6.09 -26.65 -0.16 -0.65 16 20 C -0.11 -0.44 5.16 -26.61 -0.14 -0.58 16 21 C -0.11 -0.57 2.69 -91.69 -0.25 -0.82 16 22 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 23 C 0.52 3.60 7.43 -10.98 -0.08 3.52 16 24 N -0.86 -2.61 8.78 31.22 0.27 -2.34 16 25 O -0.54 -6.28 16.82 5.56 0.09 -6.18 16 26 C 0.08 0.57 4.04 -3.83 -0.02 0.55 16 27 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 29 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 30 H 0.40 3.81 8.47 -40.82 -0.35 3.47 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.48 6.44 -51.94 -0.33 0.15 16 35 H 0.04 0.31 8.12 -51.93 -0.42 -0.11 16 36 H 0.08 0.63 7.98 -51.93 -0.41 0.21 16 37 H 0.08 0.48 6.22 -51.93 -0.32 0.15 16 38 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.13 7.64 -51.93 -0.40 -0.27 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.40 0.07 8.30 -40.82 -0.34 -0.27 16 44 H 0.40 1.00 8.93 -40.82 -0.36 0.63 16 45 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 LS Contribution 384.96 15.07 5.80 5.80 Total: -1.00 -37.17 384.96 -9.18 -46.35 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -7.58 Total: -1.59 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.50 Total: -1.96 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.38 Total: -42.67 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.18 Total: -17.50 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.17 -9.18 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354942964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.009 kcal (2) G-P(sol) polarization free energy of solvation -37.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds