Wall clock time and date at job start Tue Mar 31 2020 05:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34775 * 120.00221 * 2 1 4 4 O 1.21279 * 120.00510 * 180.02562 * 3 2 1 5 5 C 1.50704 * 119.99687 * 359.97438 * 3 2 1 6 6 C 1.47204 * 109.46936 * 180.02562 * 5 3 2 7 7 N 4.73832 * 109.93015 * 359.97438 * 2 1 3 8 8 C 1.46495 * 119.99772 * 180.02562 * 2 1 3 9 9 H 1.08999 * 109.47694 * 359.97438 * 8 2 1 10 10 C 1.53004 * 109.46831 * 239.99768 * 8 2 1 11 11 N 1.46500 * 109.47109 * 55.00356 * 10 8 2 12 12 C 1.34776 * 119.99713 * 180.02562 * 11 10 8 13 13 O 1.21689 * 120.00372 * 359.97438 * 12 11 10 14 14 C 1.46383 * 119.99696 * 179.97438 * 12 11 10 15 15 H 1.07996 * 119.99635 * 359.97438 * 14 12 11 16 16 C 1.40046 * 119.99909 * 179.97438 * 14 12 11 17 17 N 1.30675 * 119.99975 * 359.97438 * 16 14 12 18 18 Si 1.86804 * 119.99946 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46804 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47140 * 119.99929 * 18 16 14 21 21 H 1.48501 * 109.46841 * 240.00018 * 18 16 14 22 22 C 1.53004 * 109.47438 * 120.00272 * 8 2 1 23 23 C 1.50706 * 109.46503 * 294.99458 * 22 8 2 24 24 C 1.38238 * 119.99727 * 90.00317 * 23 22 8 25 25 C 1.38234 * 119.99693 * 180.02562 * 24 23 22 26 26 C 1.38234 * 120.00240 * 359.97438 * 25 24 23 27 27 C 1.38233 * 120.00037 * 0.26327 * 26 25 24 28 28 C 1.38234 * 120.00207 * 270.01808 * 23 22 8 29 29 H 1.08996 * 109.47209 * 270.00403 * 1 2 3 30 30 H 1.09004 * 109.46654 * 29.99847 * 1 2 3 31 31 H 1.08999 * 109.47187 * 149.99380 * 1 2 3 32 32 H 1.08991 * 109.47350 * 299.99942 * 5 3 2 33 33 H 1.08998 * 109.47156 * 60.00578 * 5 3 2 34 34 H 1.09004 * 109.47115 * 174.99860 * 10 8 2 35 35 H 1.08999 * 109.47234 * 294.99728 * 10 8 2 36 36 H 0.96995 * 120.00069 * 359.97438 * 11 10 8 37 37 H 0.97002 * 119.99843 * 179.97438 * 17 16 14 38 38 H 1.09000 * 109.47324 * 175.00047 * 22 8 2 39 39 H 1.08993 * 109.47443 * 54.99251 * 22 8 2 40 40 H 1.07997 * 119.99846 * 359.97438 * 24 23 22 41 41 H 1.07999 * 119.99751 * 179.97438 * 25 24 23 42 42 H 1.08002 * 119.99744 * 179.97438 * 26 25 24 43 43 H 1.07998 * 120.00395 * 179.72811 * 27 26 25 44 44 H 1.07999 * 120.00008 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3420 3.5911 -0.0011 7 7 3.0802 4.4545 -0.0020 8 6 2.1974 -1.2687 -0.0006 9 1 1.4892 -2.0972 -0.0005 10 6 3.0771 -1.3503 1.2487 11 7 2.2502 -1.1537 2.4419 12 6 2.8146 -1.1841 3.6654 13 8 4.0110 -1.3753 3.7790 14 6 1.9884 -0.9872 4.8576 15 1 0.9267 -0.8171 4.7567 16 6 2.5748 -1.0193 6.1290 17 7 3.8594 -1.2257 6.2510 18 14 1.5204 -0.7687 7.6505 19 1 0.1079 -0.5561 7.2442 20 1 1.6109 -1.9700 8.5188 21 1 2.0043 0.4198 8.3977 22 6 3.0771 -1.3493 -1.2498 23 6 2.2037 -1.3927 -2.4772 24 6 1.8278 -0.2172 -3.0999 25 6 1.0262 -0.2570 -4.2254 26 6 0.6009 -1.4723 -4.7285 27 6 0.9728 -2.6475 -4.1029 28 6 1.7782 -2.6080 -2.9801 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8901 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 0.7591 2.5299 -0.8907 33 1 0.7585 2.5303 0.8892 34 1 3.5536 -2.3296 1.2942 35 1 3.8425 -0.5754 1.2053 36 1 1.2966 -1.0009 2.3513 37 1 4.2656 -1.2476 7.1316 38 1 3.6880 -2.2510 -1.2065 39 1 3.7246 -0.4737 -1.2954 40 1 2.1597 0.7323 -2.7065 41 1 0.7321 0.6614 -4.7116 42 1 -0.0257 -1.5033 -5.6076 43 1 0.6370 -3.5968 -4.4934 44 1 2.0714 -3.5263 -2.4932 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358082439.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:21 Heat of formation + Delta-G solvation = -16.013788 kcal Electronic energy + Delta-G solvation = -28198.195467 eV Core-core repulsion = 24308.814853 eV Total energy + Delta-G solvation = -3889.380614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61943 -39.14530 -37.38442 -36.51619 -35.81000 -33.82279 -32.85705 -32.15866 -31.02447 -30.87562 -29.35964 -26.72191 -26.52052 -24.95469 -22.70234 -22.67358 -21.41663 -19.62716 -19.36541 -17.69137 -17.41009 -17.05948 -16.78427 -16.06779 -15.82775 -15.31183 -15.26791 -15.00382 -14.47817 -14.26884 -13.99640 -13.84743 -13.54600 -13.37447 -13.14756 -12.98651 -12.88787 -12.71282 -12.67577 -12.37224 -12.27716 -12.13521 -11.93135 -11.71262 -11.46390 -11.25399 -11.09493 -11.06560 -10.84959 -10.80976 -10.44733 -10.18470 -9.59888 -9.07920 -8.96782 -8.83992 -8.53346 -7.57225 -7.43215 -6.16177 -4.61998 1.22001 1.25528 2.42032 2.54589 2.80758 3.12946 3.13340 3.20819 3.24723 3.63491 3.82586 4.10823 4.36701 4.59089 4.63001 4.73374 4.81264 4.83953 4.91728 4.97131 4.99680 5.04416 5.21916 5.24965 5.34324 5.38812 5.48779 5.51750 5.60287 5.65571 5.81809 5.85775 5.91965 6.13623 6.20342 6.32930 6.35960 6.50271 6.61335 6.80329 6.87594 7.28118 7.44280 7.55327 7.94483 8.11238 8.13220 8.34057 9.04410 9.57291 10.63382 10.82913 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013071 B = 0.003507 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.698320 B = 7982.908352 C = 9093.638486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.600 5.600 3 C 0.523 3.477 4 O -0.514 6.514 5 C -0.047 4.047 6 C 0.220 3.780 7 N -0.416 5.416 8 C 0.154 3.846 9 H 0.091 0.909 10 C 0.115 3.885 11 N -0.763 5.763 12 C 0.555 3.445 13 O -0.579 6.579 14 C -0.546 4.546 15 H 0.066 0.934 16 C 0.087 3.913 17 N -0.767 5.767 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.104 4.104 23 C -0.067 4.067 24 C -0.110 4.110 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.375 0.625 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.745 -0.067 -20.046 24.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.334 5.334 3 C 0.308 3.692 4 O -0.389 6.389 5 C -0.089 4.089 6 C -0.099 4.099 7 N -0.092 5.092 8 C 0.051 3.949 9 H 0.109 0.891 10 C -0.010 4.010 11 N -0.418 5.418 12 C 0.359 3.641 13 O -0.461 6.461 14 C -0.583 4.583 15 H 0.084 0.916 16 C -0.133 4.133 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.142 4.142 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.137 4.137 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.206 0.794 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.915 1.054 -19.835 22.664 hybrid contribution -1.486 -0.257 0.715 1.669 sum -12.400 0.797 -19.119 22.803 Atomic orbital electron populations 1.21957 0.79189 1.03378 1.02545 1.47679 1.06828 1.05450 1.73480 1.19840 0.87900 0.84419 0.77065 1.90769 1.13488 1.86764 1.47882 1.19261 0.95283 0.86740 1.07657 1.28062 0.94059 0.93935 0.93871 1.81184 1.07992 1.12038 1.08028 1.21383 0.94220 0.84607 0.94675 0.89052 1.21325 0.94283 1.01665 0.83767 1.46007 1.09698 1.80775 1.05366 1.18203 0.87771 0.76729 0.81419 1.90613 1.16005 1.53730 1.85746 1.20878 0.94864 1.52792 0.89782 0.91596 1.25705 0.94746 0.92817 0.99983 1.70036 1.10625 1.35064 1.23867 0.86354 0.80703 0.78315 0.81565 1.18836 1.20208 1.20234 1.21072 0.97360 1.05286 0.90502 1.19894 0.97461 0.93004 0.96312 1.21023 0.98203 0.97849 0.95716 1.21117 0.98376 0.97764 0.96552 1.21091 1.00790 0.92717 1.00148 1.21119 0.98348 0.98134 0.96122 1.21116 0.98361 0.97549 0.96687 0.91641 0.90937 0.90724 0.84841 0.84312 0.92711 0.90853 0.79362 0.92209 0.89676 0.88257 0.86691 0.86427 0.86524 0.86362 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.08 59.85 0.60 1.06 16 2 N -0.60 -6.27 1.65 -173.93 -0.29 -6.56 16 3 C 0.52 6.49 6.37 -10.98 -0.07 6.42 16 4 O -0.51 -8.94 12.27 5.56 0.07 -8.88 16 5 C -0.05 -0.39 4.74 -30.67 -0.15 -0.54 16 6 C 0.22 2.88 14.67 -20.76 -0.30 2.57 16 7 N -0.42 -6.83 18.54 42.15 0.78 -6.05 16 8 C 0.15 1.92 2.20 -67.93 -0.15 1.77 16 9 H 0.09 1.00 7.79 -51.93 -0.40 0.59 16 10 C 0.12 2.15 4.89 -4.04 -0.02 2.13 16 11 N -0.76 -16.21 5.38 -61.72 -0.33 -16.54 16 12 C 0.56 15.67 7.75 -12.98 -0.10 15.57 16 13 O -0.58 -19.05 15.02 5.20 0.08 -18.97 16 14 C -0.55 -15.20 9.54 -35.63 -0.34 -15.54 16 15 H 0.07 1.66 7.85 -52.49 -0.41 1.24 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -23.26 11.83 55.55 0.66 -22.60 16 18 Si 0.91 20.01 29.56 -169.99 -5.02 14.99 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 C -0.10 -1.23 4.70 -27.88 -0.13 -1.36 16 23 C -0.07 -0.67 4.95 -104.62 -0.52 -1.19 16 24 C -0.11 -1.05 9.31 -39.58 -0.37 -1.42 16 25 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 26 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 27 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 28 C -0.12 -1.10 9.70 -39.58 -0.38 -1.48 16 29 H 0.07 0.42 7.94 -51.93 -0.41 0.01 16 30 H 0.07 0.25 6.44 -51.93 -0.33 -0.09 16 31 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 32 H 0.13 0.51 7.40 -51.93 -0.38 0.12 16 33 H 0.14 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.63 6.32 -51.93 -0.33 1.30 16 36 H 0.38 6.74 7.79 -40.82 -0.32 6.42 16 37 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 38 H 0.08 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.10 1.41 5.99 -51.93 -0.31 1.10 16 40 H 0.12 1.13 7.35 -52.49 -0.39 0.74 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 377.76 15.07 5.69 5.69 Total: -1.00 -40.19 377.76 -7.37 -47.56 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.79 Total: 5.20 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -3.22 Total: 6.16 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.82 Total: -51.75 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: 0.15 Total: -27.84 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -40.19 -7.37 -47.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358082439.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.549 kcal (2) G-P(sol) polarization free energy of solvation -40.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds