Wall clock time and date at job start Tue Mar 31 2020 05:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34776 * 120.00078 * 2 1 4 4 O 1.21280 * 120.00188 * 184.82112 * 3 2 1 5 5 C 1.50703 * 120.00061 * 4.53860 * 3 2 1 6 6 C 1.47191 * 109.47200 * 175.46415 * 5 3 2 7 7 N 4.73649 * 110.05294 * 3.34656 * 2 1 3 8 8 C 1.46497 * 119.99759 * 179.97438 * 2 1 3 9 9 H 1.08996 * 109.47420 * 0.25338 * 8 2 1 10 10 C 1.53006 * 109.47042 * 120.25453 * 8 2 1 11 11 N 1.46503 * 109.46811 * 305.11604 * 10 8 2 12 12 C 1.34772 * 119.99935 * 180.02562 * 11 10 8 13 13 O 1.21697 * 119.99853 * 359.97438 * 12 11 10 14 14 C 1.46380 * 120.00117 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99845 * 359.97438 * 14 12 11 16 16 C 1.40048 * 119.99898 * 179.97438 * 14 12 11 17 17 N 1.30673 * 120.00138 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99843 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46738 * 60.00559 * 18 16 14 20 20 H 1.48494 * 109.47077 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47354 * 300.00483 * 18 16 14 22 22 C 1.53001 * 109.47276 * 240.24820 * 8 2 1 23 23 C 1.50700 * 109.46679 * 63.79388 * 22 8 2 24 24 C 1.38238 * 120.00013 * 269.72653 * 23 22 8 25 25 C 1.38237 * 119.99604 * 179.76969 * 24 23 22 26 26 C 1.38233 * 120.00201 * 0.50265 * 25 24 23 27 27 C 1.38230 * 120.00162 * 359.75213 * 26 25 24 28 28 C 1.38235 * 119.99799 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47281 * 90.00259 * 1 2 3 30 30 H 1.09006 * 109.47224 * 210.00361 * 1 2 3 31 31 H 1.08999 * 109.47388 * 330.00256 * 1 2 3 32 32 H 1.09005 * 109.46964 * 295.46364 * 5 3 2 33 33 H 1.09000 * 109.47097 * 55.45959 * 5 3 2 34 34 H 1.08994 * 109.47161 * 65.11142 * 10 8 2 35 35 H 1.08993 * 109.47384 * 185.11324 * 10 8 2 36 36 H 0.97004 * 119.99698 * 359.97438 * 11 10 8 37 37 H 0.97001 * 119.99619 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47102 * 183.79007 * 22 8 2 39 39 H 1.08996 * 109.47231 * 303.79929 * 22 8 2 40 40 H 1.07994 * 120.00297 * 359.97438 * 24 23 22 41 41 H 1.08004 * 119.99808 * 180.23270 * 25 24 23 42 42 H 1.08004 * 120.00272 * 179.72843 * 26 25 24 43 43 H 1.08006 * 120.00451 * 179.97438 * 27 26 25 44 44 H 1.08003 * 119.99898 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3485 1.1691 -0.0883 5 6 1.3890 2.4703 0.1033 6 6 2.3485 3.5829 0.1916 7 7 3.0891 4.4418 0.2597 8 6 2.1974 -1.2687 0.0006 9 1 1.4892 -2.0972 -0.0036 10 6 3.0819 -1.3476 -1.2455 11 7 2.2599 -1.1456 -2.4413 12 6 2.8288 -1.1739 -3.6627 13 8 4.0254 -1.3667 -3.7722 14 6 2.0075 -0.9726 -4.8575 15 1 0.9455 -0.8018 -4.7603 16 6 2.5988 -1.0015 -6.1267 17 7 3.8837 -1.2086 -6.2443 18 14 1.5506 -0.7453 -7.6515 19 1 0.9024 0.5893 -7.5880 20 1 2.4091 -0.8210 -8.8608 21 1 0.5071 -1.7998 -7.7177 22 6 3.0724 -1.3520 1.2530 23 6 2.1952 -1.3681 2.4783 24 6 1.8426 -0.1804 3.0915 25 6 1.0341 -0.1950 4.2127 26 6 0.5867 -1.3977 4.7267 27 6 0.9435 -2.5856 4.1165 28 6 1.7474 -2.5708 2.9920 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 0.7625 2.5999 -0.7793 33 1 0.7623 2.4592 0.9951 34 1 3.8483 -0.5741 -1.1966 35 1 3.5570 -2.3274 -1.2924 36 1 1.3061 -0.9922 -2.3539 37 1 4.2932 -1.2282 -7.1234 38 1 3.6677 -2.2645 1.2203 39 1 3.7347 -0.4872 1.2916 40 1 2.1961 0.7589 2.6929 41 1 0.7555 0.7331 4.6897 42 1 -0.0414 -1.4094 5.6052 43 1 0.5943 -3.5254 4.5183 44 1 2.0266 -3.4989 2.5155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358082441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:24 Heat of formation + Delta-G solvation = -15.490789 kcal Electronic energy + Delta-G solvation = -28214.079537 eV Core-core repulsion = 24324.721602 eV Total energy + Delta-G solvation = -3889.357935 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61884 -39.15210 -37.37107 -36.51941 -35.81386 -33.81734 -32.85090 -32.15147 -31.03505 -30.88288 -29.35958 -26.71521 -26.51816 -24.95257 -22.71318 -22.66621 -21.42898 -19.61246 -19.36389 -17.69718 -17.40087 -17.05193 -16.80210 -16.06942 -15.83306 -15.30649 -15.26826 -15.00503 -14.46561 -14.29292 -13.97357 -13.85089 -13.55404 -13.38309 -13.15316 -12.99349 -12.86806 -12.72766 -12.67696 -12.38901 -12.25953 -12.13285 -11.92189 -11.71998 -11.45860 -11.25395 -11.09720 -11.07861 -10.83165 -10.81070 -10.42627 -10.22795 -9.59328 -9.08870 -8.96863 -8.81581 -8.53549 -7.56232 -7.40708 -6.14829 -4.60937 1.20965 1.24470 2.42346 2.53226 2.79015 3.12730 3.16047 3.20996 3.22862 3.62466 3.81533 4.11691 4.36481 4.58400 4.64197 4.72081 4.80556 4.82730 4.91442 4.96338 4.99537 5.03718 5.21048 5.24809 5.33874 5.37799 5.48705 5.52046 5.60245 5.65159 5.82852 5.85019 5.90795 6.11828 6.20210 6.31848 6.35047 6.50209 6.61287 6.82695 6.86593 7.28813 7.44922 7.53813 7.95698 8.12631 8.14398 8.34845 9.05202 9.58902 10.64759 10.84358 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.013228 B = 0.003494 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.269715 B = 8011.174956 C = 9097.581222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.601 5.601 3 C 0.522 3.478 4 O -0.512 6.512 5 C -0.047 4.047 6 C 0.220 3.780 7 N -0.416 5.416 8 C 0.154 3.846 9 H 0.091 0.909 10 C 0.115 3.885 11 N -0.762 5.762 12 C 0.556 3.444 13 O -0.579 6.579 14 C -0.547 4.547 15 H 0.065 0.935 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.102 4.102 23 C -0.067 4.067 24 C -0.110 4.110 25 C -0.120 4.120 26 C -0.129 4.129 27 C -0.119 4.119 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.375 0.625 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 -0.074 20.145 24.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.307 3.693 4 O -0.386 6.386 5 C -0.090 4.090 6 C -0.099 4.099 7 N -0.093 5.093 8 C 0.051 3.949 9 H 0.109 0.891 10 C -0.011 4.011 11 N -0.418 5.418 12 C 0.360 3.640 13 O -0.461 6.461 14 C -0.584 4.584 15 H 0.083 0.917 16 C -0.132 4.132 17 N -0.396 5.396 18 Si 0.731 3.269 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.141 4.141 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.138 4.138 26 C -0.147 4.147 27 C -0.137 4.137 28 C -0.137 4.137 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.206 0.794 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.936 1.041 19.987 22.807 hybrid contribution -1.510 -0.237 -0.734 1.696 sum -12.446 0.804 19.253 22.940 Atomic orbital electron populations 1.21955 0.79203 1.03356 1.02537 1.47669 1.06806 1.05426 1.73599 1.19839 0.87890 0.84376 0.77219 1.90784 1.13797 1.86646 1.47392 1.19270 0.95255 0.86963 1.07517 1.28073 0.94057 0.93947 0.93855 1.81191 1.08017 1.11921 1.08126 1.21382 0.94231 0.84625 0.94657 0.89052 1.21353 0.94389 1.01667 0.83702 1.45989 1.09718 1.80694 1.05377 1.18175 0.87713 0.76728 0.81431 1.90614 1.15948 1.53760 1.85800 1.20810 0.94827 1.52933 0.89844 0.91709 1.25697 0.94733 0.92831 0.99953 1.70014 1.10493 1.34941 1.24187 0.86466 0.80261 0.79401 0.80765 1.19368 1.20616 1.19334 1.21042 0.97328 1.05099 0.90591 1.19884 0.97475 0.93038 0.96285 1.21019 0.98286 0.97700 0.95833 1.21117 0.98236 0.97898 0.96531 1.21092 1.00753 0.92707 1.00163 1.21120 0.98396 0.98033 0.96149 1.21112 0.98305 0.97665 0.96594 0.91651 0.90765 0.90934 0.84274 0.84895 0.90563 0.92838 0.79401 0.92102 0.89580 0.88625 0.86738 0.86410 0.86510 0.86348 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.16 59.85 0.61 1.07 16 2 N -0.60 -6.29 1.60 -173.93 -0.28 -6.57 16 3 C 0.52 6.50 6.23 -10.98 -0.07 6.43 16 4 O -0.51 -9.02 12.32 5.56 0.07 -8.95 16 5 C -0.05 -0.39 4.75 -30.67 -0.15 -0.54 16 6 C 0.22 2.84 14.67 -20.76 -0.30 2.53 16 7 N -0.42 -6.74 18.54 42.16 0.78 -5.96 16 8 C 0.15 1.92 2.22 -67.93 -0.15 1.77 16 9 H 0.09 1.00 7.80 -51.93 -0.40 0.59 16 10 C 0.11 2.14 4.87 -4.04 -0.02 2.12 16 11 N -0.76 -16.31 5.38 -61.72 -0.33 -16.64 16 12 C 0.56 15.77 7.75 -12.99 -0.10 15.67 16 13 O -0.58 -19.12 15.02 5.19 0.08 -19.04 16 14 C -0.55 -15.29 9.54 -35.63 -0.34 -15.63 16 15 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 16 C 0.09 2.45 5.50 -17.37 -0.10 2.36 16 17 N -0.77 -23.35 11.83 55.55 0.66 -22.69 16 18 Si 0.91 20.08 29.56 -169.99 -5.02 15.05 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 22 C -0.10 -1.20 4.70 -27.88 -0.13 -1.33 16 23 C -0.07 -0.67 4.93 -104.62 -0.52 -1.18 16 24 C -0.11 -1.04 9.25 -39.58 -0.37 -1.40 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.13 -1.01 10.05 -39.59 -0.40 -1.40 16 27 C -0.12 -0.97 10.05 -39.59 -0.40 -1.36 16 28 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 29 H 0.06 0.43 7.96 -51.93 -0.41 0.01 16 30 H 0.07 0.43 7.92 -51.93 -0.41 0.02 16 31 H 0.07 0.25 6.32 -51.93 -0.33 -0.08 16 32 H 0.14 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.13 0.51 7.32 -51.93 -0.38 0.13 16 34 H 0.08 1.70 6.17 -51.93 -0.32 1.38 16 35 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.37 6.79 7.81 -40.82 -0.32 6.47 16 37 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 38 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.10 1.34 6.20 -51.93 -0.32 1.02 16 40 H 0.11 1.11 7.28 -52.49 -0.38 0.73 16 41 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 43 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 LS Contribution 377.50 15.07 5.69 5.69 Total: -1.00 -40.30 377.50 -7.35 -47.66 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.78 Total: 5.19 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -3.21 Total: 6.27 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.83 Total: -51.87 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: 0.15 Total: -27.99 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -40.30 -7.35 -47.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358082441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.164 kcal (2) G-P(sol) polarization free energy of solvation -40.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds