Wall clock time and date at job start Tue Mar 31 2020 05:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46991 * 2 1 4 4 C 1.52994 * 109.58321 * 304.68022 * 3 2 1 5 5 C 1.53001 * 109.47498 * 304.16424 * 4 3 2 6 6 C 1.53236 * 109.57851 * 64.95806 * 3 2 1 7 7 N 1.46371 * 109.49455 * 62.13667 * 6 3 2 8 8 C 1.34773 * 119.64777 * 245.11297 * 7 6 3 9 9 O 1.21589 * 120.00250 * 354.50425 * 8 7 6 10 10 N 1.34779 * 119.99908 * 174.51304 * 8 7 6 11 11 C 1.46504 * 119.99661 * 184.93034 * 10 8 7 12 12 C 1.50699 * 109.46810 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00450 * 359.97438 * 12 11 10 14 14 N 1.34783 * 119.99947 * 180.02562 * 12 11 10 15 15 C 1.37095 * 119.99932 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00102 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99549 * 179.97438 * 15 14 12 18 18 N 1.31409 * 120.00309 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99691 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47518 * 60.00340 * 19 17 15 21 21 H 1.48507 * 109.47306 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47362 * 300.00517 * 19 17 15 23 23 C 1.46379 * 120.70586 * 65.08430 * 7 6 3 24 24 C 1.53241 * 109.48856 * 294.91537 * 23 7 6 25 25 S 1.81739 * 108.79881 * 57.65501 * 24 23 7 26 26 H 1.09000 * 109.46976 * 295.44707 * 1 2 3 27 27 H 1.09000 * 109.46929 * 175.44654 * 1 2 3 28 28 H 1.09002 * 109.47254 * 55.44674 * 1 2 3 29 29 H 1.09000 * 109.47286 * 120.00273 * 2 1 3 30 30 H 1.09004 * 109.47167 * 240.00508 * 2 1 3 31 31 H 1.09000 * 109.47361 * 64.16964 * 4 3 2 32 32 H 1.09005 * 109.46767 * 184.16538 * 4 3 2 33 33 H 1.09006 * 109.46710 * 65.25306 * 5 4 3 34 34 H 1.08991 * 109.47508 * 185.25273 * 5 4 3 35 35 H 1.08997 * 109.46826 * 305.25554 * 5 4 3 36 36 H 1.09010 * 109.46490 * 182.14402 * 6 3 2 37 37 H 1.09004 * 109.46836 * 302.13027 * 6 3 2 38 38 H 0.97001 * 120.00483 * 4.92227 * 10 8 7 39 39 H 1.09003 * 109.47060 * 299.99544 * 11 10 8 40 40 H 1.08998 * 109.47259 * 60.00026 * 11 10 8 41 41 H 0.97001 * 119.99777 * 359.97438 * 14 12 11 42 42 H 0.96999 * 119.99885 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.47309 * 54.91915 * 23 7 6 44 44 H 1.09004 * 109.47034 * 174.91292 * 23 7 6 45 45 H 1.09006 * 109.58278 * 177.45093 * 24 23 7 46 46 H 1.09003 * 109.58482 * 297.86405 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4376 2.1994 -1.1854 5 6 1.7621 1.4565 -2.4830 6 6 1.6350 2.1304 1.3080 7 7 2.2591 1.4389 2.4371 8 6 1.4859 0.8011 3.3381 9 8 0.2750 0.8851 3.2680 10 7 2.0551 0.0701 4.3171 11 6 1.2165 -0.7101 5.2304 12 6 2.0914 -1.4310 6.2234 13 8 3.2967 -1.3058 6.1729 14 7 1.5344 -2.2158 7.1671 15 6 2.3303 -2.8720 8.0701 16 1 3.4035 -2.7605 8.0251 17 6 1.7560 -3.6806 9.0433 18 7 0.4501 -3.8167 9.0978 19 14 2.8404 -4.5742 10.2742 20 1 3.6286 -3.5835 11.0504 21 1 1.9905 -5.3657 11.1997 22 1 3.7643 -5.4844 9.5508 23 6 3.7140 1.4323 2.5978 24 6 4.3533 0.6657 1.4351 25 16 3.8530 1.4476 -0.1274 26 1 -0.3633 0.4416 0.9280 27 1 -0.3633 -1.0244 -0.0816 28 1 -0.3634 0.5829 -0.8464 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8901 31 1 0.3563 2.2634 -1.0640 32 1 1.8587 3.2040 -1.2268 33 1 1.2634 0.4873 -2.4812 34 1 1.4146 2.0424 -3.3338 35 1 2.8397 1.3105 -2.5582 36 1 1.9660 3.1688 1.2900 37 1 0.5508 2.0966 1.4157 38 1 3.0199 0.0606 4.4168 39 1 0.5382 -0.0420 5.7612 40 1 0.6383 -1.4377 4.6609 41 1 0.5705 -2.3163 7.2074 42 1 0.0493 -4.3815 9.7770 43 1 4.0836 2.4576 2.6037 44 1 3.9734 0.9472 3.5389 45 1 5.4388 0.6984 1.5288 46 1 4.0143 -0.3702 1.4501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358267976.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:44 Heat of formation + Delta-G solvation = -65.694118 kcal Electronic energy + Delta-G solvation = -27001.480128 eV Core-core repulsion = 23245.389164 eV Total energy + Delta-G solvation = -3756.090963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56146 -38.53292 -37.72610 -35.76936 -34.51130 -33.71265 -31.42347 -31.27721 -30.99200 -29.21868 -27.28137 -24.88248 -24.24928 -24.06394 -23.02760 -19.90569 -19.74441 -19.53514 -18.55634 -17.92591 -16.73842 -16.27048 -16.17568 -15.63942 -15.47274 -15.06049 -14.75060 -14.55431 -14.39573 -14.10598 -14.02796 -13.74766 -13.42162 -13.28446 -12.93878 -12.78515 -12.40079 -12.24452 -12.18515 -12.09636 -11.93215 -11.83244 -11.65430 -11.40435 -11.13002 -11.08219 -10.75273 -10.68433 -10.53205 -10.34333 -10.02791 -9.82696 -9.65759 -9.08490 -8.67206 -8.65697 -8.13347 -7.82014 -6.54207 -3.96480 1.49098 2.27175 2.58212 3.11226 3.19630 3.23176 3.23464 3.71100 3.85028 4.10290 4.29834 4.45655 4.58982 4.67322 4.78994 4.84076 4.96219 5.00905 5.14319 5.16137 5.24764 5.30105 5.34698 5.39442 5.44235 5.53545 5.58511 5.65192 5.68943 5.84202 5.87066 5.95338 5.96014 5.97051 6.03574 6.10485 6.31519 6.35733 6.67026 6.86438 7.42980 7.88848 8.03468 8.41584 8.65858 9.01414 9.35962 9.83597 10.62534 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.002591 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.328255 B =10803.076682 C =11265.212503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.035 4.035 4 C -0.099 4.099 5 C -0.154 4.154 6 C 0.136 3.864 7 N -0.632 5.632 8 C 0.708 3.292 9 O -0.588 6.588 10 N -0.724 5.724 11 C 0.127 3.873 12 C 0.428 3.572 13 O -0.599 6.599 14 N -0.548 5.548 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.894 5.894 19 Si 0.934 3.066 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.272 1.272 23 C 0.109 3.891 24 C -0.105 4.105 25 S -0.250 6.250 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.406 0.594 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.396 0.604 42 H 0.275 0.725 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.115 0.885 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.996 10.869 -19.200 22.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.146 4.146 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.212 4.212 6 C 0.010 3.990 7 N -0.369 5.369 8 C 0.409 3.591 9 O -0.467 6.467 10 N -0.384 5.384 11 C -0.001 4.001 12 C 0.213 3.787 13 O -0.486 6.486 14 N -0.182 5.182 15 C -0.435 4.435 16 H 0.123 0.877 17 C -0.177 4.177 18 N -0.534 5.534 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.017 4.017 24 C -0.254 4.254 25 S -0.021 6.021 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.246 0.754 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.230 0.770 42 H 0.085 0.915 43 H 0.103 0.897 44 H 0.113 0.887 45 H 0.134 0.866 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.484 11.247 -19.928 23.017 hybrid contribution -0.227 -1.135 1.764 2.110 sum 2.257 10.111 -18.164 20.911 Atomic orbital electron populations 1.21972 0.94765 1.02025 1.02904 1.21735 0.96859 0.93506 1.02530 1.23307 0.92724 0.99814 0.98736 1.21399 1.01034 0.98821 0.92544 1.21853 1.02517 1.00590 0.96229 1.21609 1.00628 0.94557 0.82178 1.46996 1.05771 1.57197 1.26918 1.15777 0.85148 0.78570 0.79594 1.90880 1.11863 1.67541 1.76373 1.45029 1.11408 1.49669 1.32301 1.20804 0.92835 0.95043 0.91435 1.19736 0.88743 0.85091 0.85087 1.90482 1.14738 1.67949 1.75463 1.41780 1.09979 1.39901 1.26553 1.19673 0.92599 1.23525 1.07736 0.87733 1.25326 0.96182 0.97610 0.98537 1.69605 1.09450 1.38940 1.35419 0.85875 0.79227 0.79250 0.79633 1.19757 1.20827 1.19771 1.21719 0.80150 1.01599 0.98196 1.23909 1.04443 1.02461 0.94623 1.86711 1.06764 1.80808 1.27770 0.90929 0.92759 0.92432 0.91966 0.90983 0.90054 0.91051 0.92157 0.92633 0.91698 0.90558 0.87320 0.75371 0.89898 0.90102 0.77008 0.91495 0.89676 0.88688 0.86639 0.89266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.10 37.16 0.34 -1.31 16 2 C -0.11 -1.13 4.21 -26.73 -0.11 -1.25 16 3 C -0.03 -0.33 0.39 -90.50 -0.04 -0.37 16 4 C -0.10 -0.78 4.43 -26.73 -0.12 -0.90 16 5 C -0.15 -1.16 9.11 37.16 0.34 -0.82 16 6 C 0.14 1.45 4.75 -3.99 -0.02 1.44 16 7 N -0.63 -7.73 2.10 -179.32 -0.38 -8.10 16 8 C 0.71 11.11 7.97 -86.92 -0.69 10.41 16 9 O -0.59 -10.70 14.63 5.29 0.08 -10.62 16 10 N -0.72 -11.94 5.43 -66.41 -0.36 -12.30 16 11 C 0.13 2.32 6.16 -5.19 -0.03 2.29 16 12 C 0.43 9.64 7.85 -10.98 -0.09 9.56 16 13 O -0.60 -14.99 15.24 5.55 0.08 -14.91 16 14 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 15 C -0.31 -8.22 9.68 -14.93 -0.14 -8.36 16 16 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 17 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 18 N -0.89 -23.68 13.05 55.50 0.72 -22.95 16 19 Si 0.93 20.35 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 23 C 0.11 1.11 6.19 -3.98 -0.02 1.09 16 24 C -0.10 -1.01 6.28 37.28 0.23 -0.77 16 25 S -0.25 -2.48 19.81 -107.50 -2.13 -4.61 16 26 H 0.07 0.92 5.70 -51.93 -0.30 0.62 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.50 5.86 -51.93 -0.30 0.19 16 29 H 0.06 0.80 6.37 -51.93 -0.33 0.47 16 30 H 0.07 0.73 6.77 -51.93 -0.35 0.38 16 31 H 0.08 0.59 6.51 -51.93 -0.34 0.25 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 6.40 -51.93 -0.33 0.13 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.55 6.96 -51.93 -0.36 0.19 16 36 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 37 H 0.11 1.30 5.34 -51.93 -0.28 1.03 16 38 H 0.41 6.55 4.82 -40.82 -0.20 6.35 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 41 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 42 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 1.02 5.48 -51.93 -0.28 0.74 16 45 H 0.12 0.92 8.14 -51.92 -0.42 0.50 16 46 H 0.09 0.96 7.48 -51.93 -0.39 0.57 16 LS Contribution 364.23 15.07 5.49 5.49 Total: -1.00 -30.04 364.23 -8.70 -38.74 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: -6.68 Total: 15.81 kcal Atomic # 6 Polarization: 12.05 SS G_CDS: -0.45 Total: 11.59 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.07 Total: -56.82 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: 0.16 Total: -25.53 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: -2.48 SS G_CDS: -2.13 Total: -4.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.04 -8.70 -38.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358267976.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.953 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds